View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20777_high_16 (Length: 250)
Name: NF20777_high_16
Description: NF20777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20777_high_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 40060907 - 40060666
Alignment:
| Q |
9 |
agcaaaggcagcagaagcaccaacagaagtgttggaagacatattgttggtggtagtggccaatggaggccagcattacaaagcattgcagaatttggaa |
108 |
Q |
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| T |
40060907 |
agcaatggcagcagaagcaccaacagaagtgttggaagacatattgttggtggtagtggccaatggaggccagcattacaaagcattgcagaatttggaa |
40060808 |
T |
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| Q |
109 |
cttgaactcacttaattactccctcactcccataaataaatcttcctttaattatgttccttccaatataattcatgtaattgcccccttcttaatttgt |
208 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40060807 |
cttgaactcacttaattagtccctcactcccataaataaatcttcctttaattatgttccttccaatataattcatgtaattgcccccttcttaatttgt |
40060708 |
T |
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| Q |
209 |
agtagtccattatacataggttttgtgttaaatgttgtatgc |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
40060707 |
agtagtccattatacataggttttgtgttaaatgttgtatgc |
40060666 |
T |
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