View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20777_low_11 (Length: 345)
Name: NF20777_low_11
Description: NF20777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20777_low_11 |
 | |
|
| [»] scaffold1173 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 11391555 - 11391205
Alignment:
| Q |
1 |
caagatgtattttgtcaaactctatgttgctcttaaattgagcagatattcaagtnnnnnnnngtttatcaaatatacta--------gcatagccattg |
92 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||| |||||||||||| |
|
|
| T |
11391555 |
caagatgtattttgtcaaactctatgttgctcttaaatttagcagatattcaaataaaaaaaagtttatcaaatatactaatatactagcatagccattg |
11391456 |
T |
|
| Q |
93 |
ggattcttttcttactatgcacatcaaacatagtagtaatctcaaaaatattgtgatgggttcatctgataataaaatggataggtttgaaagtattgaa |
192 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11391455 |
ggattctttttttactatgcacatcaaacatagtagtaatctcaaaaatattgtgatggggtcatctgataataaaatggataggttggaaagtattgaa |
11391356 |
T |
|
| Q |
193 |
gtggaataacttcatgtgtgattgttgactctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttcttaacttgcatac |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
11391355 |
gtggaataacttcatgtgtgattgttgactctttcttctcctcttttagaggtccaatcgaaactacttcagtttgacacaactttcttaactcgcatac |
11391256 |
T |
|
| Q |
293 |
tgcctttattggatcgatatcccccgataatgttaatttcttctctctcga |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11391255 |
tgcctttattggatcgatatcccccgataatgttaatttcttctctttcga |
11391205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 94 - 343
Target Start/End: Complemental strand, 11366863 - 11366614
Alignment:
| Q |
94 |
gattcttttcttactatgcacatcaaacatagtagtaatctcaaaaatattgtgatgggttcatctgataataaaatggataggtttgaaagtattgaag |
193 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||| | ||||||||||| |||| |||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
11366863 |
gattcttttcttattatgcacatcaaacgtagtagtaattttgaaaatattgtggtggggtcatctgataataaaatggataggttccaaagtgttgaag |
11366764 |
T |
|
| Q |
194 |
tggaataacttcatgtgtgattgttgactctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttcttaacttgcatact |
293 |
Q |
| |
|
|||||||||||||| ||| ||||||| || |||||||| |||||||||||||||||||| |||| ||||||| ||||||||||||||| |||||| ||| |
|
|
| T |
11366763 |
tggaataacttcatttgtatttgttgaatccttcttctcatcttttagaggtccaatcgatactatttcagtttgacacaactttcttagcttgcacact |
11366664 |
T |
|
| Q |
294 |
gcctttattggatcgatatcccccgataatgttaatttcttctctctcga |
343 |
Q |
| |
|
|||||| |||||| |||||||| |||| ||| |||||||||||| |||| |
|
|
| T |
11366663 |
acctttactggatcaatatccccagatactgtcaatttcttctctttcga |
11366614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 94 - 343
Target Start/End: Complemental strand, 11385409 - 11385160
Alignment:
| Q |
94 |
gattcttttcttactatgcacatcaaacatagtagtaatctcaaaaatattgtgatgggttcatctgataataaaatggataggtttgaaagtattgaag |
193 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||| | ||||||||||| |||| |||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
11385409 |
gattcttttcttattatgcacatcaaacgtagtagtaattttgaaaatattgtggtggggtcatctgataataaaatggataggttccaaagtgttgaag |
11385310 |
T |
|
| Q |
194 |
tggaataacttcatgtgtgattgttgactctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttcttaacttgcatact |
293 |
Q |
| |
|
|||||||| ||||| ||| ||||||| || |||||||| |||||||||||||||||||| |||| ||||||| ||||||||||||||| |||||| ||| |
|
|
| T |
11385309 |
tggaataaattcatttgtatttgttgaatccttcttctcatcttttagaggtccaatcgatactatttcagtttgacacaactttcttagcttgcacact |
11385210 |
T |
|
| Q |
294 |
gcctttattggatcgatatcccccgataatgttaatttcttctctctcga |
343 |
Q |
| |
|
|||||| |||||| |||||||| |||| ||| |||||||||||| |||| |
|
|
| T |
11385209 |
acctttactggatcaatatccccagatactgtcaatttcttctctttcga |
11385160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 94 - 343
Target Start/End: Complemental strand, 11375571 - 11375322
Alignment:
| Q |
94 |
gattcttttcttactatgcacatcaaacatagtagtaatctcaaaaatattgtgatgggttcatctgataataaaatggataggtttgaaagtattgaag |
193 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||| | ||||||||||| |||| |||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
11375571 |
gattcttttcttattatgcacatcaaacgtagtagtaattttgaaaatattgtggtggggtcatctgataataaaatggataggttccaaagtgttgaag |
11375472 |
T |
|
| Q |
194 |
tggaataacttcatgtgtgattgttgactctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttcttaacttgcatact |
293 |
Q |
| |
|
|||||||| ||||| ||| ||||||| || |||||||| |||||||||||||||||||| |||| ||||||| ||||||||||||||| |||||| ||| |
|
|
| T |
11375471 |
tggaataaattcatttgtatttgttgaatccttcttctcatcttttagaggtccaatcgatactatttcagtttgacacaactttcttagcttgcacact |
11375372 |
T |
|
| Q |
294 |
gcctttattggatcgatatcccccgataatgttaatttcttctctctcga |
343 |
Q |
| |
|
|||||| |||||| |||||||| |||| | | |||||||||||| |||| |
|
|
| T |
11375371 |
acctttactggatcaatatccccagatactatcaatttcttctctttcga |
11375322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1173 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: scaffold1173
Description:
Target: scaffold1173; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 94 - 343
Target Start/End: Complemental strand, 2190 - 1941
Alignment:
| Q |
94 |
gattcttttcttactatgcacatcaaacatagtagtaatctcaaaaatattgtgatgggttcatctgataataaaatggataggtttgaaagtattgaag |
193 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| | ||||||| ||| | | ||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
2190 |
gattcttttcttattatgcacatcaaacatagtagtaattttgaaaatatcgtggttgagtcatctgataataaaatggataggtgtcaaagtattgaag |
2091 |
T |
|
| Q |
194 |
tggaataacttcatgtgtgattgttgactctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttcttaacttgcatact |
293 |
Q |
| |
|
|||||||||||||| ||| ||||||| || ||||||| ||||||| |||||||||||| |||| ||||||| ||||||||||||||| |||||| ||| |
|
|
| T |
2090 |
tggaataacttcatttgtatttgttgaatccttcttcttatcttttaaaggtccaatcgatactatttcagtttgacacaactttcttagcttgcacact |
1991 |
T |
|
| Q |
294 |
gcctttattggatcgatatcccccgataatgttaatttcttctctctcga |
343 |
Q |
| |
|
||||||| |||||| ||||||||||||||||| |||||||||||| |||| |
|
|
| T |
1990 |
gcctttactggatcaatatcccccgataatgtcaatttcttctctttcga |
1941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 94 - 343
Target Start/End: Original strand, 17186719 - 17186968
Alignment:
| Q |
94 |
gattcttttcttactatgcacatcaaacatagtagtaatctcaaaaatattgtgatgggttcatctgataataaaatggataggtttgaaagtattgaag |
193 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||| | ||||||| ||| | || ||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
17186719 |
gattgttttcttattatgcacatcaaacatagtagtaatattgaaaatatcgtggttgggtcatctgataataaaatggataggtgtcaaagtattgaac |
17186818 |
T |
|
| Q |
194 |
tggaataacttcatgtgtgattgttgactctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttcttaacttgcatact |
293 |
Q |
| |
|
|||||||||||||| ||| ||||||| || |||||||| ||||||| ||||||||| || |||| ||||||| ||||||||||||||| |||||| ||| |
|
|
| T |
17186819 |
tggaataacttcatttgtatttgttgaatccttcttctcatcttttaaaggtccaattgatactatttcagtttgacacaactttcttagcttgcacact |
17186918 |
T |
|
| Q |
294 |
gcctttattggatcgatatcccccgataatgttaatttcttctctctcga |
343 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| |||||||||||| |||| |
|
|
| T |
17186919 |
gcctttacaggatcaatatcccccgataatgtcaatttcttctctttcga |
17186968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 121 - 338
Target Start/End: Original strand, 17192629 - 17192846
Alignment:
| Q |
121 |
catagtagtaatctcaaaaatattgtgatgggttcatctgataataaaatggataggtttgaaagtattgaagtggaataacttcatgtgtgattgttga |
220 |
Q |
| |
|
|||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
17192629 |
cataatagtaatcttgaaaatattgtgatggggtcatctgataataaaatggataggtttcaaagtattgaagtggaataacttcatttgtatttgttga |
17192728 |
T |
|
| Q |
221 |
ctctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttcttaacttgcatactgcctttattggatcgatatcccccgat |
320 |
Q |
| |
|
| |||||||||| ||||||||||||||||| ||||||| ||||||| ||||||||||||||| |||||| ||| | ||||| ||||| |||||||| ||| |
|
|
| T |
17192729 |
ccctttcttctcttcttttagaggtccaattgaaactatttcagtttgacacaactttcttagcttgcacactccttttatcggatcaatatcccctgat |
17192828 |
T |
|
| Q |
321 |
aatgttaatttcttctct |
338 |
Q |
| |
|
| ||| |||||||||||| |
|
|
| T |
17192829 |
attgtcaatttcttctct |
17192846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 17854578 - 17854520
Alignment:
| Q |
221 |
ctctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttc |
279 |
Q |
| |
|
||||||||||||||| ||||||| |||||| ||||||||||| ||| |||||||||||| |
|
|
| T |
17854578 |
ctctttcttctcctcatttagagctccaattgaaactacttctgtttgacacaactttc |
17854520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University