View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20776_high_1 (Length: 792)
Name: NF20776_high_1
Description: NF20776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20776_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 260 - 779
Target Start/End: Original strand, 40706905 - 40707425
Alignment:
| Q |
260 |
ttatgacctaactcccgatcgtttaaattagaaagttacgatctgatccacatcaacaatacaacagattcaagttatgagacagttcagaagttacaac |
359 |
Q |
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| T |
40706905 |
ttatgacctaactcccgatcgtttaaattaaaaagttacgatctgatccatatcaacaatacaacagattcaagttatgagacagttcatgagttacaac |
40707004 |
T |
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| Q |
360 |
ccgatccaagatcaggacctaactcccgatccatactagaacccttgagaaacacataagttttggaagaaaaagtttacaagaaaaattgtactcttga |
459 |
Q |
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| T |
40707005 |
ccgatccaagatcaggacctaactcccgatccatactagaacccttgggaaacacataagttttggaagaaaaagtttacaagaaaaattgtactcttga |
40707104 |
T |
|
| Q |
460 |
aatggactcatttatggaaaactatcatagaaaacttataatgaccgaagtgtaattcattgttaacatccactatgacaagaataaatgaataagcaaa |
559 |
Q |
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| T |
40707105 |
aatggactcatttatggaaaactatcatagaaaacttataatgaccgaagtgtaattcattgttaacatccactatgacaagaataaatgaataagcaaa |
40707204 |
T |
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| Q |
560 |
tcatttgggttatggagtggcatggcatttaggttacaaaaattatcaaagtccaaccgtctcagcttagcataaccataataacctannnnnnncttat |
659 |
Q |
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| T |
40707205 |
tcatttgggttatggagtggcatggcatttaggttacaaaaattatcaaagtccaaccgtctcagctcagcataaccataataacctatttttttcttat |
40707304 |
T |
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| Q |
660 |
aatcttctatcataaattgacatgatacactcggttaataaacaggaatctaaatat-nnnnnnnngaggcttgtatacaataagtgattgaatccacat |
758 |
Q |
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| T |
40707305 |
aatcttctatcataaattgacatgatacactcggttaataaacaggaatctaaatataaaaaaaaagaggcttgtatacaataagtgattgaatccacat |
40707404 |
T |
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| Q |
759 |
tataaaacttcaagaataatc |
779 |
Q |
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| T |
40707405 |
tataaaacttcaagaataatc |
40707425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 40706629 - 40706884
Alignment:
| Q |
18 |
agtaagtacatgtaccccaaagaaaaaattatccaattttgtgtgtgtgaaaatttcattccttagtacttttattagaagacaaagttaaccca----- |
112 |
Q |
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| T |
40706629 |
agtaagtacatgtaccccaaagaaaaaattatccaattttgtgtgtgtgaaaatttcattccttagtacttttattagaagacaaagttaacccacacag |
40706728 |
T |
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| Q |
113 |
------aatgaggaaatatacaagtagaggtgttaaaccatgaacaattgggctcaagccaaaaagtgactggccttgtttcttactcttctaacaaaat |
206 |
Q |
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| T |
40706729 |
caaacaaatgaggaaatatacaagtagaggtgttaaaccatgaacaattgggctcaagccaaaaagtgactggccttgtttcttactcttctaacaaaat |
40706828 |
T |
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| Q |
207 |
tataaatttgatttggattgctcatatccctctaaaaaattctaaaatattcctta |
262 |
Q |
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| T |
40706829 |
tataaatttgatttggattgctcatatccccctaaaaaattctaaaatattcctta |
40706884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 451 - 501
Target Start/End: Complemental strand, 40797423 - 40797373
Alignment:
| Q |
451 |
tactcttgaaatggactcatttatggaaaactatcatagaaaacttataat |
501 |
Q |
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| T |
40797423 |
tactcttgaaacgggctcatttgttgaaaactatcatagataacttataat |
40797373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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