View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20775_low_73 (Length: 235)
Name: NF20775_low_73
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20775_low_73 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 9 - 150
Target Start/End: Complemental strand, 5179838 - 5179697
Alignment:
| Q |
9 |
tggcagtgagaatgaactgttcgttgcagaacacactctccattctttcactccgttccaattccaatgtttcacacctcaaatctaacaaaccctattt |
108 |
Q |
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| T |
5179838 |
tggcagtaagaatgaactgttcgttacagaacacactctccattctttcactccgttccaattccaatgtttcacacctcaaatccaacaaaccctattt |
5179739 |
T |
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| Q |
109 |
ccatttcccttcttctccaagagcagctttgttctgcaaatg |
150 |
Q |
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| T |
5179738 |
ccatttcccttcttctccaagagcagctttgttctgcaaatg |
5179697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 52009640 - 52009410
Alignment:
| Q |
9 |
tggcagtgagaatgaactgttcgttgcagaacacactctccattctttcactccgttccaattccaatgtttcacacctcaaatctaacaaaccctattt |
108 |
Q |
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| T |
52009640 |
tggcagtgagaatgaactgttccttacagaacacactctccattctttcactccgttccaattccagtgtttcacacttcaaatccagcaaaccctattt |
52009541 |
T |
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| Q |
109 |
ccatttcccttcttctccaagagcagctttgttctgca-----------------aatgacgacgaaccctatgtcatcacaacccctctttactacgtc |
191 |
Q |
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| T |
52009540 |
tcatttcccttcttctcgaagagcagcttttttctgcaaatgcgccacttcctcaaatgatgaccaaccctatgtcatcacaacccctctttactacgtt |
52009441 |
T |
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| Q |
192 |
aacgcccctccccatatgggtagcgcttatt |
222 |
Q |
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| T |
52009440 |
aacgcccctcctcatatgggtagcgcctatt |
52009410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 5179679 - 5179630
Alignment:
| Q |
145 |
caaatgacgacgaaccctatgtcatcacaacccctctttactacgtcaac |
194 |
Q |
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| T |
5179679 |
caaatgacgacgaaccctatgtcatcacaacccctctttactacgtcaac |
5179630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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