View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20777_high_2 (Length: 755)

Name: NF20777_high_2
Description: NF20777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20777_high_2
NF20777_high_2
[»] chr6 (19 HSPs)
chr6 (169-508)||(29100772-29101111)
chr6 (169-508)||(29062836-29063175)
chr6 (169-508)||(29117690-29118029)
chr6 (169-299)||(29120620-29120750)
chr6 (645-731)||(29915670-29915756)
chr6 (642-731)||(23936519-23936608)
chr6 (56-113)||(29063457-29063514)
chr6 (56-109)||(29101397-29101450)
chr6 (56-113)||(29118311-29118368)
chr6 (56-109)||(29121036-29121089)
chr6 (642-731)||(34439344-34439433)
chr6 (660-712)||(29927354-29927406)
chr6 (642-713)||(32258858-32258929)
chr6 (668-713)||(19689809-19689854)
chr6 (642-731)||(26669034-26669122)
chr6 (531-574)||(2810114-2810157)
chr6 (678-713)||(30627227-30627262)
chr6 (660-713)||(8052480-8052533)
chr6 (678-731)||(12828653-12828705)
[»] chr1 (23 HSPs)
chr1 (642-731)||(1430472-1430561)
chr1 (645-731)||(1428994-1429080)
chr1 (660-713)||(84472-84525)
chr1 (642-731)||(5317513-5317602)
chr1 (660-713)||(6332312-6332365)
chr1 (666-715)||(43105562-43105611)
chr1 (660-731)||(30006258-30006328)
chr1 (660-731)||(40060860-40060930)
chr1 (660-711)||(43929831-43929882)
chr1 (660-732)||(50349811-50349882)
chr1 (377-435)||(4259802-4259860)
chr1 (377-435)||(4263424-4263482)
chr1 (665-731)||(24040983-24041048)
chr1 (660-713)||(10690909-10690962)
chr1 (662-731)||(52403604-52403672)
chr1 (678-717)||(6377258-6377297)
chr1 (662-713)||(11650203-11650254)
chr1 (535-590)||(38040350-38040405)
chr1 (535-590)||(49944852-49944907)
chr1 (647-713)||(50158259-50158325)
chr1 (549-590)||(1811279-1811320)
chr1 (531-576)||(34662715-34662760)
chr1 (660-713)||(48259817-48259870)
[»] chr5 (17 HSPs)
chr5 (642-731)||(15400300-15400389)
chr5 (642-731)||(14979987-14980075)
chr5 (642-731)||(4967427-4967515)
chr5 (642-731)||(31557276-31557365)
chr5 (660-731)||(12167564-12167634)
chr5 (531-590)||(1138287-1138346)
chr5 (531-590)||(27488366-27488425)
chr5 (660-713)||(166603-166656)
chr5 (660-713)||(36660571-36660624)
chr5 (660-717)||(36783497-36783554)
chr5 (660-713)||(4371496-4371549)
chr5 (660-713)||(4751484-4751537)
chr5 (664-709)||(24436498-24436543)
chr5 (531-584)||(26327561-26327614)
chr5 (672-717)||(33741768-33741813)
chr5 (549-582)||(34297262-34297295)
chr5 (553-590)||(38394447-38394484)
[»] chr8 (22 HSPs)
chr8 (642-731)||(27109756-27109845)
chr8 (658-731)||(6839335-6839407)
chr8 (531-584)||(13831430-13831483)
chr8 (662-731)||(32737893-32737961)
chr8 (662-713)||(24732093-24732144)
chr8 (531-584)||(24915239-24915292)
chr8 (660-713)||(38329009-38329062)
chr8 (666-713)||(2812921-2812968)
chr8 (655-713)||(32061408-32061466)
chr8 (642-731)||(2067828-2067916)
chr8 (660-713)||(9022541-9022594)
chr8 (646-715)||(11335979-11336048)
chr8 (655-731)||(7612626-7612700)
chr8 (541-584)||(3236355-3236398)
chr8 (662-717)||(36915506-36915561)
chr8 (660-713)||(3095467-3095520)
chr8 (549-590)||(10184639-10184680)
chr8 (553-590)||(10839782-10839819)
chr8 (678-731)||(22601263-22601315)
chr8 (660-713)||(32326679-32326732)
chr8 (535-584)||(42123040-42123089)
chr8 (660-713)||(45187250-45187303)
[»] chr4 (29 HSPs)
chr4 (658-713)||(32140941-32140996)
chr4 (658-715)||(51737277-51737334)
chr4 (642-731)||(56422938-56423026)
chr4 (655-731)||(43421076-43421151)
chr4 (644-731)||(52732716-52732802)
chr4 (663-731)||(34360130-34360197)
chr4 (531-590)||(55190736-55190795)
chr4 (655-716)||(3093487-3093548)
chr4 (660-713)||(29840197-29840250)
chr4 (642-731)||(34096141-34096229)
chr4 (660-713)||(36805407-36805460)
chr4 (642-731)||(44855369-44855457)
chr4 (666-731)||(51930701-51930765)
chr4 (550-590)||(16412253-16412293)
chr4 (664-712)||(45520419-45520467)
chr4 (549-584)||(10306456-10306491)
chr4 (531-590)||(20459310-20459369)
chr4 (642-713)||(31817138-31817209)
chr4 (531-590)||(47866055-47866114)
chr4 (660-731)||(54512148-54512218)
chr4 (660-710)||(30492865-30492915)
chr4 (665-731)||(39671068-39671133)
chr4 (642-731)||(50072376-50072467)
chr4 (678-731)||(37445785-37445837)
chr4 (665-714)||(38761788-38761837)
chr4 (660-713)||(42672531-42672584)
chr4 (664-713)||(45903377-45903426)
chr4 (553-590)||(53225736-53225773)
chr4 (660-715)||(56556236-56556288)
[»] chr7 (18 HSPs)
chr7 (653-731)||(18886774-18886851)
chr7 (660-731)||(34002086-34002157)
chr7 (645-731)||(36447550-36447635)
chr7 (660-731)||(3680877-3680947)
chr7 (660-731)||(17869366-17869436)
chr7 (677-716)||(30833066-30833105)
chr7 (535-590)||(36245450-36245505)
chr7 (531-581)||(16861540-16861590)
chr7 (645-731)||(41905874-41905959)
chr7 (667-715)||(32873127-32873175)
chr7 (664-731)||(26527356-26527422)
chr7 (531-590)||(27231903-27231962)
chr7 (535-590)||(28677391-28677446)
chr7 (535-590)||(45533249-45533304)
chr7 (549-590)||(4925910-4925951)
chr7 (531-584)||(28020070-28020123)
chr7 (668-713)||(34733455-34733500)
chr7 (660-713)||(40298984-40299037)
[»] chr2 (27 HSPs)
chr2 (642-731)||(4840663-4840751)
chr2 (660-731)||(24775317-24775387)
chr2 (642-731)||(40410571-40410659)
chr2 (660-713)||(44228611-44228664)
chr2 (660-731)||(7743529-7743599)
chr2 (535-590)||(32457287-32457342)
chr2 (660-731)||(37106992-37107062)
chr2 (531-590)||(45571049-45571108)
chr2 (531-590)||(45574716-45574775)
chr2 (531-590)||(45578383-45578442)
chr2 (531-590)||(45582050-45582109)
chr2 (531-590)||(45585717-45585776)
chr2 (531-590)||(45589384-45589443)
chr2 (531-590)||(45593051-45593110)
chr2 (531-590)||(45596718-45596777)
chr2 (531-590)||(45600385-45600444)
chr2 (531-590)||(45604052-45604111)
chr2 (531-590)||(45607719-45607778)
chr2 (531-590)||(45611386-45611445)
chr2 (531-590)||(45615053-45615112)
chr2 (538-584)||(7943516-7943562)
chr2 (661-715)||(11171886-11171940)
chr2 (660-716)||(40987236-40987292)
chr2 (538-581)||(9152456-9152499)
chr2 (678-716)||(6592098-6592136)
chr2 (553-590)||(28249025-28249062)
chr2 (544-581)||(38449021-38449058)
[»] chr3 (26 HSPs)
chr3 (660-731)||(647546-647616)
chr3 (642-713)||(34060011-34060082)
chr3 (531-590)||(49885398-49885457)
chr3 (655-713)||(5244730-5244788)
chr3 (664-709)||(2567970-2568015)
chr3 (660-713)||(38457606-38457659)
chr3 (666-731)||(40049003-40049067)
chr3 (660-729)||(44648364-44648432)
chr3 (647-731)||(26965449-26965532)
chr3 (660-713)||(31290928-31290981)
chr3 (660-713)||(43580625-43580678)
chr3 (642-731)||(43600126-43600215)
chr3 (661-717)||(2662447-2662503)
chr3 (664-731)||(1340887-1340953)
chr3 (666-713)||(4392041-4392088)
chr3 (642-713)||(25061839-25061910)
chr3 (660-715)||(27483147-27483202)
chr3 (531-590)||(29457909-29457968)
chr3 (678-713)||(43736842-43736877)
chr3 (535-590)||(54537462-54537517)
chr3 (645-731)||(790201-790286)
chr3 (549-590)||(5177853-5177894)
chr3 (664-713)||(37225553-37225602)
chr3 (660-713)||(42857045-42857098)
chr3 (660-713)||(46362964-46363017)
chr3 (666-731)||(53716132-53716196)
[»] scaffold0580 (2 HSPs)
scaffold0580 (642-713)||(1719-1790)
scaffold0580 (642-713)||(9458-9529)
[»] scaffold0189 (1 HSPs)
scaffold0189 (660-713)||(13022-13075)
[»] scaffold0119 (1 HSPs)
scaffold0119 (642-731)||(1671-1759)
[»] scaffold0072 (1 HSPs)
scaffold0072 (664-713)||(12040-12089)
[»] scaffold0238 (1 HSPs)
scaffold0238 (660-731)||(15994-16064)
[»] scaffold0194 (1 HSPs)
scaffold0194 (642-713)||(8294-8365)


Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 169 - 508
Target Start/End: Complemental strand, 29101111 - 29100772
Alignment:
Q  169 caggttcattgcaggtggaggacttggccgcacacgtacttgcagtttgtcgctaatcaagtcacagttcgtgggtgcaatcacggaaactatatgtgca 268  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||| ||||||||||||||||||||||||||    
T  29101111 caggtgcattgcaggtggaggacttggccgcacacgtacttgcagtttgtccctaatcaagtcggagttcgtgtgtgcaatcacggaaactatatgtgca 29101012  T
Q  269 tgaatgctatgcatgcgagctcaagaaataacaaatcatctcggaataatacagctgtataatgaaggtgcagggcacggaacgagagtataagatccag 368  Q
    |||||  |||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  29101011 tgaatattatgcatgcgagctcatgaaataaaaaatcatctcggaataacacagctgtataatgaaggtgcagggcacggaaccagagtatacgatccag 29100912  T
Q  369 aatgggtaaaaccgaactaatattcaatgcatttccatattcaacaaatcatcaaacataagcttatgcaacccctggaacactctcaaccagcatgata 468  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29100911 aatgggtaaaaccgaactaatattcaatacatttccatattcaacaaatcatcaaacataagcttatgcaaccccttgaacactctcaaccagcatgata 29100812  T
Q  469 tattaatatctgtcctccttccatattaagaaagaatcta 508  Q
    |||||||||||| |||||| ||||| |||||||| |||||    
T  29100811 tattaatatctggcctcctaccatactaagaaaggatcta 29100772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 169 - 508
Target Start/End: Complemental strand, 29063175 - 29062836
Alignment:
Q  169 caggttcattgcaggtggaggacttggccgcacacgtacttgcagtttgtcgctaatcaagtcacagttcgtgggtgcaatcacggaaactatatgtgca 268  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||| ||||||||||||||||||||||||||    
T  29063175 caggtgcattgcaggtggaggacttggccgcacacgtacttgcagtttgtccctaatcaagtcggagttcgtgtgtgcaatcacggaaactatatgtgca 29063076  T
Q  269 tgaatgctatgcatgcgagctcaagaaataacaaatcatctcggaataatacagctgtataatgaaggtgcagggcacggaacgagagtataagatccag 368  Q
    |||||  |||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||| |||||||    
T  29063075 tgaatattatgcatgcgagctcatgaaataaaaaatcatctcggaataacacagctgtataatgaaggtgcagggcacgaaaccagagtatacgatccag 29062976  T
Q  369 aatgggtaaaaccgaactaatattcaatgcatttccatattcaacaaatcatcaaacataagcttatgcaacccctggaacactctcaaccagcatgata 468  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29062975 aatgggtaaaaccgaactaatattcaatacatttccatattcaacaaatcatcaaacataagcttatgcaaccccttgaacactctcaaccagcatgata 29062876  T
Q  469 tattaatatctgtcctccttccatattaagaaagaatcta 508  Q
    ||||||||| || |||||| ||||| |||||||| |||||    
T  29062875 tattaatatatggcctcctaccatactaagaaaggatcta 29062836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 169 - 508
Target Start/End: Complemental strand, 29118029 - 29117690
Alignment:
Q  169 caggttcattgcaggtggaggacttggccgcacacgtacttgcagtttgtcgctaatcaagtcacagttcgtgggtgcaatcacggaaactatatgtgca 268  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||| ||||||||||||||||||||||||||    
T  29118029 caggtgcattgcaggtggaggacttggccgcacacgtacttgcagtttgtccctaatcaagtcggagttcgtgtgtgcaatcacggaaactatatgtgca 29117930  T
Q  269 tgaatgctatgcatgcgagctcaagaaataacaaatcatctcggaataatacagctgtataatgaaggtgcagggcacggaacgagagtataagatccag 368  Q
    |||||  |||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||| |||||||    
T  29117929 tgaatattatgcatgcgagctcatgaaataaaaaatcatctcggaataacacagctgtataatgaaggtgcagggcacgaaaccagagtatacgatccag 29117830  T
Q  369 aatgggtaaaaccgaactaatattcaatgcatttccatattcaacaaatcatcaaacataagcttatgcaacccctggaacactctcaaccagcatgata 468  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29117829 aatgggtaaaaccgaactaatattcaatacatttccatattcaacaaatcatcaaacataagcttatgcaaccccttgaacactctcaaccagcatgata 29117730  T
Q  469 tattaatatctgtcctccttccatattaagaaagaatcta 508  Q
    ||||||||| || |||||| ||||| |||||||| |||||    
T  29117729 tattaatatgtggcctcctaccatactaagaaaggatcta 29117690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 169 - 299
Target Start/End: Complemental strand, 29120750 - 29120620
Alignment:
Q  169 caggttcattgcaggtggaggacttggccgcacacgtacttgcagtttgtcgctaatcaagtcacagttcgtgggtgcaatcacggaaactatatgtgca 268  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||| ||||||||||||||||||||||||||    
T  29120750 caggtgcattgcaggtggaggacttggccgcacacgtacttgcagtttgtccctaatcaagtcggagttcgtgtgtgcaatcacggaaactatatgtgca 29120651  T
Q  269 tgaatgctatgcatgcgagctcaagaaataa 299  Q
    |||||  |||||||||||||||| |||||||    
T  29120650 tgaatattatgcatgcgagctcatgaaataa 29120620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 645 - 731
Target Start/End: Complemental strand, 29915756 - 29915670
Alignment:
Q  645 gttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    |||||||| ||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||  ||||||||||||    
T  29915756 gttttaggtgttggcacacatattaagaaattgaatgaaataataattagaaataacacttttactaaactgccatttactttataa 29915670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 642 - 731
Target Start/End: Original strand, 23936519 - 23936608
Alignment:
Q  642 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||||||||| ||||| ||||| |||||||||| |||||||||||| ||||||||||||| ||||||| |||||| |||||||||||||    
T  23936519 gtcgttttaggtgttgggacacatattaagaaatggaatgaaataatcattagatataacatttttactgaattgccctttactttataa 23936608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 29063514 - 29063457
Alignment:
Q  56 aactttgggactgattgcttgttcaaattacaatacagtaacaaatactttcctcttt 113  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29063514 aactttgggactgattgcttgttcaaattacaatacagtaagaaatactttcctcttt 29063457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 29101450 - 29101397
Alignment:
Q  56 aactttgggactgattgcttgttcaaattacaatacagtaacaaatactttcct 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29101450 aactttgggactgattgcttgttcaaattacaatacagtaacaaatactttcct 29101397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 29118368 - 29118311
Alignment:
Q  56 aactttgggactgattgcttgttcaaattacaatacagtaacaaatactttcctcttt 113  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29118368 aactttgggactgattgcttgttcaaattacaatacagtaagaaatactttcctcttt 29118311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 29121089 - 29121036
Alignment:
Q  56 aactttgggactgattgcttgttcaaattacaatacagtaacaaatactttcct 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29121089 aactttgggactgattgcttgttcaaattacaatacagtaacaaatactttcct 29121036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 642 - 731
Target Start/End: Original strand, 34439344 - 34439433
Alignment:
Q  642 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||||||||| ||||  ||| | ||||||||||  ||||||||||| ||||||||||||| ||||| |||||||| ||||| |||||||    
T  34439344 gtcgttttaggtgttgacacataaattaagaaatgaaatgaaataatcattagatataacatttttattaaattgccctttattttataa 34439433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 660 - 712
Target Start/End: Complemental strand, 29927406 - 29927354
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaa 712  Q
    ||||||||||| |||| |||||||||||| |||||| ||||||||||||||||    
T  29927406 acacagattaaaaaatagaatgaaataatcattagacataacacttttactaa 29927354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 642 - 713
Target Start/End: Complemental strand, 32258929 - 32258858
Alignment:
Q  642 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    |||| ||||||| |||  |||||||||||||||| || ||||||||| ||| |||||||| |||||||||||    
T  32258929 gtcgctttaggctttgacacacagattaagaaatcgattgaaataatcattggatataacgcttttactaaa 32258858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 668 - 713
Target Start/End: Original strand, 19689809 - 19689854
Alignment:
Q  668 taagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||||    
T  19689809 taagaaatggaatgaaataattattagatataacaattttactaaa 19689854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 642 - 731
Target Start/End: Original strand, 26669034 - 26669122
Alignment:
Q  642 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    |||| ||||||| || | ||| ||||||||||||  ||||||||||| ||| ||||||||  |||||||||||||| | |||||||||||    
T  26669034 gtcgctttaggctttagcacaaagattaagaaatataatgaaataattattggatataacgtttttactaaattgc-ccttactttataa 26669122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 574
Target Start/End: Complemental strand, 2810157 - 2810114
Alignment:
Q  531 ctatttctagactagattcatcaattatttaatgaatctaaaaa 574  Q
    ||||||||||||||| | ||||||||||| ||||||||||||||    
T  2810157 ctatttctagactaggtacatcaattattgaatgaatctaaaaa 2810114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 678 - 713
Target Start/End: Complemental strand, 30627262 - 30627227
Alignment:
Q  678 aatgaaataataattagatataacacttttactaaa 713  Q
    ||||||||||| ||||||||||||||||||||||||    
T  30627262 aatgaaataatcattagatataacacttttactaaa 30627227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 713
Target Start/End: Complemental strand, 8052533 - 8052480
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    ||||| ||||||||||  ||||||||||| |||||| |||||||||||| ||||    
T  8052533 acacaaattaagaaatgaaatgaaataatcattagacataacacttttattaaa 8052480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 678 - 731
Target Start/End: Original strand, 12828653 - 12828705
Alignment:
Q  678 aatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||||||||| |||||| ||||||||||||||||| ||| | |||||||||||    
T  12828653 aatgaaataatcattagacataacacttttactaaactgc-ccttactttataa 12828705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 4e-31; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 642 - 731
Target Start/End: Original strand, 1430472 - 1430561
Alignment:
Q  642 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  1430472 gtcgttttaggtgttggcacacagattaagaaatttaatgaaataataattagatataacacttttactaaactgcactttactttataa 1430561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 645 - 731
Target Start/End: Complemental strand, 1429080 - 1428994
Alignment:
Q  645 gttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    |||||||| ||||  ||| | ||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||    
T  1429080 gttttaggtgttgacacatatattaagaaattgaatgaaataattattagatataacacttttactaaactgccctttactttataa 1428994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 660 - 713
Target Start/End: Original strand, 84472 - 84525
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    |||||||||||| |||||||||||||||| |||||| |||||||||||||||||    
T  84472 acacagattaaggaattgaatgaaataatcattagacataacacttttactaaa 84525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 642 - 731
Target Start/End: Original strand, 5317513 - 5317602
Alignment:
Q  642 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||||||||||  | ||||| |||||||| |||  ||||||||||| |||||| ||||||||||||||||||||| | ||| |||||||    
T  5317513 gtcgttttaggcaatagtacatagattaaggaatgaaatgaaataatcattagacataacacttttactaaattgccccttattttataa 5317602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 660 - 713
Target Start/End: Complemental strand, 6332365 - 6332312
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    ||||| ||||||||||||||||||||||| |||||| |||||||||||||||||    
T  6332365 acacaaattaagaaattgaatgaaataatcattagacataacacttttactaaa 6332312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 666 - 715
Target Start/End: Original strand, 43105562 - 43105611
Alignment:
Q  666 attaagaaattgaatgaaataataattagatataacacttttactaaatt 715  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  43105562 attaagaaattgaatgaaataatcattagacataacacttttactaaatt 43105611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 660 - 731
Target Start/End: Complemental strand, 30006328 - 30006258
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    |||||||||||  |||||||||||||||| |||||| |||||||| |||||||||||| | |||||||||||    
T  30006328 acacagattaatgaattgaatgaaataatcattagacataacactattactaaattgctc-ttactttataa 30006258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 660 - 731
Target Start/End: Original strand, 40060860 - 40060930
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||| ||||||||||  ||||||||||| |||||| ||||||||||||||||||||| | |||||||||||    
T  40060860 acacatattaagaaatgaaatgaaataatgattagacataacacttttactaaattgc-ccttactttataa 40060930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 660 - 711
Target Start/End: Complemental strand, 43929882 - 43929831
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttacta 711  Q
    ||||| ||||||||||||||||||||||| |||||| |||||||||||||||    
T  43929882 acacaaattaagaaattgaatgaaataatcattagacataacacttttacta 43929831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 660 - 732
Target Start/End: Original strand, 50349811 - 50349882
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataat 732  Q
    ||||| |||||| ||| |||||||||||| |||||| ||||||||||||||||| ||| | ||||||||||||    
T  50349811 acacaaattaaggaatggaatgaaataatcattagacataacacttttactaaactgc-ccttactttataat 50349882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 377 - 435
Target Start/End: Complemental strand, 4259860 - 4259802
Alignment:
Q  377 aaaccgaactaatattcaatgcatttccatattcaacaaatcatcaaacataagcttat 435  Q
    ||||| |||||||||||||||||||  |||||||||| |||| || |||||||||||||    
T  4259860 aaaccaaactaatattcaatgcattctcatattcaaccaatcttccaacataagcttat 4259802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 377 - 435
Target Start/End: Complemental strand, 4263482 - 4263424
Alignment:
Q  377 aaaccgaactaatattcaatgcatttccatattcaacaaatcatcaaacataagcttat 435  Q
    ||||| |||||||||||||||||||  |||||||||| |||| || |||||||||||||    
T  4263482 aaaccaaactaatattcaatgcattctcatattcaaccaatcttccaacataagcttat 4263424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 665 - 731
Target Start/End: Original strand, 24040983 - 24041048
Alignment:
Q  665 gattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||||| ||| |||||||||||| |||||| ||||||||||||||||| ||| | |||||||||||    
T  24040983 gattaaggaatggaatgaaataatcattagacataacacttttactaaactgc-ccttactttataa 24041048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 713
Target Start/End: Original strand, 10690909 - 10690962
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    ||||| ||||||||||  ||||||||||| ||||||||||||| ||||||||||    
T  10690909 acacatattaagaaatgaaatgaaataatcattagatataacatttttactaaa 10690962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 662 - 731
Target Start/End: Complemental strand, 52403672 - 52403604
Alignment:
Q  662 acagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    |||||||||||||| |||||||||||| ||| ||||||||||| ||| |||| ||| | |||||||||||    
T  52403672 acagattaagaaatggaatgaaataatcattggatataacactgttattaaactgc-ccttactttataa 52403604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 678 - 717
Target Start/End: Original strand, 6377258 - 6377297
Alignment:
Q  678 aatgaaataataattagatataacacttttactaaattgc 717  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  6377258 aatgaaataatcattagacataacacttttactaaattgc 6377297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 713
Target Start/End: Complemental strand, 11650254 - 11650203
Alignment:
Q  662 acagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    ||||||||||||||||||||||||||  ||||||||||  | ||||||||||    
T  11650254 acagattaagaaattgaatgaaataaccattagatatagtatttttactaaa 11650203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 535 - 590
Target Start/End: Original strand, 38040350 - 38040405
Alignment:
Q  535 ttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    |||||||| |||| ||||||||| | ||||||||||||||||||| |||| |||||    
T  38040350 ttctagacaagatacatcaattaatcaatgaatctaaaaagtcaaatttttcttat 38040405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 535 - 590
Target Start/End: Complemental strand, 49944907 - 49944852
Alignment:
Q  535 ttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    |||||||| |||| ||||||||||| |||||||||||||||| || |||| |||||    
T  49944907 ttctagacaagatacatcaattattcaatgaatctaaaaagttaaatttttcttat 49944852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 647 - 713
Target Start/End: Original strand, 50158259 - 50158325
Alignment:
Q  647 tttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    ||||||| |||  ||| ||||||||||||  |||| |||||| ||| ||||||||||||||||||||    
T  50158259 tttaggctttgacacatagattaagaaatataatgcaataatcattggatataacacttttactaaa 50158325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 549 - 590
Target Start/End: Original strand, 1811279 - 1811320
Alignment:
Q  549 catcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    |||||||||||||||||||||||||| | ||||||| |||||    
T  1811279 catcaattatttaatgaatctaaaaaatgaatttttgcttat 1811320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 576
Target Start/End: Complemental strand, 34662760 - 34662715
Alignment:
Q  531 ctatttctagactagattcatcaattatttaatgaatctaaaaagt 576  Q
    |||||||||| |||| | ||||||||||| ||||||||||||||||    
T  34662760 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagt 34662715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 713
Target Start/End: Original strand, 48259817 - 48259870
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    |||||||||||| ||| ||||||||||||  ||||| |||||||||||| ||||    
T  48259817 acacagattaaggaatagaatgaaataatcgttagacataacacttttattaaa 48259870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 642 - 731
Target Start/End: Complemental strand, 15400389 - 15400300
Alignment:
Q  642 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| | | |||||||||||||    
T  15400389 gtcgttttaggtgttggcacacagattaaaaaattgaatgaaataattattagatataacacttttactaaaattccctttactttataa 15400300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 642 - 731
Target Start/End: Original strand, 14979987 - 14980075
Alignment:
Q  642 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    |||| ||||||| |||| |||||||||||||||| |||||||||||| ||| |||||||||||||||| ||| ||| | |||||||||||    
T  14979987 gtcgctttaggctttggcacacagattaagaaatggaatgaaataatcattggatataacacttttaccaaactgc-ccttactttataa 14980075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 642 - 731
Target Start/End: Original strand, 4967427 - 4967515
Alignment:
Q  642 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    |||| ||||||| |||  |||||||||||||||| |||||||||||| ||| |||||||| ||||||||||| ||| | |||||||||||    
T  4967427 gtcgctttaggctttgacacacagattaagaaatggaatgaaataatcattggatataacgcttttactaaactgc-ccttactttataa 4967515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 642 - 731
Target Start/End: Original strand, 31557276 - 31557365
Alignment:
Q  642 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||||||||| |||| |||||| |||||||||| |||||||||||| |||| |||||| ||||||| ||||   | |||||||||||||    
T  31557276 gtcgttttaggtgttgatacacatattaagaaatagaatgaaataatcattaaatataatacttttagtaaacaaccctttactttataa 31557365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 660 - 731
Target Start/End: Original strand, 12167564 - 12167634
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||| ||||||||||||||||||||||| |||||| | ||||||||||||||| ||| | |||||||||||    
T  12167564 acacaaattaagaaattgaatgaaataatcattagacaaaacacttttactaaactgc-ccttactttataa 12167634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 531 - 590
Target Start/End: Original strand, 1138287 - 1138346
Alignment:
Q  531 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    |||||||||| |||||| ||| ||||||||||||||| |||||| ||||||||| |||||    
T  1138287 ctatttctagtctagatacattaattatttaatgaatttaaaaaatcaattttttcttat 1138346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 531 - 590
Target Start/End: Complemental strand, 27488425 - 27488366
Alignment:
Q  531 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    |||||||||| |||||| ||||||||||| |||||||||||||| | ||||||| |||||    
T  27488425 ctatttctaggctagatacatcaattattgaatgaatctaaaaaattaattttttcttat 27488366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 713
Target Start/End: Original strand, 166603 - 166656
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    |||||||||||| |||  ||||||||||| |||||| |||||||||||||||||    
T  166603 acacagattaaggaatgaaatgaaataatcattagaaataacacttttactaaa 166656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 713
Target Start/End: Complemental strand, 36660624 - 36660571
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    |||||||||||| |||  ||||||||||| |||||| |||||||||||||||||    
T  36660624 acacagattaaggaatgaaatgaaataatcattagacataacacttttactaaa 36660571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 717
Target Start/End: Complemental strand, 36783554 - 36783497
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgc 717  Q
    ||||||||||||| ||  ||||||||||| |||||| |||||| ||||||||||||||    
T  36783554 acacagattaagagatgaaatgaaataatcattagacataacatttttactaaattgc 36783497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 713
Target Start/End: Complemental strand, 4371549 - 4371496
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    ||||| |||||| ||| |||||||||||| |||||| ||| |||||||||||||    
T  4371549 acacaaattaaggaatggaatgaaataatcattagacatagcacttttactaaa 4371496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 713
Target Start/End: Original strand, 4751484 - 4751537
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    ||||| |||||| |||  ||||||||||| |||||| |||||||||||||||||    
T  4751484 acacatattaaggaatgaaatgaaataatcattagacataacacttttactaaa 4751537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 664 - 709
Target Start/End: Original strand, 24436498 - 24436543
Alignment:
Q  664 agattaagaaattgaatgaaataataattagatataacacttttac 709  Q
    |||||||| |||  ||||||||||| ||||||||||||||||||||    
T  24436498 agattaaggaataaaatgaaataatcattagatataacacttttac 24436543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 584
Target Start/End: Complemental strand, 26327614 - 26327561
Alignment:
Q  531 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaattttt 584  Q
    |||||| |||| ||| | ||||||||||| |||||||||||||||| |||||||    
T  26327614 ctatttttagattaggtacatcaattattgaatgaatctaaaaagttaattttt 26327561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 672 - 717
Target Start/End: Complemental strand, 33741813 - 33741768
Alignment:
Q  672 aaattgaatgaaataataattagatataacacttttactaaattgc 717  Q
    |||| |||||||||||| |||||||||| || ||||||||||||||    
T  33741813 aaatggaatgaaataatcattagatataccatttttactaaattgc 33741768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 549 - 582
Target Start/End: Original strand, 34297262 - 34297295
Alignment:
Q  549 catcaattatttaatgaatctaaaaagtcaattt 582  Q
    ||||||||| ||||||||||||||||||||||||    
T  34297262 catcaattacttaatgaatctaaaaagtcaattt 34297295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 590
Target Start/End: Complemental strand, 38394484 - 38394447
Alignment:
Q  553 aattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  38394484 aattattcaatgaatctaaaaagtcaattttttcttat 38394447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 5e-24; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 642 - 731
Target Start/End: Original strand, 27109756 - 27109845
Alignment:
Q  642 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||||||||| ||||| ||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||   ||||||||||||    
T  27109756 gtcgttttaggtgttggcacacatattaagaaatagaatgaaataatcattagatataacacttttactaaattgtcttttactttataa 27109845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 658 - 731
Target Start/End: Complemental strand, 6839407 - 6839335
Alignment:
Q  658 gtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||||||||||| |||| |||||||||||| |||||| ||||||||||||||||||||| |||||||||||||    
T  6839407 gtacacagattaaaaaatggaatgaaataatcattagacataacacttttactaaattgc-ctttactttataa 6839335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 531 - 584
Target Start/End: Original strand, 13831430 - 13831483
Alignment:
Q  531 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaattttt 584  Q
    |||||| ||||||| || ||||||||||||||||||||||||||||||||||||    
T  13831430 ctatttttagactaaatacatcaattatttaatgaatctaaaaagtcaattttt 13831483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 662 - 731
Target Start/End: Complemental strand, 32737961 - 32737893
Alignment:
Q  662 acagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||  |||| ||| |||||||||||||    
T  32737961 acagattaagaaattgaatgaaata-tcattagatataacacttttgttaaactgccctttactttataa 32737893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 662 - 713
Target Start/End: Complemental strand, 24732144 - 24732093
Alignment:
Q  662 acagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    ||||||||||||||||||||||||| | ||| ||||||||||||||||||||    
T  24732144 acagattaagaaattgaatgaaatagtcattggatataacacttttactaaa 24732093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 531 - 584
Target Start/End: Original strand, 24915239 - 24915292
Alignment:
Q  531 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaattttt 584  Q
    |||||||||  |||||| |||||||||||||||||||||||||||| |||||||    
T  24915239 ctatttctaagctagatacatcaattatttaatgaatctaaaaagttaattttt 24915292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 660 - 713
Target Start/End: Original strand, 38329009 - 38329062
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    |||||||||||| ||| |||||||||||| |||||| |||||||||||||||||    
T  38329009 acacagattaaggaatggaatgaaataatcattagacataacacttttactaaa 38329062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 666 - 713
Target Start/End: Complemental strand, 2812968 - 2812921
Alignment:
Q  666 attaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    |||||| |||||||||||||||| |||||| |||||||||||||||||    
T  2812968 attaagtaattgaatgaaataatcattagacataacacttttactaaa 2812921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 655 - 713
Target Start/End: Original strand, 32061408 - 32061466
Alignment:
Q  655 ttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    |||| ||||| |||||||||||||| |||||||| || ||| |||||||||||||||||    
T  32061408 ttggcacacatattaagaaattgaacgaaataatcatcagacataacacttttactaaa 32061466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 642 - 731
Target Start/End: Complemental strand, 2067916 - 2067828
Alignment:
Q  642 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    |||| ||||||| |||  ||| |||||||||||| |||||||||||| ||| |||||||| |||||| |||| ||| | |||||||||||    
T  2067916 gtcgctttaggctttgacacatagattaagaaatggaatgaaataatcatttgatataacgcttttattaaactgc-ccttactttataa 2067828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 713
Target Start/End: Complemental strand, 9022594 - 9022541
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    ||||||||||| |||| ||||||| |||| |||||| |||||||||||||||||    
T  9022594 acacagattaaaaaatggaatgaattaatcattagacataacacttttactaaa 9022541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 646 - 715
Target Start/End: Original strand, 11335979 - 11336048
Alignment:
Q  646 ttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaatt 715  Q
    |||||||| |||  ||||||||||||||||  |||||| |||  ||| ||||||||||||||||||||||    
T  11335979 ttttaggctttgacacacagattaagaaatgtaatgaagtaaccattcgatataacacttttactaaatt 11336048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 655 - 731
Target Start/End: Complemental strand, 7612700 - 7612626
Alignment:
Q  655 ttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    |||| |||||||||||||||| |||||||||||| ||| |||||||| | ||||||||| ||| | |||||||||||    
T  7612700 ttggcacacagattaagaaatagaatgaaataatcattggatataacgc-tttactaaactgc-ccttactttataa 7612626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 584
Target Start/End: Complemental strand, 3236398 - 3236355
Alignment:
Q  541 actagattcatcaattatttaatgaatctaaaaagtcaattttt 584  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||||    
T  3236398 actagatacatcaattattcaatgaatttaaaaagtcaattttt 3236355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 717
Target Start/End: Complemental strand, 36915561 - 36915506
Alignment:
Q  662 acagattaagaaattgaatgaaataataattagatataacacttttactaaattgc 717  Q
    |||||||||| ||| |||||||||||| |||||| |||| | ||||||||||||||    
T  36915561 acagattaaggaatggaatgaaataatcattagacataatatttttactaaattgc 36915506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 713
Target Start/End: Original strand, 3095467 - 3095520
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    ||||| ||||| |||| |||||||||||| |||| |||| ||||||||||||||    
T  3095467 acacaaattaaaaaatagaatgaaataatcattaaatatgacacttttactaaa 3095520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 549 - 590
Target Start/End: Original strand, 10184639 - 10184680
Alignment:
Q  549 catcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    ||||||||||| ||||||||||||||||| |||||| |||||    
T  10184639 catcaattattcaatgaatctaaaaagtcgattttttcttat 10184680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 590
Target Start/End: Complemental strand, 10839819 - 10839782
Alignment:
Q  553 aattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  10839819 aattattcaatgaatctaaaaagtcaattttttcttat 10839782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 678 - 731
Target Start/End: Complemental strand, 22601315 - 22601263
Alignment:
Q  678 aatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||||||||| |||||| ||||| ||||||||||||||  |||||||||||||    
T  22601315 aatgaaataatcattagacataactcttttactaaattg-tctttactttataa 22601263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 713
Target Start/End: Original strand, 32326679 - 32326732
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    |||||||||||| |||  ||||||||||| ||||||  ||||||||||||||||    
T  32326679 acacagattaaggaatgaaatgaaataatcattagacgtaacacttttactaaa 32326732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 535 - 584
Target Start/End: Original strand, 42123040 - 42123089
Alignment:
Q  535 ttctagactagattcatcaattatttaatgaatctaaaaagtcaattttt 584  Q
    |||||||| |||| ||| ||||| | ||||||||||||||||||||||||    
T  42123040 ttctagacaagatacattaattactcaatgaatctaaaaagtcaattttt 42123089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 713
Target Start/End: Original strand, 45187250 - 45187303
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    |||||||||||| |||  ||||||||||| |||||| || ||||||||||||||    
T  45187250 acacagattaaggaatataatgaaataatcattagacatgacacttttactaaa 45187303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 658 - 713
Target Start/End: Original strand, 32140941 - 32140996
Alignment:
Q  658 gtacacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  32140941 gtacacagattaagaaattgaatgaaataatcattagacataacacttttactaaa 32140996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 658 - 715
Target Start/End: Original strand, 51737277 - 51737334
Alignment:
Q  658 gtacacagattaagaaattgaatgaaataataattagatataacacttttactaaatt 715  Q
    ||||||| |||||| ||| ||||||||||||||||||| |||||||||||||||||||    
T  51737277 gtacacaaattaaggaatagaatgaaataataattagacataacacttttactaaatt 51737334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 642 - 731
Target Start/End: Original strand, 56422938 - 56423026
Alignment:
Q  642 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    |||| ||||||| |||  |||||||||||||||| |||||||||||| ||| |||||||| ||||||||||| ||  |||||||||||||    
T  56422938 gtcgctttaggctttgacacacagattaagaaatcgaatgaaataatcattggatataacgcttttactaaactg-tctttactttataa 56423026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 655 - 731
Target Start/End: Original strand, 43421076 - 43421151
Alignment:
Q  655 ttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    |||| ||||| |||||||||| |||||||||||| ||| ||||||| |||||||||||||||| | |||||||||||    
T  43421076 ttggcacacaaattaagaaatggaatgaaataatcattggatataatacttttactaaattgctc-ttactttataa 43421151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 644 - 731
Target Start/End: Complemental strand, 52732802 - 52732716
Alignment:
Q  644 cgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    |||||||||| |||  ||| ||||||| |||| |||||||||||| ||| |||||||||||||||||||| ||| | |||||||||||    
T  52732802 cgttttaggctttgacacatagattaaaaaatggaatgaaataatcattggatataacacttttactaaactgc-ccttactttataa 52732716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 663 - 731
Target Start/End: Complemental strand, 34360197 - 34360130
Alignment:
Q  663 cagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||||||| |||  ||||||||||| |||||||||||||||||||||||| ||| | |||||||||||    
T  34360197 cagattaaggaatgaaatgaaataatcattagatataacacttttactaaactgc-ccttactttataa 34360130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 531 - 590
Target Start/End: Original strand, 55190736 - 55190795
Alignment:
Q  531 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    |||||||||| |||||| ||||||||||| ||||||| |||||| ||||||||| |||||    
T  55190736 ctatttctaggctagatacatcaattattgaatgaatataaaaaatcaattttttcttat 55190795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 655 - 716
Target Start/End: Complemental strand, 3093548 - 3093487
Alignment:
Q  655 ttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattg 716  Q
    |||| ||| ||||||||||||||||| ||||||| |||||| |||||||||| | |||||||    
T  3093548 ttggcacatagattaagaaattgaataaaataatcattagacataacactttcattaaattg 3093487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 713
Target Start/End: Complemental strand, 29840250 - 29840197
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    ||||| |||||| ||| |||||||||||| |||||| |||||||||||||||||    
T  29840250 acacaaattaaggaatggaatgaaataatcattagacataacacttttactaaa 29840197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 642 - 731
Target Start/End: Complemental strand, 34096229 - 34096141
Alignment:
Q  642 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||||||||||  | | ||||| ||||| ||||  ||||||||||| ||||||  |||||||||||||||||||| | |||||||||||    
T  34096229 gtcgttttaggcaattgcacacaaattaaaaaatgaaatgaaataatcattagacttaacacttttactaaattgc-ccttactttataa 34096141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 713
Target Start/End: Original strand, 36805407 - 36805460
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    |||||||||||| |||  ||||||||||| |||||| |||||||||||||||||    
T  36805407 acacagattaaggaatgaaatgaaataatcattagacataacacttttactaaa 36805460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 642 - 731
Target Start/End: Complemental strand, 44855457 - 44855369
Alignment:
Q  642 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    |||| |||| || |||| ||||| |||||||||| |||||||||||| |||  ||||||| ||||||||||| ||| | |||||||||||    
T  44855457 gtcgctttacgctttggcacacaaattaagaaatagaatgaaataatcattgaatataacgcttttactaaactgc-ccttactttataa 44855369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 666 - 731
Target Start/End: Complemental strand, 51930765 - 51930701
Alignment:
Q  666 attaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    |||| ||||| |||||||||||||||| |||||||| ||||||||||| ||| | |||||||||||    
T  51930765 attatgaaatggaatgaaataataattggatataacgcttttactaaactgc-ccttactttataa 51930701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 550 - 590
Target Start/End: Complemental strand, 16412293 - 16412253
Alignment:
Q  550 atcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  16412293 atcaattattcaatgaatctaaaaagtcaattttttcttat 16412253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 664 - 712
Target Start/End: Original strand, 45520419 - 45520467
Alignment:
Q  664 agattaagaaattgaatgaaataataattagatataacacttttactaa 712  Q
    |||||||||||| |||| ||||||| |||||| ||||||||||||||||    
T  45520419 agattaagaaatggaataaaataatcattagacataacacttttactaa 45520467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 549 - 584
Target Start/End: Original strand, 10306456 - 10306491
Alignment:
Q  549 catcaattatttaatgaatctaaaaagtcaattttt 584  Q
    ||||||||||||||| ||||||||||||||||||||    
T  10306456 catcaattatttaatcaatctaaaaagtcaattttt 10306491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 590
Target Start/End: Original strand, 20459310 - 20459369
Alignment:
Q  531 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| || |||| |||||    
T  20459310 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaactttttcttat 20459369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 642 - 713
Target Start/End: Original strand, 31817138 - 31817209
Alignment:
Q  642 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    |||| ||||||| |||  ||||| |||||||||| |||||||||||| ||| ||||||||  ||||||||||    
T  31817138 gtcgctttaggctttgacacacaaattaagaaatggaatgaaataatcattggatataacgtttttactaaa 31817209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 590
Target Start/End: Complemental strand, 47866114 - 47866055
Alignment:
Q  531 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| || |||| |||||    
T  47866114 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaactttttcttat 47866055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 660 - 731
Target Start/End: Complemental strand, 54512218 - 54512148
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||| ||||||||||  ||||||||||||||| ||||||||  |||||||||| ||| | |||||||||||    
T  54512218 acacatattaagaaatgaaatgaaataataattggatataacgtttttactaaactgctc-ttactttataa 54512148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 660 - 710
Target Start/End: Complemental strand, 30492915 - 30492865
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttact 710  Q
    ||||| |||||| ||| |||||||||||| |||||| ||||||||||||||    
T  30492915 acacaaattaaggaatggaatgaaataatcattagacataacacttttact 30492865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 665 - 731
Target Start/End: Original strand, 39671068 - 39671133
Alignment:
Q  665 gattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||||||||| ||||||||| || |||||| ||||||| ||||||||| | | |||||||||||||    
T  39671068 gattaagaaatggaatgaaattatcattagacataacacatttactaaactac-ctttactttataa 39671133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 642 - 731
Target Start/End: Complemental strand, 50072467 - 50072376
Alignment:
Q  642 gtcgttttaggcgttggtacacagatt---aagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    |||| ||||| | ||||||||||||||   ||||||| |||||||||||| ||| ||||||||  |||||||||| ||| | |||||||||||    
T  50072467 gtcgctttagactttggtacacagatttataagaaatggaatgaaataatcattggatataacgtttttactaaactgc-ccttactttataa 50072376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 678 - 731
Target Start/End: Complemental strand, 37445837 - 37445785
Alignment:
Q  678 aatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||||||||| |||||| ||||||||||||||||| ||| | |||||||||||    
T  37445837 aatgaaataatcattagacataacacttttactaaactgc-ccttactttataa 37445785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 665 - 714
Target Start/End: Original strand, 38761788 - 38761837
Alignment:
Q  665 gattaagaaattgaatgaaataataattagatataacacttttactaaat 714  Q
    ||||||||||| |||| ||||||| | |||| ||||||||||||||||||    
T  38761788 gattaagaaatagaattaaataattaatagacataacacttttactaaat 38761837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 713
Target Start/End: Complemental strand, 42672584 - 42672531
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    ||||| |||||| |||  ||||||||||| |||||| |||||||||||||||||    
T  42672584 acacaaattaaggaatataatgaaataatcattagacataacacttttactaaa 42672531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 664 - 713
Target Start/End: Original strand, 45903377 - 45903426
Alignment:
Q  664 agattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    |||||||||||| |||||||||||| ||| |||||||| |||||| ||||    
T  45903377 agattaagaaatagaatgaaataatcattggatataacgcttttattaaa 45903426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 590
Target Start/End: Original strand, 53225736 - 53225773
Alignment:
Q  553 aattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  53225736 aattattcaatgaatctaaaaagtcaattttttcttat 53225773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 715
Target Start/End: Original strand, 56556236 - 56556288
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaatt 715  Q
    |||||||||||| ||||||||||   ||| |||||| |||||||||||||||||||    
T  56556236 acacagattaaggaattgaatga---aatcattagacataacacttttactaaatt 56556288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 653 - 731
Target Start/End: Complemental strand, 18886851 - 18886774
Alignment:
Q  653 cgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    |||||| ||||||| |||||||| |||||||||||| |||||||||||| ||||||||||| ||| | |||||||||||    
T  18886851 cgttggcacacagactaagaaatggaatgaaataatcattagatataacgcttttactaaactgc-ccttactttataa 18886774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 660 - 731
Target Start/End: Original strand, 34002086 - 34002157
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||||||||||||||  ||||||||||| ||| |||||||||| ||| ||||| ||| |||||||||||||    
T  34002086 acacagattaagaaatgaaatgaaataatcattggatataacacctttgctaaactgcactttactttataa 34002157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 645 - 731
Target Start/End: Original strand, 36447550 - 36447635
Alignment:
Q  645 gttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||||||| |||||| |||||||||||||| |||||||||||| | | |||||||| |||||| |||| ||  |||||||||||||    
T  36447550 gttttaggctttggtatacagattaagaaatggaatgaaataattactggatataactcttttattaaactg-tctttactttataa 36447635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 660 - 731
Target Start/End: Original strand, 3680877 - 3680947
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||||||||| |||| |||||||||||| |||||| |||| |||||||||||| ||| | |||||||||||    
T  3680877 acacagattaaaaaatggaatgaaataatcattagacataaaacttttactaaactgctc-ttactttataa 3680947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 660 - 731
Target Start/End: Complemental strand, 17869436 - 17869366
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    |||||||||||| |||  ||||||||||| |||||| |||||||||||| |||||||  |||||||||||||    
T  17869436 acacagattaaggaatgaaatgaaataatcattagacataacacttttattaaattg-tctttactttataa 17869366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 677 - 716
Target Start/End: Original strand, 30833066 - 30833105
Alignment:
Q  677 gaatgaaataataattagatataacacttttactaaattg 716  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  30833066 gaatgaaataattattagatataacacttttactaaattg 30833105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 535 - 590
Target Start/End: Original strand, 36245450 - 36245505
Alignment:
Q  535 ttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    |||||||| |||| ||||||||| | |||||||||||||||||||||||| |||||    
T  36245450 ttctagacaagatacatcaattactcaatgaatctaaaaagtcaattttttcttat 36245505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 531 - 581
Target Start/End: Complemental strand, 16861590 - 16861540
Alignment:
Q  531 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatt 581  Q
    |||||| ||||||| || ||||||||||| |||||||||||||||||||||    
T  16861590 ctatttttagactatatacatcaattattcaatgaatctaaaaagtcaatt 16861540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 645 - 731
Target Start/End: Original strand, 41905874 - 41905959
Alignment:
Q  645 gttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||||||| |||  ||||||||||||||||  | ||||||||| ||| |||||||| ||||||||||| ||| | |||||||||||    
T  41905874 gttttaggctttgacacacagattaagaaatgaactgaaataatcattggatataacgcttttactaaactgc-ccttactttataa 41905959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 667 - 715
Target Start/End: Original strand, 32873127 - 32873175
Alignment:
Q  667 ttaagaaattgaatgaaataataattagatataacacttttactaaatt 715  Q
    ||||||||||||||| |||||| ||||||||||||| ||||| ||||||    
T  32873127 ttaagaaattgaatgcaataatcattagatataacatttttattaaatt 32873175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 731
Target Start/End: Original strand, 26527356 - 26527422
Alignment:
Q  664 agattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    |||||||||||| ||||| |||||| |||||| ||||||| ||||||||| |||  ||||||||||||    
T  26527356 agattaagaaatggaatgcaataatcattagacataacacctttactaaactgc-ttttactttataa 26527422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 590
Target Start/End: Original strand, 27231903 - 27231962
Alignment:
Q  531 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| || |||| |||||    
T  27231903 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaactttttcttat 27231962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 535 - 590
Target Start/End: Original strand, 28677391 - 28677446
Alignment:
Q  535 ttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    |||||||| |||| ||||||||| | ||| |||||||||||||||||||| |||||    
T  28677391 ttctagacaagatacatcaattactcaataaatctaaaaagtcaattttttcttat 28677446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 535 - 590
Target Start/End: Complemental strand, 45533304 - 45533249
Alignment:
Q  535 ttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    |||||||| |||| ||| |||||  ||||||||||||||||||||||||| |||||    
T  45533304 ttctagacaagatacattaattacataatgaatctaaaaagtcaattttttcttat 45533249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 549 - 590
Target Start/End: Complemental strand, 4925951 - 4925910
Alignment:
Q  549 catcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    ||||||||| ||||||||||||||||||||| |||| |||||    
T  4925951 catcaattacttaatgaatctaaaaagtcaaatttttcttat 4925910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 584
Target Start/End: Original strand, 28020070 - 28020123
Alignment:
Q  531 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaattttt 584  Q
    ||||||||||   |||| || ||||||||||||||||||||||| |||||||||    
T  28020070 ctatttctaggtcagatacaacaattatttaatgaatctaaaaaatcaattttt 28020123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 668 - 713
Target Start/End: Complemental strand, 34733500 - 34733455
Alignment:
Q  668 taagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    ||||||||  ||||||||||| |||||| |||||||||||||||||    
T  34733500 taagaaatgaaatgaaataatcattagacataacacttttactaaa 34733455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 713
Target Start/End: Complemental strand, 40299037 - 40298984
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    ||||| |||||| |||  ||||||||||||||| || |||||||||||||||||    
T  40299037 acacaaattaaggaatgaaatgaaataataattggacataacacttttactaaa 40298984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 642 - 731
Target Start/End: Original strand, 4840663 - 4840751
Alignment:
Q  642 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    |||||||||||| |||| ||||| |||||||||| |||||||||||| ||| ||||||||  |||||||||| ||| | |||||||||||    
T  4840663 gtcgttttaggctttggcacacatattaagaaatggaatgaaataatcattggatataacgtttttactaaactgc-ccttactttataa 4840751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 660 - 731
Target Start/End: Complemental strand, 24775387 - 24775317
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||| ||||||  ||||||||||||||| |||||||||||||||||||||||| ||| | |||||||||||    
T  24775387 acacaaattaaggtattgaatgaaataatcattagatataacacttttactaaaatgctc-ttactttataa 24775317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 642 - 731
Target Start/End: Complemental strand, 40410659 - 40410571
Alignment:
Q  642 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    |||| |||||||||||  |||||||||||||||| |||||| ||||| ||| |||||||| |||||| |||| ||| | |||||||||||    
T  40410659 gtcgctttaggcgttgtcacacagattaagaaatggaatgacataatcattggatataacgcttttattaaactgc-ccttactttataa 40410571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 660 - 713
Target Start/End: Complemental strand, 44228664 - 44228611
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    |||| |||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  44228664 acacggattaaaaaatggaatgaaataatcattagatataacacttttactaaa 44228611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 660 - 731
Target Start/End: Complemental strand, 7743599 - 7743529
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    |||||||||||  |||| ||||||||||| || |||||||||||||||||||| |||| | |||||||||||    
T  7743599 acacagattaaagaattaaatgaaataatcatcagatataacacttttactaagttgc-ccttactttataa 7743529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 535 - 590
Target Start/End: Original strand, 32457287 - 32457342
Alignment:
Q  535 ttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    |||||||| |||| ||||||||| ||||||||||||||||||||| |||| |||||    
T  32457287 ttctagacaagatacatcaattacttaatgaatctaaaaagtcaaatttttcttat 32457342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 660 - 731
Target Start/End: Complemental strand, 37107062 - 37106992
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||| |||||||||| |||||||||||| ||| || | ||||||||||||||||||| | |||||||||||    
T  37107062 acacacattaagaaatggaatgaaataattatttgacacaacacttttactaaattgc-ccttactttataa 37106992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 531 - 590
Target Start/End: Complemental strand, 45571108 - 45571049
Alignment:
Q  531 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| ||||||| |||||    
T  45571108 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaattttttcttat 45571049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 531 - 590
Target Start/End: Complemental strand, 45574775 - 45574716
Alignment:
Q  531 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| ||||||| |||||    
T  45574775 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaattttttcttat 45574716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 531 - 590
Target Start/End: Complemental strand, 45578442 - 45578383
Alignment:
Q  531 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| ||||||| |||||    
T  45578442 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaattttttcttat 45578383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 531 - 590
Target Start/End: Complemental strand, 45582109 - 45582050
Alignment:
Q  531 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| ||||||| |||||    
T  45582109 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaattttttcttat 45582050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 531 - 590
Target Start/End: Complemental strand, 45585776 - 45585717
Alignment:
Q  531 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| ||||||| |||||    
T  45585776 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaattttttcttat 45585717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 531 - 590
Target Start/End: Complemental strand, 45589443 - 45589384
Alignment:
Q  531 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| ||||||| |||||    
T  45589443 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaattttttcttat 45589384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 531 - 590
Target Start/End: Complemental strand, 45593110 - 45593051
Alignment:
Q  531 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| ||||||| |||||    
T  45593110 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaattttttcttat 45593051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 531 - 590
Target Start/End: Complemental strand, 45596777 - 45596718
Alignment:
Q  531 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| ||||||| |||||    
T  45596777 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaattttttcttat 45596718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 531 - 590
Target Start/End: Complemental strand, 45600444 - 45600385
Alignment:
Q  531 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| ||||||| |||||    
T  45600444 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaattttttcttat 45600385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 531 - 590
Target Start/End: Complemental strand, 45604111 - 45604052
Alignment:
Q  531 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| ||||||| |||||    
T  45604111 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaattttttcttat 45604052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 531 - 590
Target Start/End: Complemental strand, 45607778 - 45607719
Alignment:
Q  531 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| ||||||| |||||    
T  45607778 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaattttttcttat 45607719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 531 - 590
Target Start/End: Complemental strand, 45611445 - 45611386
Alignment:
Q  531 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| ||||||| |||||    
T  45611445 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaattttttcttat 45611386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 531 - 590
Target Start/End: Complemental strand, 45615112 - 45615053
Alignment:
Q  531 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    |||||||||| |||| | ||||||||||| |||||||||||||||| ||||||| |||||    
T  45615112 ctatttctaggctaggtacatcaattattgaatgaatctaaaaagttaattttttcttat 45615053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 538 - 584
Target Start/End: Original strand, 7943516 - 7943562
Alignment:
Q  538 tagactagattcatcaattatttaatgaatctaaaaagtcaattttt 584  Q
    ||||| |||| ||||||||||| ||||||||||||||||||||||||    
T  7943516 tagacaagatacatcaattattcaatgaatctaaaaagtcaattttt 7943562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 661 - 715
Target Start/End: Complemental strand, 11171940 - 11171886
Alignment:
Q  661 cacagattaagaaattgaatgaaataataattagatataacacttttactaaatt 715  Q
    |||| ||||||||||||||| ||||||| | |||| |||||||||||||||||||    
T  11171940 cacaaattaagaaattgaataaaataatcaatagacataacacttttactaaatt 11171886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 660 - 716
Target Start/End: Original strand, 40987236 - 40987292
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattg 716  Q
    ||||| |||||| |||  ||||||||||| |||||| ||||||||||||||||||||    
T  40987236 acacatattaaggaatgaaatgaaataatcattagacataacacttttactaaattg 40987292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 538 - 581
Target Start/End: Original strand, 9152456 - 9152499
Alignment:
Q  538 tagactagattcatcaattatttaatgaatctaaaaagtcaatt 581  Q
    |||||||||| ||||||||| | |||||||||||||||||||||    
T  9152456 tagactagatacatcaattactcaatgaatctaaaaagtcaatt 9152499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 678 - 716
Target Start/End: Complemental strand, 6592136 - 6592098
Alignment:
Q  678 aatgaaataataattagatataacacttttactaaattg 716  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  6592136 aatgaaataatcattagacataacacttttactaaattg 6592098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 590
Target Start/End: Original strand, 28249025 - 28249062
Alignment:
Q  553 aattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  28249025 aattatttaatgaatctaaaaagtcaactttttcttat 28249062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 544 - 581
Target Start/End: Original strand, 38449021 - 38449058
Alignment:
Q  544 agattcatcaattatttaatgaatctaaaaagtcaatt 581  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  38449021 agatgcatcaattatttaatgaacctaaaaagtcaatt 38449058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 660 - 731
Target Start/End: Original strand, 647546 - 647616
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||||||||||||||  ||||||||||| ||||||||||||| |||||||||| ||| | |||||||||||    
T  647546 acacagattaagaaatgaaatgaaataatcattagatataacagttttactaaactgc-ccttactttataa 647616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 642 - 713
Target Start/End: Complemental strand, 34060082 - 34060011
Alignment:
Q  642 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    |||| ||||||| |||| |||||||||||||||| |||||||||||||||| |||||||   ||||||||||    
T  34060082 gtcgctttaggctttggcacacagattaagaaatggaatgaaataataattggatataaagtttttactaaa 34060011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 531 - 590
Target Start/End: Complemental strand, 49885457 - 49885398
Alignment:
Q  531 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    ||||||||||||||||| ||||||||||| |||||||||||||| | ||||||| |||||    
T  49885457 ctatttctagactagatacatcaattattgaatgaatctaaaaaattaattttttcttat 49885398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 655 - 713
Target Start/End: Complemental strand, 5244788 - 5244730
Alignment:
Q  655 ttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    |||| ||||| ||||||||||||||||||||||| |||||| |||||||||||| ||||    
T  5244788 ttggcacacatattaagaaattgaatgaaataatcattagacataacacttttattaaa 5244730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 664 - 709
Target Start/End: Original strand, 2567970 - 2568015
Alignment:
Q  664 agattaagaaattgaatgaaataataattagatataacacttttac 709  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||    
T  2567970 agattaaggaattgaatgaaataatcattagatataacacttttac 2568015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 660 - 713
Target Start/End: Complemental strand, 38457659 - 38457606
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    ||||| ||||||||||||||||||||||| |||| | |||||||||||||||||    
T  38457659 acacaaattaagaaattgaatgaaataatcattacacataacacttttactaaa 38457606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 666 - 731
Target Start/End: Complemental strand, 40049067 - 40049003
Alignment:
Q  666 attaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    |||||| ||| |||||||||||| |||||| |||||||||||| |||||||| |||||||||||||    
T  40049067 attaaggaatggaatgaaataatcattagacataacacttttattaaattgc-ctttactttataa 40049003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 660 - 729
Target Start/End: Original strand, 44648364 - 44648432
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttat 729  Q
    |||||||||||| |||  ||||||||||| |||||| ||||||||||||||||| ||| |||||||||||    
T  44648364 acacagattaaggaatgaaatgaaataatcattagacataacacttttactaaactgc-ctttactttat 44648432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 647 - 731
Target Start/End: Original strand, 26965449 - 26965532
Alignment:
Q  647 tttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||||| |||  ||||||||||||||||  ||||||||||| ||| |||||||| ||||||||||| ||| | |||||||||||    
T  26965449 tttaggctttgacacacagattaagaaataaaatgaaataatcattggatataacgcttttactaaactgc-ccttactttataa 26965532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 713
Target Start/End: Original strand, 31290928 - 31290981
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    |||||||||||| |||  ||||||||||| |||||| |||||||||||||||||    
T  31290928 acacagattaaggaatgaaatgaaataattattagacataacacttttactaaa 31290981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 713
Target Start/End: Complemental strand, 43580678 - 43580625
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    |||||||||||| ||| |||||||||||| |||| |||||||| ||||||||||    
T  43580678 acacagattaaggaatagaatgaaataatcattacatataacatttttactaaa 43580625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 642 - 731
Target Start/End: Original strand, 43600126 - 43600215
Alignment:
Q  642 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||||||||| ||||| ||  | | ||||||||  ||| ||||||| ||||||||||||| |||||||||| | | |||||||||||||    
T  43600126 gtcgttttaggtgttggcacgtataataagaaatgaaataaaataattattagatataacatttttactaaacttccctttactttataa 43600215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 661 - 717
Target Start/End: Original strand, 2662447 - 2662503
Alignment:
Q  661 cacagattaagaaattgaatgaaataataattagatataacacttttactaaattgc 717  Q
    ||||||||||  |||  ||||||||||| |||||| |||||||||||||||||||||    
T  2662447 cacagattaaagaatcaaatgaaataatcattagacataacacttttactaaattgc 2662503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 731
Target Start/End: Original strand, 1340887 - 1340953
Alignment:
Q  664 agattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    |||||||  ||| ||||||||||||||||||| ||||||||||| ||||| ||  |||||||||||||    
T  1340887 agattaaagaatggaatgaaataataattagacataacactttttctaaagtg-tctttactttataa 1340953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 666 - 713
Target Start/End: Complemental strand, 4392088 - 4392041
Alignment:
Q  666 attaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    ||||||||||  ||||||||||| |||||| |||||||||||||||||    
T  4392088 attaagaaatgaaatgaaataattattagacataacacttttactaaa 4392041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 642 - 713
Target Start/End: Complemental strand, 25061910 - 25061839
Alignment:
Q  642 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    |||||||||| || | | ||||| |||||| |||  ||||||||||| |||||| |||||||||||||||||    
T  25061910 gtcgttttagccgattgcacacatattaaggaatgaaatgaaataatcattagacataacacttttactaaa 25061839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 660 - 715
Target Start/End: Original strand, 27483147 - 27483202
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaatt 715  Q
    ||||| |||||| |||  ||||||||||| |||||| |||||||||||||||||||    
T  27483147 acacaaattaaggaatgaaatgaaataatcattagacataacacttttactaaatt 27483202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 590
Target Start/End: Original strand, 29457909 - 29457968
Alignment:
Q  531 ctatttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    ||||||||||||||| | ||||||| ||| |||||||||||||||| || |||| |||||    
T  29457909 ctatttctagactaggtacatcaatcattgaatgaatctaaaaagttaactttttcttat 29457968  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 678 - 713
Target Start/End: Original strand, 43736842 - 43736877
Alignment:
Q  678 aatgaaataataattagatataacacttttactaaa 713  Q
    ||||||||||| ||||||||||||||||||||||||    
T  43736842 aatgaaataatcattagatataacacttttactaaa 43736877  T

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Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 535 - 590
Target Start/End: Complemental strand, 54537517 - 54537462
Alignment:
Q  535 ttctagactagattcatcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    ||||||||||||| ||||||||| | ||||||||| ||||||||| |||| |||||    
T  54537517 ttctagactagatacatcaattactcaatgaatcttaaaagtcaaatttttcttat 54537462  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 645 - 731
Target Start/End: Complemental strand, 790286 - 790201
Alignment:
Q  645 gttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||||||| |||  ||||| ||||||||||  ||||||||||| |||  ||||||| ||||||||||| ||| | |||||||||||    
T  790286 gttttaggctttgacacacatattaagaaatgtaatgaaataatcattgaatataacgcttttactaaactgc-ccttactttataa 790201  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 549 - 590
Target Start/End: Original strand, 5177853 - 5177894
Alignment:
Q  549 catcaattatttaatgaatctaaaaagtcaatttttccttat 590  Q
    ||||||||||| |||||||||||||||| ||||||| |||||    
T  5177853 catcaattattgaatgaatctaaaaagttaattttttcttat 5177894  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 664 - 713
Target Start/End: Original strand, 37225553 - 37225602
Alignment:
Q  664 agattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    ||||||||||||  ||||||||||| ||| ||||||| ||||||||||||    
T  37225553 agattaagaaatacaatgaaataatcattggatataatacttttactaaa 37225602  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 713
Target Start/End: Original strand, 42857045 - 42857098
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    |||||||||||| |||  ||||||||||| |||||| |||||| ||||||||||    
T  42857045 acacagattaaggaatcaaatgaaataatcattagacataacatttttactaaa 42857098  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 713
Target Start/End: Original strand, 46362964 - 46363017
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    ||||| |||||| |||||||||||||||| ||||||  ||||| ||||||||||    
T  46362964 acacatattaaggaattgaatgaaataatcattagacctaacatttttactaaa 46363017  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 666 - 731
Target Start/End: Complemental strand, 53716196 - 53716132
Alignment:
Q  666 attaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||||||||  ||||||||||| ||| |||||||| ||||||||||| ||| | |||||||||||    
T  53716196 attaagaaatgaaatgaaataatcattggatataacgcttttactaaactgctc-ttactttataa 53716132  T

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Target: scaffold0580 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0580
Description:

Target: scaffold0580; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 642 - 713
Target Start/End: Complemental strand, 1790 - 1719
Alignment:
Q  642 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    |||| ||||| |||||| ||| ||||||||||||  ||||||||||| ||| ||||||||| ||||||||||    
T  1790 gtcgctttagacgttggcacatagattaagaaatgaaatgaaataatcattggatataacatttttactaaa 1719  T

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Target: scaffold0580; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 642 - 713
Target Start/End: Complemental strand, 9529 - 9458
Alignment:
Q  642 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    |||| ||||| |||||| ||| ||||||||||||  ||||||||||| ||| ||||||||| ||||||||||    
T  9529 gtcgctttagacgttggcacatagattaagaaatgaaatgaaataatcattggatataacatttttactaaa 9458  T

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Target: scaffold0189 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 713
Target Start/End: Original strand, 13022 - 13075
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    |||||||||||| |||  ||||||||||| |||||| |||||||||||||||||    
T  13022 acacagattaaggaatgaaatgaaataatcattagacataacacttttactaaa 13075  T

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Target: scaffold0119 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 642 - 731
Target Start/End: Complemental strand, 1759 - 1671
Alignment:
Q  642 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    |||| ||||||| || | ||| ||||||||||||  ||||||||||| ||| ||||||||  |||||||||||||| | |||||||||||    
T  1759 gtcgctttaggctttagcacaaagattaagaaatataatgaaataattattggatataacgtttttactaaattgc-ccttactttataa 1671  T

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Target: scaffold0072 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 664 - 713
Target Start/End: Original strand, 12040 - 12089
Alignment:
Q  664 agattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    |||||||| ||| |||||||||||| |||||| |||||||||||||||||    
T  12040 agattaaggaatggaatgaaataatcattagacataacacttttactaaa 12089  T

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Target: scaffold0238 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 660 - 731
Target Start/End: Original strand, 15994 - 16064
Alignment:
Q  660 acacagattaagaaattgaatgaaataataattagatataacacttttactaaattgcgctttactttataa 731  Q
    ||||| ||||| ||||| ||||||||||| |||| |||||||| |||||||||| | | |||||||||||||    
T  15994 acacatattaaaaaattaaatgaaataatcattatatataacatttttactaaactac-ctttactttataa 16064  T

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Target: scaffold0194 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 642 - 713
Target Start/End: Complemental strand, 8365 - 8294
Alignment:
Q  642 gtcgttttaggcgttggtacacagattaagaaattgaatgaaataataattagatataacacttttactaaa 713  Q
    |||| ||||||  |||| ||||||||||| |||| |||||||||||| ||| |||||||  |||||||||||    
T  8365 gtcgctttaggttttggcacacagattaaaaaatggaatgaaataatcattggatataaggcttttactaaa 8294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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