View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_low_7 (Length: 624)
Name: NF20775_low_7
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 451
Target Start/End: Complemental strand, 40093311 - 40092880
Alignment:
| Q |
19 |
ctgatgtgtatatggttcatgttagatatagtaatgagagaaatcattgggggagcaagcaattctatgcataattggaaactaaaaacaagaaaagctg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093311 |
ctgatgtgtatatggttcatgttagatatagtaatgagagaaatcattgggggagcaagcaattctatgcataattggaaactaaaaacaagaaaagctg |
40093212 |
T |
|
| Q |
119 |
aacctgaagtccaactgttaaactcagcagatcaattttattctttccagaaagaactgtgatcgggatgtcctcattaagcttaggtttttctttgttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093211 |
aacctgaagtccaactgttaaactcagcagatcaattttattctttccagaaagaactgtgatcgggatgtcctcattaagcttaggtttttctttgttc |
40093112 |
T |
|
| Q |
219 |
ccggtttgactccctaagaattcatcaataatatcatagaaagttattatttaataattcaagaacttaattgaaacaataaattatgaacatttttaaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
40093111 |
ccggtttgactccctaagaattcatcaataatatcatagaaagttattatttaataattcaagaacttaattgaaaaaataaattatgaacatttttaga |
40093012 |
T |
|
| Q |
319 |
aggaacatccatcatcaactctccctccnnnnnnnnnnnnnnnnnnntcaacgatcaactcatgttttaacttgttttaaaatcaacctcaacttcattt |
418 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40093011 |
aggaacatccatcatcaactctccct-aaaaaaaataaaaaaaaaaatcaatgatcaactcatgttttaacttgttttaaaatcaacctcgacttcattt |
40092913 |
T |
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| Q |
419 |
gagtttcaataacacagggtctttgagagtttc |
451 |
Q |
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| T |
40092912 |
gagtttcaataacacaggctctttgagactttc |
40092880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 40062659 - 40062329
Alignment:
| Q |
19 |
ctgatgtgtatatggttcatgttag-----atatagtaatgagagaaatcattgggggagcaagcaattctatgcataattggaaactaaaaacaagaaa |
113 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||| ||||| |||| |
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| T |
40062659 |
ctgatgtgcatatggttcatgttagcttagatatagtaatgagagaaatctttggaggagcaagccattctatgcataattggaaactacaaacacgaaa |
40062560 |
T |
|
| Q |
114 |
agctgaacctgaagtccaactgttaaactcagcagatcaattttattctttccagaaagaactgtgatcgggatgtcctcattaagcttaggtttttctt |
213 |
Q |
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| T |
40062559 |
atctgaacctgaagtccaactgttagactcagcagatcaatttggttatttccataaattactttgattgggatgtccacattaagcttaggtttgtctt |
40062460 |
T |
|
| Q |
214 |
tgttcccggtttgactccctaagaattcatcaataatatcatagaaagttattatttaataattcaagaacttaattgaaacaataaattatgaacattt |
313 |
Q |
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| T |
40062459 |
tgttcccggtgtgactccctaagaattcatcaataatatcatcgaaagttataatttaataattcaagaacttaatggaaacaataaattatgaacattt |
40062360 |
T |
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| Q |
314 |
ttaaaaggaacatccatcatcaactctccct |
344 |
Q |
| |
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|| | |||||||||| ||||||||||||| |
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| T |
40062359 |
ttggacggaacatccaagatcaactctccct |
40062329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 448 - 624
Target Start/End: Complemental strand, 40088077 - 40087902
Alignment:
| Q |
448 |
tttcaaaatataaaaaccatatccttgtgaataaattacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggac |
547 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40088077 |
tttcaaaatataaaaaccatatccttgtgaataa-ttacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggac |
40087979 |
T |
|
| Q |
548 |
agtttgagaaccaggatcatccttaagatcaacgcttcaaaagaatacaatagaagtgttatcgagaagtacagaat |
624 |
Q |
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| T |
40087978 |
agtttgagaaccaggatcatccttaagatcaacgcttcaaaagaatacaatagaagtgttatcgagaagtacagaat |
40087902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 371 - 624
Target Start/End: Complemental strand, 40062311 - 40062055
Alignment:
| Q |
371 |
gatcaactcatgtttt-aacttgttttaaaatcaacctcaacttcatttgagtttcaataacacagggtctttgagagtttcaaaatataaaaaccata- |
468 |
Q |
| |
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||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||| |||||||| || | ||||||| |
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| T |
40062311 |
gatcaactcatatttttaacttgttttaaaatcaaccttgacttcatttgagtttcaataatacaggctctttgagactttcaaaacattagaaccataa |
40062212 |
T |
|
| Q |
469 |
--tccttgtgaataaattacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggacagtttgagaaccaggatca |
566 |
Q |
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| || |||||||| |||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||| |
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| T |
40062211 |
aattctagtgaataa-ttacctgcaagctttccgtttacgaaagcatgaagggcatggccgagtgattcaatgtgaagtacagtttgagaaccaagatca |
40062113 |
T |
|
| Q |
567 |
tccttaagatcaacgcttcaaaagaatacaatagaagtgttatcgagaagtacagaat |
624 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40062112 |
tccttaagatcaacgcttcaaaagaatataatagaagtgttatcgagaagtacagaat |
40062055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 483 - 620
Target Start/End: Complemental strand, 40080330 - 40080194
Alignment:
| Q |
483 |
ttacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggacagtttgagaaccaggatcatccttaagatcaacgc |
582 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||| |||||||| || |
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| T |
40080330 |
ttaccagcaagcttgccgtttatgaaagcatgaagggcatggccaagtgattcaatgtgcaggacagtttgagaaccgggatcatccgcaagatcaaggc |
40080231 |
T |
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| Q |
583 |
ttcaaaagaatacaatagaagtgttatcgagaagtaca |
620 |
Q |
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|| |||| ||||||| |||||||||||| ||||||||| |
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| T |
40080230 |
tttaaaa-aatacaagagaagtgttatcaagaagtaca |
40080194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 85 - 204
Target Start/End: Complemental strand, 40080912 - 40080793
Alignment:
| Q |
85 |
atgcataattggaaactaaaaacaagaaaagctgaacctgaagtccaactgttaaactcagcagatcaattttattctttccagaaagaactgtgatcgg |
184 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||| | || ||| || |
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| T |
40080912 |
atgcatatttagaaactaaaaacaagaaaagctgaacctgaagtccaactgttaaactcagtagatcaattttgttctttccggaaactagtgcgattgg |
40080813 |
T |
|
| Q |
185 |
gatgtcctcattaagcttag |
204 |
Q |
| |
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||||||| |||||||||||| |
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| T |
40080812 |
gatgtccacattaagcttag |
40080793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 40081008 - 40080933
Alignment:
| Q |
19 |
ctgatgtgtatatggttcat-----gttagatatagtaatgagagaaatcattgggggagcaagcaattctatgca |
89 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||| | |||||||| |
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| T |
40081008 |
ctgatgtgtatatggttcatattagcttagatatagtaatgagagaaatcactgaaggagcaagccagtctatgca |
40080933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 483 - 554
Target Start/End: Original strand, 22013454 - 22013525
Alignment:
| Q |
483 |
ttacctgcaagcttgccgtttatgaaagcatgaagggcatggccgagcgattcaatgtgaaggacagtttga |
554 |
Q |
| |
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||||| |||||||| || |||| |||||||||||||||||||| || |||||||||||||| |||| |||| |
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| T |
22013454 |
ttaccagcaagcttcccatttacaaaagcatgaagggcatggccaagggattcaatgtgaagaacaggttga |
22013525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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