View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20777_high_7 (Length: 461)
Name: NF20777_high_7
Description: NF20777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20777_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 12 - 443
Target Start/End: Complemental strand, 41231036 - 41230604
Alignment:
| Q |
12 |
agagacagaggaaaagcgaccaatttggagaatggtcggtcgagtgaagctgatctaacagaaaactgaacataaaacccgtaaagcttccagaaggagc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41231036 |
agagacagaggaaaagcgaccaatttggagaatggtcggtcgagtgaagctgatctaacagaaaactgaacataaaacccgtaaagcttccagaaggagc |
41230937 |
T |
|
| Q |
112 |
tccttcctgcaaaattcatacgcttgataactttcttgcatccctcccttcaaggtagatttttaaggagatgcagcagcttagagtagatttaatcaac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
41230936 |
tccttcctgcaaaattcatacgcttgataactttcttgcatccctcccttcaaggtagatttttaaggagatgcagcagcttagagtagactcaatcaac |
41230837 |
T |
|
| Q |
212 |
cgattactactagaagaaattttaaaacatcagaaagaaggnnnnnnnnnnngaataaaagggaattttagcaatttccttcttgaagttgctgggatga |
311 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41230836 |
cgattactactagaagaaattttaaaacattagaaagaaggaaaaaaaaaaagaataaaagggaattttagcaatttccttcttgaagttgctgggatga |
41230737 |
T |
|
| Q |
312 |
aagcttacaagagaaaatatcaaattgtggagaatagtcaaacttgcatgtgcaagtattgatgcatttttgagactgcaatttgcagaatagctctttc |
411 |
Q |
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||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41230736 |
aagcttacaagagaaaatatccaatagtggagaatactcaaacttgcatgtgcaagtattgatgcatttttgagactgcaatttggagaatagctctttc |
41230637 |
T |
|
| Q |
412 |
tcatgagtcg-aaaaaatcttattgtagtgaaa |
443 |
Q |
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| T |
41230636 |
tcatgagtcgaaaaaaatcttattgtagtgaaa |
41230604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 86
Target Start/End: Complemental strand, 6110339 - 6110308
Alignment:
| Q |
55 |
gtgaagctgatctaacagaaaactgaacataa |
86 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
6110339 |
gtgaagctgatctaacagaaaactgaacataa |
6110308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 394
Target Start/End: Complemental strand, 42414443 - 42414337
Alignment:
| Q |
288 |
tccttcttgaagttgctgggatgaaagcttacaagagaaaatatcaaattgtggagaatagtcaaacttgcatgtgcaagta-ttgatgcatttttgaga |
386 |
Q |
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||||||| ||||||||||||||| ||||| ||||||| ||| || |||||||||| ||||||||||| ||||||| | |||||| |||||||||| |
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| T |
42414443 |
tccttctcaaagttgctgggatgagagcttctgagagaaag-atccaactgtggagaatggtcaaacttgcctgtgcaatcaattgatgaatttttgaga |
42414345 |
T |
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| Q |
387 |
ctgcaatt |
394 |
Q |
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|||||||| |
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|
| T |
42414344 |
ctgcaatt |
42414337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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