View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20776_low_2 (Length: 521)
Name: NF20776_low_2
Description: NF20776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20776_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 10 - 419
Target Start/End: Original strand, 43823415 - 43823812
Alignment:
| Q |
10 |
catcatcataaccactaccactaccgccaccaccatctgcaatatttaaaataatatagtaacaaatatgttattaatataatactgaaatnnnnnnnca |
109 |
Q |
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| T |
43823415 |
catcgtcataaccactaccaccaccgccaccaccatctgcaatatttaaaataatatagtaacaaatatgttattaatataatactgaaataaaaaaaca |
43823514 |
T |
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| Q |
110 |
tcaatgttactatgtaggccacctggaccgggagagccgccaggaggatcagggccaccatctggattgtcgtcaggtgcatcaggaagaagttcatcgt |
209 |
Q |
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| T |
43823515 |
tcaatgttactatgtaggccacctggaccgggagagccgccagga------------ccatctggattgtcgtcaggtgcatcaggaagaagttcatcgt |
43823602 |
T |
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| Q |
210 |
cagaggcaacttcatggatgatatcagagtcatcaatgaaaacatcattgttgtcttcgtcttcatcgttgttgaattcatcatcactatgatgatttgg |
309 |
Q |
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| T |
43823603 |
cagaggcaacttcatggatgatatcagagtcatcaatgaaaacatcattgttgtcttcgtcttcatcgttgttgaattcatcatcactatgatgatttgg |
43823702 |
T |
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| Q |
310 |
atcactcattgtattgcttaaaattttcaagtctataaacctataagacaaacaaagtaagacaaaattattgaataacgaagttataaattaaaatatc |
409 |
Q |
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| T |
43823703 |
atcactcattgtattgcttaaaattttcaagtctataaacctataagacaaacaaagtaagacaaaattattgaataactaagttataaattaaaatctt |
43823802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 457 - 506
Target Start/End: Original strand, 43823809 - 43823858
Alignment:
| Q |
457 |
ctttgtagaaattggaaaagaggagaatatgaatgaagcagtgggaaaag |
506 |
Q |
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| T |
43823809 |
ctttgtagaaatcggaaaagaggagaatatgaatgaagcagtgggaaaag |
43823858 |
T |
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