View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20777_high_3 (Length: 665)
Name: NF20777_high_3
Description: NF20777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20777_high_3 |
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| [»] scaffold0267 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 480; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 94 - 649
Target Start/End: Original strand, 46158499 - 46159054
Alignment:
| Q |
94 |
acttgcagggatagtgtccgaagctgcaacctcaaacaatattattgagctgaaggtaaaatgttgtttagtttgaattacagaaaattcttatgatctt |
193 |
Q |
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||||||| ||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46158499 |
acttgcaaggatagtgtttgaagcagcaacctcaaacaatattattgagctgcaggtaaaatgttgtttagtttgaattacagaaaattcttatgatctt |
46158598 |
T |
|
| Q |
194 |
tgtaatactacttccgtccctaactataagactacttttaaattttaactgcattaattaacatacattgcttattggcaggacctattcatgaaatcaa |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46158599 |
cgtaatactacttccgtccctaactataagactacttttaaattttaactatattaattaacatacattgcttattggcaggacctattcatgaaatcaa |
46158698 |
T |
|
| Q |
294 |
ctctagattctgtattcaaagttatccttggtgtagagctggacacaatgtgtggaacctctaaagaaggcacacaattttccaatgcttttgatgaagc |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
46158699 |
ctctagattctgtattcaaagttatccttggtgtagagctggacacaatgtgtggaacctctaaagaaggcacacaattttccaatgcttttaatgaagc |
46158798 |
T |
|
| Q |
394 |
tagtgctactattatgtttcggtatgttaactttcgctggaaggttcagaggttcctgaacattggatcggaagcagtacttnnnnnnnncctaagagtg |
493 |
Q |
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||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
46158799 |
tagtgctactattatgttttggtatgttaactttctctggaaggttcagaggttcctgaacattggatcggaagcggtacttaaaaaaaacctaagagtg |
46158898 |
T |
|
| Q |
494 |
atcaacgaatacgtgtacacaataatcaaaagcaagattgaacaatctcaaaagccacaaaataactctcccgagttgaaaggagacattttgtcaaggt |
593 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
46158899 |
atcaacgaatacgtgtacacaataatcaaaagcaagattgaacaatctcaaaagccacaaaaaaactctcccgagttgaaaggagacattttgtcaaggt |
46158998 |
T |
|
| Q |
594 |
ttctagaattgaatgagacagattcaaagtaccttaaagacgtaattttgagtttt |
649 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46158999 |
ttctagaattgaatgagacagattcaaagtaccttaaagacgtaattttgagtttt |
46159054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 261 - 649
Target Start/End: Original strand, 46165743 - 46166131
Alignment:
| Q |
261 |
ttgcttattggcaggacctattcatgaaatcaactctagattctgtattcaaagttatccttggtgtagagctggacacaatgtgtggaacctctaaaga |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||| |
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| T |
46165743 |
ttgcttattggcaggacctattcatgaaatcaactctagattctgtattcaaagttatccttggtgtagaattggacacaatgtgtggaacctatagaga |
46165842 |
T |
|
| Q |
361 |
aggcacacaattttccaatgcttttgatgaagctagtgctactattatgtttcggtatgttaactttcgctggaaggttcagaggttcctgaacattgga |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||| |
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| T |
46165843 |
aggcacacaattttccaatgcttttgatgaagctagtgctgctattatgtttcggtatgttaactttctctggaaggttcagcggttcctgaacatggga |
46165942 |
T |
|
| Q |
461 |
tcggaagcagtacttnnnnnnnncctaagagtgatcaacgaatacgtgtacacaataatcaaaagcaagattgaacaatctcaaaagccacaaaataact |
560 |
Q |
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||||||||||||||| ||||||||| ||| ||||||||||||||||| |||||| |||||||||||| ||||||||||||||||| ||||||| |
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| T |
46165943 |
tcggaagcagtacttaaaaaaaacctaagagtaatcgacgaatacgtgtacacagtaatcagaagcaagattgagcaatctcaaaagccacagaataact |
46166042 |
T |
|
| Q |
561 |
ctcccgagttgaaaggagacattttgtcaaggtttctagaattgaatgagacagattcaaagtaccttaaagacgtaattttgagtttt |
649 |
Q |
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|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46166043 |
cttctgagttgaaaggagacattttgtcaaggtttctagaattgaatgagacagattcaaagtaccttaaagacgtaattttgagtttt |
46166131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 46165428 - 46165638
Alignment:
| Q |
11 |
cagagaaaatcagcaagctatcaattctcaactaagttattgagagacttcagcagctcagtgttcaaatctaatgcggtaaaacttgcagggatagtgt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46165428 |
cagagaaaatcagcaagctatcaattctcaactaagttattgagagacttcagcagctcagtgttcaaatctaatgcggtaaaacttgcagggatagtgt |
46165527 |
T |
|
| Q |
111 |
ccgaagctgcaacctcaaacaatattattgagctgaaggtaaaatgttgtttagtttgaattacagaaaattcttatgatctttgtaatactacttccgt |
210 |
Q |
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| T |
46165528 |
ctgaagctgcaacctcaaacaatattattgagctgcaggtaaaattttgcttggtttgaaatacaaaaaattcttatgatcttcgtaatactacctccgt |
46165627 |
T |
|
| Q |
211 |
ccctaactata |
221 |
Q |
| |
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||||||||||| |
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| T |
46165628 |
ccctaactata |
46165638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 46237798 - 46237715
Alignment:
| Q |
19 |
atcagcaagctatcaattctcaactaagttattgagagacttcagcagctcagtgttcaaatctaatgcggtaaaacttgcagg |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
46237798 |
atcagcaagctatcaattctcaactaagttattgagagacttcagcagctcactgtttaaatctaatgcggtaaaacttgcagg |
46237715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 14769 - 14650
Alignment:
| Q |
14 |
agaaaatcagcaagctatcaattctcaactaagttattgagagacttcagcagctcagtgttcaaatctaatgcggtaaaacttgcagggatagtgtccg |
113 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||| || |||| || ||||||||||| | ||| |||||||||| | ||||| |||| | |
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| T |
14769 |
agaaaattagcaagctatcgattctcaactaagttattgagagaattaggcagatccgtgttcaaatccagtgcagtaaaacttgta-ggataatgtctg |
14671 |
T |
|
| Q |
114 |
aagctgcaacctcaaacaata |
134 |
Q |
| |
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||||||||| ||||||||||| |
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| T |
14670 |
aagctgcaatctcaaacaata |
14650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 3839287 - 3839168
Alignment:
| Q |
14 |
agaaaatcagcaagctatcaattctcaactaagttattgagagacttcagcagctcagtgttcaaatctaatgcggtaaaacttgcagggatagtgtccg |
113 |
Q |
| |
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||||||| ||||||||||| |||||||||||||||||||||||| || |||| || ||||||||||| | ||| |||||||||| | ||||| |||| | |
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| T |
3839287 |
agaaaattagcaagctatcgattctcaactaagttattgagagaattaggcagatccgtgttcaaatccagtgcagtaaaacttgta-ggataatgtctg |
3839189 |
T |
|
| Q |
114 |
aagctgcaacctcaaacaata |
134 |
Q |
| |
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||||||||| ||||||||||| |
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| T |
3839188 |
aagctgcaatctcaaacaata |
3839168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 26777209 - 26777250
Alignment:
| Q |
12 |
agagaaaatcagcaagctatcaattctcaactaagttattga |
53 |
Q |
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|||| ||||| |||||||||||||||||||| |||||||||| |
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| T |
26777209 |
agagcaaatctgcaagctatcaattctcaacaaagttattga |
26777250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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