View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20775_low_75 (Length: 217)

Name: NF20775_low_75
Description: NF20775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20775_low_75
NF20775_low_75
[»] chr6 (3 HSPs)
chr6 (45-153)||(7875046-7875153)
chr6 (45-191)||(7884897-7885042)
chr6 (45-153)||(7880293-7880399)


Alignment Details
Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 45 - 153
Target Start/End: Complemental strand, 7875153 - 7875046
Alignment:
Q  45 atgttttcctccttcaattcttaagggaagagggccatagtgatatataatttgatcgagagaaaagtaagttttaccaagattatttcaattagaattt 144  Q
    |||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  7875153 atgttttccttcttcaattcataagggaagatggccatagtgatatataatttgatcgagagaaaagtaaattttaccaagattatttcaattagaa-tt 7875055  T
Q  145 tacaatcaa 153  Q
    |||||||||    
T  7875054 tacaatcaa 7875046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 45 - 191
Target Start/End: Complemental strand, 7885042 - 7884897
Alignment:
Q  45 atgttttcctccttcaattcttaagggaagagggccatagtgatatataatttgatcgagagaaaagtaagttttaccaagattatttcaattagaattt 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| | |||| ||||||| ||||||||||||| ||    
T  7885042 atgttttcctccttcaattcttaagggaagagggccatagtgatatataatttgatcgagaggtaagtgaattttgccaagatgatttcaattagaa-tt 7884944  T
Q  145 tacaatcaaactctctaaaatgatttagtactaaccgaatctcatta 191  Q
    |||||||| | | ||||||||| |||| || |||| |||||| ||||    
T  7884943 tacaatcatattatctaaaatggtttattattaactgaatcttatta 7884897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 45 - 153
Target Start/End: Complemental strand, 7880399 - 7880293
Alignment:
Q  45 atgttttcctccttcaattcttaagggaagagggccatagtgatatataatttgatcgagagaaaagtaagttttaccaagattatttcaattagaattt 144  Q
    |||||||||| ||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  7880399 atgttttccttcttcaattcataagg-aagatggccatagtgatatataatttgatcgagagaaaagtaaattttaccaagattatttcaattagaa-tt 7880302  T
Q  145 tacaatcaa 153  Q
    |||||||||    
T  7880301 tacaatcaa 7880293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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