View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20776_high_3 (Length: 477)
Name: NF20776_high_3
Description: NF20776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20776_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 4 - 458
Target Start/End: Complemental strand, 22022920 - 22022464
Alignment:
| Q |
4 |
atgtcgaagaatatgaataactatgcacaagaagatcacaaaatacaacactataaaattgaagggttaatttaattatcatattttttcatcaaattct |
103 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22022920 |
atgtcaaacaatatgaataactatgcacaagaagatcacaaaatacaacactataaaattgaagggttaatttaattatcatattttttcatcaaattct |
22022821 |
T |
|
| Q |
104 |
catcgtcaatcctctccatgttcgcttgnnnnnnnggtgaccaaacctctcaagaaatttcatttctcaaaattttcaaccttttccaattccgtttgtt |
203 |
Q |
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|||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22022820 |
catcttcaatcctctccatgttcacttgaaaaaaaggtgaccaaacctctcaagaaatttcatttctcaaaattttcaaccttttccaattccgtttgtt |
22022721 |
T |
|
| Q |
204 |
caatatgtgagtctagtattttgaagtgcataatatcagtgttgtttctcacttatcagaattgcctccaaattttcaggacatcgaaaggatcattctt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22022720 |
caatatgtgagtctagtattttgaagtgcataatatcagtgttgtttctcacttatcagaattgcctccaaattttcaggacattgaaaggatcattctt |
22022621 |
T |
|
| Q |
304 |
cctagcataatcaatttgtagaaacaccaaaatttgtcaaataaggtattaagggggttttgactcttggatacaatggatagggagtaggtttatcaaa |
403 |
Q |
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||||||||||||||| | |||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
22022620 |
cctagcataatcaatctatagaaagaccaaaacttgtcaaataaggtattaaggggggtttgactcttggatacaatggatagggagtaggtttatcaaa |
22022521 |
T |
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| Q |
404 |
tagggatgtcccatgatccttagg--tttcacgattatcgattttgttatgagaggt |
458 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22022520 |
tagggatgtcccatgatccttaggtttttcacgattatcgattttgttatgagaggt |
22022464 |
T |
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