View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_low_72 (Length: 236)
Name: NF20775_low_72
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_low_72 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 29049694 - 29049914
Alignment:
| Q |
1 |
tcatctcatctctatttaatagctaaaatctattgattgtgtgaatgcgtgcttctcatgctttcaaagattctagggttgttctctgttggatgaagat |
100 |
Q |
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| T |
29049694 |
tcatctcatctctatttaatagctaaaatctattgattgtgtgaatgcgtgcttctcatgctttcaaagattctagggttgttctctgttggatgaagat |
29049793 |
T |
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| Q |
101 |
cagacgactcatattttgagctgaattttgttaacttggaatacaagtcgtctgatctctatccaacaactaaaatctcttgattggatgaatgcatact |
200 |
Q |
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| T |
29049794 |
cagacgactcataatttgagctgaattttgttaacttggaatacaagtcgtctaatctctatccaacaactaaaatctcttgattggatgaatgcatact |
29049893 |
T |
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| Q |
201 |
tctcacgacttcaaagattct |
221 |
Q |
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| T |
29049894 |
tctcacgacttcaaagattct |
29049914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 63 - 214
Target Start/End: Original strand, 29052988 - 29053138
Alignment:
| Q |
63 |
ttcaaagattctagggttgttctctgttggatgaagatcagacgactcatattttgagctgaattttgttaacttggaatacaagtcgtctgatctctat |
162 |
Q |
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| T |
29052988 |
ttcaaagatttt-gggttgttctcaattggatgaagatcagacgactcatattctgagtagtattttgtaaagatagaatacaagtcgtctgatctctat |
29053086 |
T |
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| Q |
163 |
ccaacaactaaaatctcttgattggatgaatgcatacttctcacgacttcaa |
214 |
Q |
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| T |
29053087 |
ccaacaactaaaatctcttgattggatgaaagcatacttttcatgacttcaa |
29053138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 29049863 - 29049955
Alignment:
| Q |
23 |
ctaaaatctattgattgtgtgaatgcgtgcttctcatgctttcaaagattctagggttgttctctgttggatgaagatcagacgactcatatt |
115 |
Q |
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| T |
29049863 |
ctaaaatctcttgattggatgaatgcatacttctcacgacttcaaagattctagggttgtttgctgttggatgaaaatcagacgactcgtatt |
29049955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 29049622 - 29049663
Alignment:
| Q |
88 |
gttggatgaagatcagacgactcatattttgagctgaatttt |
129 |
Q |
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| T |
29049622 |
gttggatgaagatcagacgactcatattttgaactgtatttt |
29049663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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