View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20777_low_14 (Length: 295)
Name: NF20777_low_14
Description: NF20777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20777_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 38482452 - 38482736
Alignment:
| Q |
1 |
cgaaactatctctcgttttgatatttcagctccattgtcaagggtgttggttccatccatcattgtttgggaattagattaggcttagtcggcattggat |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38482452 |
cgaaactatctctcgttctgatatttcagctccgttgtcaagggtgttggttccatctatcattgtttgggaattagattaggcttcgtcggcattggat |
38482551 |
T |
|
| Q |
101 |
gcagttagttgcagttaacacctcggatccgtccaatcaagatcagacagtttagatctaaaattctgaaattaaaatctagatcgtgtgatcttcattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38482552 |
gcagttagttgcagttaacacctcggatccatccaatcaagatcagacagtttagatctaaaattctgaaattaaaatctagatcgtgtgatcttcattt |
38482651 |
T |
|
| Q |
201 |
gacggcctaaactcattgattacatgattgtatcaatttttgactgcattaaacatgatcctattgtttgtatttactctctgtg |
285 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38482652 |
ggcggcctaaactcattgattacatgattgtatcaatttttgactgcatcaaacatgatcctattgtttgtgtttactctctgtg |
38482736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University