View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20777_high_6 (Length: 502)
Name: NF20777_high_6
Description: NF20777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20777_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 335
Target Start/End: Original strand, 29486322 - 29486634
Alignment:
| Q |
17 |
agcaccaaggcaaaactaaagcaaaaaacaatcacattattatcgatttctttacaaaattgttagtcggccaaataaaatcttccaatgacgttattct |
116 |
Q |
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| T |
29486322 |
agcaccaaggcaaaactaaagcaaaaaacaatcacattattatcgatttctttacaaaattgttagtcggccaaataaaatcctccaatgacgttattct |
29486421 |
T |
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| Q |
117 |
taaggtttaaatagtggtcgatgtcatggagagcacgtccaagttccataaatgagaaggaagaaaataaataaaactttgtcctcccaaacatttgtgg |
216 |
Q |
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| T |
29486422 |
taaggtttaaatagtggtcgatgtcatggagagcacgtccaagttccataaatgagaaggaagaaaataaataaaactttgtcctcccaaccatttgtgg |
29486521 |
T |
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| Q |
217 |
acacacactatgcacatgatagaggaaattttcattttcatattaaatttttgcacctaaaaagtgtaaggttcaaaagaaaaagacatattgttcaata |
316 |
Q |
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| T |
29486522 |
acacacactatgcacatgatagaggagattttcattttcatattaaatttttgcacctaaaaagtgtaaggttc------aaaagacatattgttcaata |
29486615 |
T |
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| Q |
317 |
taaaaatgaaagtgaggtc |
335 |
Q |
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| T |
29486616 |
taaaaatgaaagtgaggtc |
29486634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 324 - 494
Target Start/End: Original strand, 29486663 - 29486832
Alignment:
| Q |
324 |
gaaagtgaggtctctagtcttttttaaaaatggatattaattatttggcatgcaattatttttaagtaactatagggccaagacattgactctacctaag |
423 |
Q |
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| T |
29486663 |
gaaagtgaggtctctagtctttt-taaaaatggatattaattatttggcatgcaattatttttaagtaactataggggcaagacattgactctacctaag |
29486761 |
T |
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| Q |
424 |
tctttcaaatgtatagttagcctctttacaccattcgtggtccccatggatttacctttcgttttcatctc |
494 |
Q |
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| T |
29486762 |
tctttcaaatgtatagttagcctctttacaccattcgtggtccccatagatttacctttcgttttcatctc |
29486832 |
T |
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