View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20777_low_10 (Length: 362)
Name: NF20777_low_10
Description: NF20777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20777_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 29502874 - 29503218
Alignment:
| Q |
1 |
aagaaagttagtaaaaagatagcttgagagttgagaactaaaaggacattccttatgctcccttatctttcgggtaaaatactgtttctagcctctagat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29502874 |
aagaaagttagtaaaaagatagcttgagagttgagaactaaaaggacattccttatgctcccttatctttcgggtaaaatactgtttctagcctctagat |
29502973 |
T |
|
| Q |
101 |
ggagactttttctccaaacaaagaaaccaaaacaacaaactttctctttctcaccccaaaattcagccaaacaaatttttctctgtnnnnnnnccaatac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29502974 |
ggagactttttctccaaacaaagaaaccaaaacaacaaactttctctttctcaccccaaaattcagccaaacaaatttttctctgtaaaaaaaccaatac |
29503073 |
T |
|
| Q |
201 |
catcgccattgcaagttaatcaaatttcatcatattcactcatagaacctaacatcaccataatgagagttacaacaagaacattagaatctgaattctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29503074 |
catcgccattgcaagttaatcaaatttcatcatattcactcatagaacctaacatcaccataatgagagttacaacaagaacattagaatctgaattctt |
29503173 |
T |
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| Q |
301 |
attttgatgatttgatcttgttagagagaatattttaatggcttt |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29503174 |
attttgatgatttgatcttgttagagagaatattttaatggcttt |
29503218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 194 - 345
Target Start/End: Original strand, 29492676 - 29492827
Alignment:
| Q |
194 |
ccaataccatcgccattgcaagttaatcaaatttcatcatattcactcatagaacctaacatcaccataatgagagttacaacaagaacattagaatctg |
293 |
Q |
| |
|
|||| |||||| |||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29492676 |
ccaacaccatcaccattgcagattaatcaaatttcattatattcactcattgaacctaacatcaccataatgagagttacaacaagaacattataatctg |
29492775 |
T |
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| Q |
294 |
aattcttattttgatgatttgatcttgttagagagaatattttaatggcttt |
345 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
29492776 |
aattcttattttgatgatttgatcttgttagagaaaatattttaatggcttt |
29492827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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