View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20775_low_74 (Length: 217)

Name: NF20775_low_74
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20775_low_74
NF20775_low_74
[»] chr2 (8 HSPs)
chr2 (19-204)||(43808552-43808737)
chr2 (88-153)||(43456649-43456714)
chr2 (88-147)||(29430821-29430880)
chr2 (91-133)||(1625967-1626009)
chr2 (19-57)||(33267572-33267610)
chr2 (85-122)||(18525210-18525247)
chr2 (88-145)||(44606060-44606117)
chr2 (88-128)||(1741999-1742039)
[»] chr8 (8 HSPs)
chr8 (88-146)||(21130675-21130733)
chr8 (88-142)||(9700064-9700118)
chr8 (88-142)||(14949929-14949983)
chr8 (93-126)||(27412851-27412884)
chr8 (86-135)||(30191101-30191150)
chr8 (103-159)||(10923674-10923730)
chr8 (87-147)||(11376765-11376825)
chr8 (91-143)||(31915245-31915297)
[»] chr3 (12 HSPs)
chr3 (87-135)||(2175809-2175857)
chr3 (90-135)||(25182947-25182992)
chr3 (88-135)||(1810040-1810087)
chr3 (89-128)||(40880915-40880954)
chr3 (98-145)||(47584523-47584570)
chr3 (87-142)||(50015948-50016003)
chr3 (86-128)||(21574551-21574593)
chr3 (94-132)||(47132063-47132101)
chr3 (86-159)||(50004713-50004787)
chr3 (90-135)||(14548681-14548726)
chr3 (86-142)||(2304224-2304280)
chr3 (95-135)||(50211805-50211845)
[»] chr6 (10 HSPs)
chr6 (88-135)||(1669758-1669805)
chr6 (86-133)||(20368142-20368189)
chr6 (88-142)||(2460104-2460158)
chr6 (86-142)||(27693392-27693448)
chr6 (88-147)||(32577934-32577993)
chr6 (88-142)||(30863309-30863363)
chr6 (89-143)||(30865547-30865601)
chr6 (90-147)||(27857423-27857480)
chr6 (88-141)||(32917260-32917313)
chr6 (98-142)||(31668430-31668474)
[»] chr1 (10 HSPs)
chr1 (92-147)||(4033965-4034020)
chr1 (90-143)||(16980868-16980921)
chr1 (88-135)||(49692012-49692059)
chr1 (87-145)||(4757400-4757458)
chr1 (91-133)||(6557039-6557081)
chr1 (88-145)||(38867783-38867838)
chr1 (88-125)||(6262801-6262838)
chr1 (104-141)||(7707269-7707306)
chr1 (87-128)||(28467495-28467536)
chr1 (88-145)||(34536221-34536278)
[»] chr7 (8 HSPs)
chr7 (88-147)||(3500913-3500974)
chr7 (87-153)||(22387838-22387904)
chr7 (90-124)||(31149705-31149739)
chr7 (90-124)||(31167997-31168031)
chr7 (103-147)||(44151424-44151468)
chr7 (88-133)||(44808221-44808266)
chr7 (87-135)||(8094368-8094416)
chr7 (86-142)||(36537969-36538025)
[»] chr4 (8 HSPs)
chr4 (93-147)||(18628501-18628555)
chr4 (88-142)||(27123305-27123359)
chr4 (88-145)||(2996636-2996693)
chr4 (88-127)||(27725277-27725316)
chr4 (90-145)||(33534119-33534174)
chr4 (86-135)||(1554968-1555017)
chr4 (93-126)||(52428733-52428766)
chr4 (79-135)||(56007734-56007789)
[»] chr5 (13 HSPs)
chr5 (102-153)||(7550460-7550511)
chr5 (93-128)||(8090004-8090039)
chr5 (88-142)||(11297149-11297203)
chr5 (95-145)||(12407680-12407730)
chr5 (19-57)||(32197703-32197741)
chr5 (86-136)||(37611174-37611224)
chr5 (86-136)||(37787904-37787954)
chr5 (86-159)||(40534260-40534333)
chr5 (86-146)||(4619768-4619828)
chr5 (88-128)||(10152397-10152437)
chr5 (86-118)||(11406255-11406287)
chr5 (89-133)||(12242672-12242716)
chr5 (88-128)||(14980572-14980612)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 43808552 - 43808737
Alignment:
19 aagttaaactattttcatataagctgtttctataagctaataagctgaaaataacttatggacaatcgaacatgtcataagttattttcataagctctct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
43808552 aagttaaactattttcatataagctgtttctataagctaataagctgaaaataacttatggacaatcgaacatgtcataagttattttcataagctctct 43808651  T
119 caaatagtcttacaagtatttatgtcagtgaataaagtcaatctaaacatgttctcattataagttcactttaagtctcctttgct 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
43808652 caaatagtcttacaagtatttatgtcagtgaataaagtcaatctaaacatgttctcattataagttcactttaagtctcctttgct 43808737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 43456714 - 43456649
Alignment:
88 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataa 153  Q
    ||||||||| |||| |||||| ||||||| ||||| |||||||||||| ||||||| ||| |||||    
43456714 acatgtcatgagttgttttcacaagctctttcaaacagtcttacaagtgtttatgtgagtaaataa 43456649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 147
Target Start/End: Original strand, 29430821 - 29430880
Alignment:
88 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 147  Q
    |||||||||||| |||||||||||| |||  |||||||||  |||||| |||||||||||    
29430821 acatgtcataagctattttcataagttcttccaaatagtcccacaagtgtttatgtcagt 29430880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 133
Target Start/End: Original strand, 1625967 - 1626009
Alignment:
91 tgtcataagttattttcataagctctctcaaatagtcttacaa 133  Q
    ||||||||| || ||||||||| ||||||||||||||||||||    
1625967 tgtcataagctactttcataagttctctcaaatagtcttacaa 1626009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 33267610 - 33267572
Alignment:
19 aagttaaactattttcatataagctgtttctataagcta 57  Q
    |||||||||| |||||||||||||||||| |||||||||    
33267610 aagttaaactgttttcatataagctgtttttataagcta 33267572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 122
Target Start/End: Complemental strand, 18525247 - 18525210
Alignment:
85 cgaacatgtcataagttattttcataagctctctcaaa 122  Q
    |||| |||||||||| ||||||||||||||||||||||    
18525247 cgaatatgtcataagctattttcataagctctctcaaa 18525210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 44606117 - 44606060
Alignment:
88 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 145  Q
    |||||||||||||| |||||||||| |||  |||| |||| |||||||| ||||||||    
44606117 acatgtcataagttgttttcataagttcttccaaacagtcgtacaagtacttatgtca 44606060  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 1742039 - 1741999
Alignment:
88 acatgtcataagttattttcataagctctctcaaatagtct 128  Q
    |||||||||||||| ||| ||||||||||| ||||||||||    
1742039 acatgtcataagttgtttccataagctctcccaaatagtct 1741999  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 21130675 - 21130733
Alignment:
88 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcag 146  Q
    |||||||| ||| ||||| |||||||||||||||| ||||| |||||||||||||||||    
21130675 acatgtcaaaagctatttccataagctctctcaaacagtctcacaagtatttatgtcag 21130733  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 142
Target Start/End: Original strand, 9700064 - 9700118
Alignment:
88 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 142  Q
    ||||||||||| ||  ||||| ||||||||||||||||||| |||||| ||||||    
9700064 acatgtcataaattgatttcacaagctctctcaaatagtctcacaagtgtttatg 9700118  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 142
Target Start/End: Original strand, 14949929 - 14949983
Alignment:
88 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 142  Q
    ||||||||||||||||||||||||||||||  ||| ||||| |||| | ||||||    
14949929 acatgtcataagttattttcataagctctcctaaacagtctcacaaatgtttatg 14949983  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 126
Target Start/End: Complemental strand, 27412884 - 27412851
Alignment:
93 tcataagttattttcataagctctctcaaatagt 126  Q
    ||||||||| ||||||||||||||||||||||||    
27412884 tcataagttgttttcataagctctctcaaatagt 27412851  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 30191150 - 30191101
Alignment:
86 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagt 135  Q
    |||||||||||||||| ||| ||||||||||| |||| ||||| ||||||    
30191150 gaacatgtcataagttgtttccataagctctcccaaacagtctaacaagt 30191101  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 10923674 - 10923730
Alignment:
103 ttttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataaagtcaa 159  Q
    ||||||||| ||||||||||| ||||||||||| |||||| || | |||||| ||||    
10923674 ttttcataaactctctcaaattgtcttacaagtgtttatgccactaaataaactcaa 10923730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 11376765 - 11376825
Alignment:
87 aacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 147  Q
    ||||||||| ||| |||||||||||| |||| |||||||||| ||||| | |||| |||||    
11376765 aacatgtcacaagctattttcataagttctcccaaatagtctcacaagaacttatatcagt 11376825  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 31915297 - 31915245
Alignment:
91 tgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgt 143  Q
    ||||||||||| |||  ||||||| ||||||| ||||| ||||||||||||||    
31915297 tgtcataagttgtttgtataagctttctcaaacagtctcacaagtatttatgt 31915245  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 2175857 - 2175809
Alignment:
87 aacatgtcataagttattttcataagctctctcaaatagtcttacaagt 135  Q
    ||||||||||||||| ||||||||| || ||||||||||||||||||||    
2175857 aacatgtcataagttgttttcataaactatctcaaatagtcttacaagt 2175809  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 25182992 - 25182947
Alignment:
90 atgtcataagttattttcataagctctctcaaatagtcttacaagt 135  Q
    |||||||||||| |||||||||||||||||||| ||||| ||||||    
25182992 atgtcataagttgttttcataagctctctcaaacagtctcacaagt 25182947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 135
Target Start/End: Original strand, 1810040 - 1810087
Alignment:
88 acatgtcataagttattttcataagctctctcaaatagtcttacaagt 135  Q
    |||||||||||||| ||| | |||||||||||||||||||| ||||||    
1810040 acatgtcataagttgtttccgtaagctctctcaaatagtctcacaagt 1810087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 40880954 - 40880915
Alignment:
89 catgtcataagttattttcataagctctctcaaatagtct 128  Q
    ||||||||||||| |||||||||||||||||||| |||||    
40880954 catgtcataagttgttttcataagctctctcaaacagtct 40880915  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 47584523 - 47584570
Alignment:
98 agttattttcataagctctctcaaatagtcttacaagtatttatgtca 145  Q
    |||| |||||||||||||||||||||||||| ||||||  ||||||||    
47584523 agttcttttcataagctctctcaaatagtctcacaagtgcttatgtca 47584570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 50015948 - 50016003
Alignment:
87 aacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 142  Q
    ||||||||||| ||| |||||||||| ||||||||| ||||| |||||| ||||||    
50015948 aacatgtcatacgttcttttcataagttctctcaaacagtctcacaagtgtttatg 50016003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 21574551 - 21574593
Alignment:
86 gaacatgtcataagttattttcataagctctctcaaatagtct 128  Q
    |||||||||||||||| ||||||||||||||| |||| |||||    
21574551 gaacatgtcataagttgttttcataagctctcccaaacagtct 21574593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 47132063 - 47132101
Alignment:
94 cataagttattttcataagctctctcaaatagtcttaca 132  Q
    |||||||| |||||||||| |||||||||||||||||||    
47132063 cataagttgttttcataagttctctcaaatagtcttaca 47132101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 159
Target Start/End: Original strand, 50004713 - 50004787
Alignment:
86 gaacatgtcataagttattttcataa-gctctctcaaatagtcttacaagtatttatgtcagtgaataaagtcaa 159  Q
    |||||||||||||||| ||| ||||| || |||||||| |||||||||| |  |||||||||| |||||| ||||    
50004713 gaacatgtcataagttgtttccataaggccctctcaaacagtcttacaattgcttatgtcagtaaataaactcaa 50004787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 14548726 - 14548681
Alignment:
90 atgtcataagttattttcataagctctctcaaatagtcttacaagt 135  Q
    |||||||| ||| |||||||||||||||||||| ||||| ||||||    
14548726 atgtcatacgttgttttcataagctctctcaaacagtctcacaagt 14548681  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 2304280 - 2304224
Alignment:
86 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 142  Q
    ||||||||||||||||  ||||||||  ||||||||||||| | |||||| ||||||    
2304280 gaacatgtcataagttgctttcataatttctctcaaatagtttcacaagtgtttatg 2304224  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 50211805 - 50211845
Alignment:
95 ataagttattttcataagctctctcaaatagtcttacaagt 135  Q
    ||||||| |||||||||| ||||||||| ||||||||||||    
50211805 ataagttgttttcataagttctctcaaacagtcttacaagt 50211845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 135
Target Start/End: Complemental strand, 1669805 - 1669758
Alignment:
88 acatgtcataagttattttcataagctctctcaaatagtcttacaagt 135  Q
    |||||||||||||| ||||||||||||||| ||| |||||||||||||    
1669805 acatgtcataagttgttttcataagctctcccaattagtcttacaagt 1669758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 20368189 - 20368142
Alignment:
86 gaacatgtcataagttattttcataagctctctcaaatagtcttacaa 133  Q
    |||||||||||||||| |||||||||| |||| |||||||||||||||    
20368189 gaacatgtcataagttgttttcataagttctcccaaatagtcttacaa 20368142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 142
Target Start/End: Complemental strand, 2460158 - 2460104
Alignment:
88 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 142  Q
    |||||||||||||| ||| |||||||||||||||| ||||| ||||||| |||||    
2460158 acatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatg 2460104  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 27693448 - 27693392
Alignment:
86 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 142  Q
    |||||||||||||||| ||| |||||  ||||||||||||||| ||||||| |||||    
27693448 gaacatgtcataagttgtttccataaattctctcaaatagtctcacaagtacttatg 27693392  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 147
Target Start/End: Complemental strand, 32577993 - 32577934
Alignment:
88 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 147  Q
    |||||||||||||| |||||||||||||||||||| | | |  |||||||||||| ||||    
32577993 acatgtcataagttgttttcataagctctctcaaacaatgtcccaagtatttatgccagt 32577934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 142
Target Start/End: Original strand, 30863309 - 30863363
Alignment:
88 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 142  Q
    |||||||||||||| ||||||||||||||  |||| ||||| |||||| ||||||    
30863309 acatgtcataagttgttttcataagctctaccaaagagtctaacaagtgtttatg 30863363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 30865547 - 30865601
Alignment:
89 catgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgt 143  Q
    ||||||||||||||||| |||||||||||| |||  |||| |||||| |||||||    
30865547 catgtcataagttatttccataagctctcttaaactgtctaacaagtgtttatgt 30865601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 27857423 - 27857480
Alignment:
90 atgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 147  Q
    |||||||||||| ||||||||||||||| |||| ||| | |||||| | |||||||||    
27857423 atgtcataagttgttttcataagctctcccaaacagtttcacaagtgtctatgtcagt 27857480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 32917260 - 32917313
Alignment:
88 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttat 141  Q
    |||||||||||||| ||| ||||||||||| |||| ||||| |||||| |||||    
32917260 acatgtcataagttgtttccataagctctcccaaacagtctcacaagtgtttat 32917313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 31668430 - 31668474
Alignment:
98 agttattttcataagctctctcaaatagtcttacaagtatttatg 142  Q
    |||| ||||||||||||||||| |||||||| |||||| ||||||    
31668430 agttgttttcataagctctctctaatagtctcacaagtgtttatg 31668474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 4034020 - 4033965
Alignment:
92 gtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 147  Q
    ||||||||||||||||||||||||||||||| | ||| |||||| |||||| ||||    
4034020 gtcataagttattttcataagctctctcaaacaatctcacaagtgtttatgccagt 4033965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 16980868 - 16980921
Alignment:
90 atgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgt 143  Q
    ||||| |||||| ||| |||||||||||||||||||||| ||||||| ||||||    
16980868 atgtcgtaagttgtttccataagctctctcaaatagtctcacaagtacttatgt 16980921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 135
Target Start/End: Complemental strand, 49692059 - 49692012
Alignment:
88 acatgtcataagttattttcataagctctctcaaatagtcttacaagt 135  Q
    |||||||||||| |||||||||||| ||||||||| ||||| ||||||    
49692059 acatgtcataagctattttcataagttctctcaaacagtctcacaagt 49692012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 4757400 - 4757458
Alignment:
87 aacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 145  Q
    ||||||||||||||| |||||||||| |||  ||||| |||| |||||| |||||||||    
4757400 aacatgtcataagttgttttcataagttctgccaaatggtctcacaagtgtttatgtca 4757458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 133
Target Start/End: Original strand, 6557039 - 6557081
Alignment:
91 tgtcataagttattttcataagctctctcaaatagtcttacaa 133  Q
    ||||||||| |||||||||||| ||||||||||||||| ||||    
6557039 tgtcataagctattttcataagttctctcaaatagtctcacaa 6557081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 38867838 - 38867783
Alignment:
88 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 145  Q
    |||| ||||||||||||| |||||||||||||||| ||||  |||||| |||||||||    
38867838 acatatcataagttatttccataagctctctcaaacagtc--acaagtgtttatgtca 38867783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 6262801 - 6262838
Alignment:
88 acatgtcataagttattttcataagctctctcaaatag 125  Q
    |||| ||||||||||||||||||||||||| |||||||    
6262801 acatatcataagttattttcataagctctcccaaatag 6262838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 7707269 - 7707306
Alignment:
104 tttcataagctctctcaaatagtcttacaagtatttat 141  Q
    |||||||| |||||||||||| ||||||||||||||||    
7707269 tttcataaactctctcaaataatcttacaagtatttat 7707306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 28467495 - 28467536
Alignment:
87 aacatgtcataagttattttcataagctctctcaaatagtct 128  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||    
28467495 aacatgtcataagttatttccataatctctcccaaatagtct 28467536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 34536221 - 34536278
Alignment:
88 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 145  Q
    |||||||||||| | |||||||||||  ||||||| ||||| |||||| |||||||||    
34536221 acatgtcataagctgttttcataagccatctcaaacagtctcacaagtgtttatgtca 34536278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 147
Target Start/End: Complemental strand, 3500974 - 3500913
Alignment:
88 acatgtcataagttattttcataagctctctcaaatagtctta--caagtatttatgtcagt 147  Q
    |||||||||||||||||| ||||||||||| ||||||| ||||  ||||| |||||||||||    
3500974 acatgtcataagttatttccataagctctcacaaatagacttacgcaagtttttatgtcagt 3500913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 22387904 - 22387838
Alignment:
87 aacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataa 153  Q
    |||||| |||||||| ||||||||||||||| |||| ||||| ||| || ||||||||||| |||||    
22387904 aacatgccataagttgttttcataagctctcccaaacagtctcacacgtgtttatgtcagtaaataa 22387838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 124
Target Start/End: Original strand, 31149705 - 31149739
Alignment:
90 atgtcataagttattttcataagctctctcaaata 124  Q
    |||||||||||||||||||||||||||||||||||    
31149705 atgtcataagttattttcataagctctctcaaata 31149739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 124
Target Start/End: Original strand, 31167997 - 31168031
Alignment:
90 atgtcataagttattttcataagctctctcaaata 124  Q
    |||||||||||||||||||||||||||||||||||    
31167997 atgtcataagttattttcataagctctctcaaata 31168031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 44151468 - 44151424
Alignment:
103 ttttcataagctctctcaaatagtcttacaagtatttatgtcagt 147  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||||    
44151468 ttttcataagctctctcaaataatctcacaagtacttatgtcagt 44151424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 44808221 - 44808266
Alignment:
88 acatgtcataagttattttcataagctctctcaaatagtcttacaa 133  Q
    ||||||||||||||||||||||||| ||| ||||| ||||| ||||    
44808221 acatgtcataagttattttcataaggtctatcaaacagtctgacaa 44808266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 8094368 - 8094416
Alignment:
87 aacatgtcataagttattttcataagctctctcaaatagtcttacaagt 135  Q
    ||||||||||||| | |||||||||  ||||||||||||||| ||||||    
8094368 aacatgtcataagctgttttcataaaatctctcaaatagtctcacaagt 8094416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 36537969 - 36538025
Alignment:
86 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 142  Q
    |||||||||||||||| ||| |||||| ||||||||| | ||| |||||| ||||||    
36537969 gaacatgtcataagttgtttccataagttctctcaaacaatctcacaagtgtttatg 36538025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 18628555 - 18628501
Alignment:
93 tcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 147  Q
    ||||||||| ||||||||||||||| |||| ||||| |||||| |||||||||||    
18628555 tcataagttgttttcataagctctcccaaacagtctcacaagtgtttatgtcagt 18628501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 142
Target Start/End: Complemental strand, 27123359 - 27123305
Alignment:
88 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 142  Q
    |||||||||||||| ||| |||||||||||||||| ||||| ||||||| |||||    
27123359 acatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatg 27123305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 2996636 - 2996693
Alignment:
88 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 145  Q
    |||||||||||||| |||||||||||||||||||| ||||| | ||||  ||||||||    
2996636 acatgtcataagttgttttcataagctctctcaaacagtctcaaaagtgcttatgtca 2996693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 127
Target Start/End: Original strand, 27725277 - 27725316
Alignment:
88 acatgtcataagttattttcataagctctctcaaatagtc 127  Q
    |||||||||||||||||| |||||||||||||||| ||||    
27725277 acatgtcataagttatttccataagctctctcaaacagtc 27725316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 33534174 - 33534119
Alignment:
90 atgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 145  Q
    |||||| || || |||||||||||||||||||||| ||| ||||||| ||||||||    
33534174 atgtcacaatttgttttcataagctctctcaaatactctcacaagtacttatgtca 33534119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 1555017 - 1554968
Alignment:
86 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagt 135  Q
    |||||||||||||| |||||||||||  ||||||||| |||||| |||||    
1555017 gaacatgtcataagctattttcataaattctctcaaacagtcttgcaagt 1554968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 126
Target Start/End: Original strand, 52428733 - 52428766
Alignment:
93 tcataagttattttcataagctctctcaaatagt 126  Q
    ||||||||| ||||||||||||||||||||||||    
52428733 tcataagttgttttcataagctctctcaaatagt 52428766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 56007734 - 56007789
Alignment:
79 gacaatcgaacatgtcataagttattttcataagctctctcaaatagtcttacaagt 135  Q
    ||||||||| |||||||||||||| ||  || |||||||||||| ||||||||||||    
56007734 gacaatcga-catgtcataagttacttgtattagctctctcaaacagtcttacaagt 56007789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 7550511 - 7550460
Alignment:
102 attttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataa 153  Q
    |||| |||||||||||||||| ||||| ||||||| ||||||||||| ||||    
7550511 atttccataagctctctcaaagagtctcacaagtaattatgtcagtggataa 7550460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 8090004 - 8090039
Alignment:
93 tcataagttattttcataagctctctcaaatagtct 128  Q
    ||||||||| ||||||||||||||||||||||||||    
8090004 tcataagttgttttcataagctctctcaaatagtct 8090039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 142
Target Start/End: Complemental strand, 11297203 - 11297149
Alignment:
88 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 142  Q
    ||||||| |||||| ||| |||||||||| ||||| |||||||||||| ||||||    
11297203 acatgtcttaagttgtttccataagctctttcaaacagtcttacaagtgtttatg 11297149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 145
Target Start/End: Complemental strand, 12407730 - 12407680
Alignment:
95 ataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 145  Q
    |||||| |||||||||||||||||||||  |||| |||||| |||||||||    
12407730 ataagtcattttcataagctctctcaaaccgtctcacaagtgtttatgtca 12407680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 32197703 - 32197741
Alignment:
19 aagttaaactattttcatataagctgtttctataagcta 57  Q
    |||| ||||||||||||||||||||||||| ||||||||    
32197703 aagtcaaactattttcatataagctgtttccataagcta 32197741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 37611224 - 37611174
Alignment:
86 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagta 136  Q
    |||||||||| ||||| |||||||||||||||||||| | ||| |||||||    
37611224 gaacatgtcacaagttgttttcataagctctctcaaacaatctcacaagta 37611174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 37787954 - 37787904
Alignment:
86 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagta 136  Q
    |||||||||| ||||| |||||||||||||||||||| | ||| |||||||    
37787954 gaacatgtcacaagttgttttcataagctctctcaaacaatctcacaagta 37787904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 159
Target Start/End: Original strand, 40534260 - 40534333
Alignment:
86 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataaagtcaa 159  Q
    |||||||||||||| || || |||||||||||  ||| ||| | |||||| ||||||||||| |||||| ||||    
40534260 gaacatgtcataagctacttccataagctctcctaaacagtatcacaagtgtttatgtcagtaaataaactcaa 40534333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 4619768 - 4619828
Alignment:
86 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcag 146  Q
    ||||||||||| |||| ||||||||||||||| |||| ||| || |||||  |||||||||    
4619768 gaacatgtcattagttgttttcataagctctcccaaacagtgttgcaagtgcttatgtcag 4619828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 10152397 - 10152437
Alignment:
88 acatgtcataagttattttcataagctctctcaaatagtct 128  Q
    |||||||||||||| |||||||||||||||  |||||||||    
10152397 acatgtcataagttgttttcataagctctccaaaatagtct 10152437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 118
Target Start/End: Original strand, 11406255 - 11406287
Alignment:
86 gaacatgtcataagttattttcataagctctct 118  Q
    |||||| ||||||||||||||||||||||||||    
11406255 gaacatatcataagttattttcataagctctct 11406287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 12242716 - 12242672
Alignment:
89 catgtcataagttattttcataagctctctcaaatagtcttacaa 133  Q
    ||||||||||||| ||| |||||||||||||||||| ||| ||||    
12242716 catgtcataagttttttccataagctctctcaaataatctcacaa 12242672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 14980572 - 14980612
Alignment:
88 acatgtcataagttattttcataagctctctcaaatagtct 128  Q
    ||||||||||||| ||||| ||||||||||||||| |||||    
14980572 acatgtcataagtcatttttataagctctctcaaacagtct 14980612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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