View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20777_low_15 (Length: 288)

Name: NF20777_low_15
Description: NF20777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20777_low_15
NF20777_low_15
[»] chr8 (5 HSPs)
chr8 (19-288)||(454481-454747)
chr8 (25-194)||(18867234-18867403)
chr8 (25-194)||(35743743-35743912)
chr8 (25-194)||(10685828-10685997)
chr8 (80-197)||(26299724-26299841)
[»] chr4 (3 HSPs)
chr4 (29-197)||(16625561-16625729)
chr4 (67-197)||(5146259-5146389)
chr4 (25-194)||(9225968-9226137)
[»] chr5 (7 HSPs)
chr5 (25-194)||(33789710-33789879)
chr5 (67-202)||(24557190-24557325)
chr5 (67-202)||(24598222-24598357)
chr5 (25-194)||(31398556-31398725)
chr5 (67-194)||(27448177-27448304)
chr5 (25-194)||(43595475-43595644)
chr5 (25-194)||(43628269-43628438)
[»] chr7 (7 HSPs)
chr7 (29-197)||(49090039-49090207)
chr7 (67-197)||(9186751-9186881)
chr7 (29-187)||(18412019-18412177)
chr7 (25-194)||(16883281-16883450)
chr7 (25-187)||(21644398-21644560)
chr7 (25-194)||(24262887-24263056)
chr7 (67-186)||(21987282-21987401)
[»] chr3 (7 HSPs)
chr3 (67-197)||(3325142-3325274)
chr3 (29-197)||(1309222-1309390)
chr3 (67-197)||(16262713-16262843)
chr3 (25-194)||(8515448-8515617)
chr3 (25-194)||(32478694-32478863)
chr3 (25-187)||(2673784-2673946)
chr3 (68-193)||(28490780-28490905)
[»] chr2 (2 HSPs)
chr2 (25-194)||(19347632-19347801)
chr2 (67-187)||(25394247-25394367)
[»] chr1 (2 HSPs)
chr1 (67-197)||(47100424-47100554)
chr1 (25-194)||(41396593-41396762)
[»] scaffold0197 (1 HSPs)
scaffold0197 (25-194)||(15873-16042)
[»] chr6 (1 HSPs)
chr6 (25-187)||(14739136-14739298)
[»] scaffold0006 (2 HSPs)
scaffold0006 (67-187)||(869-989)
scaffold0006 (67-187)||(9025-9145)


Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 454481 - 454747
Alignment:
Q  19 agtgaagcatctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaa 118  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||    
T  454481 agtgcagcatctcataataaatttgaattgtggcatttaaggtgacaacatgttagtgaaagaggtttagtagaactagccaaacaaggttttttaggaa 454580  T
Q  119 gagaaaatttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtggtatacatttggatttttggattct 218  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  454581 gagaaaatttggataagctagaatttcgcaatcattgcatactagacaaacaacatagagtgaagtttgaaagtggtatacattcggatttttggattct 454680  T
Q  219 tctttagatacttaatcacgggggatatactccccctctcgtgaacttttctccatctcttcatattcac 288  Q
    |||||||||||||| |||| |||||||||||  |||||||||||||||||||||||||||||||||||||    
T  454681 tctttagatacttactcac-ggggatatact--ccctctcgtgaacttttctccatctcttcatattcac 454747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 194
Target Start/End: Original strand, 18867234 - 18867403
Alignment:
Q  25 gcatctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaa 124  Q
    |||||||||||||| | ||||||||||||||  ||||     ||||| |||||||| |||||||| |||||||| ||||||| |||  |||| | ||| |    
T  18867234 gcatctcataataattctgaattgtggcatttgaggttggggcatgttagtgaaaggggtttagttgaactagctaaacaaggtttgctagggaaagata 18867333  T
Q  125 atttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtgg 194  Q
    | || || |||||||||||| |  | |||| ||||||||  ||| ||||||| |||||||||| ||||||    
T  18867334 aattggacaagctagaattttgtgagcattgcatactaggaaaacaacatagggtgaagtttggaagtgg 18867403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 194
Target Start/End: Complemental strand, 35743912 - 35743743
Alignment:
Q  25 gcatctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaa 124  Q
    |||||||||||||| | ||||||||||||||  || |     ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| |    
T  35743912 gcatctcataataattctgaattgtggcatttgagattggggcatgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagata 35743813  T
Q  125 atttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtgg 194  Q
    | || ||||||||||||||| |  | |||| |||||||| |||| ||||||| |||||||||| ||||||    
T  35743812 aattggataagctagaattttgtgaacattgcatactaggcaaacaacatagggtgaagtttggaagtgg 35743743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 194
Target Start/End: Original strand, 10685828 - 10685997
Alignment:
Q  25 gcatctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaa 124  Q
    |||||||||||||| | ||||||||||||||  || |     ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| |    
T  10685828 gcatctcataataattctgaattgtggcatttgagattggggcatgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagata 10685927  T
Q  125 atttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtgg 194  Q
    | || || |||||||||||| |  | |||| |||||||| |||| ||||||| |||||||||| ||||||    
T  10685928 aattggacaagctagaattttgtgaacattgcatactaggcaaacaacatagggtgaagtttggaagtgg 10685997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 197
Target Start/End: Complemental strand, 26299841 - 26299724
Alignment:
Q  80 gaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagacaaataacatagagt 179  Q
    |||||||||| ||| |||||||||||| |||  |||||| ||| || || || |||||||||||| |  | |||| |||||||| |||  |||||| |||    
T  26299841 gaggtttagttgaattagcaaaacaaggtttgataggaaaagataaattggacaagctagaattttgtgagcattgcatactaggcaagcaacataaagt 26299742  T
Q  180 gaagtttgaaagtggtat 197  Q
     |||||||  ||||||||    
T  26299741 aaagtttggtagtggtat 26299724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 29 - 197
Target Start/End: Original strand, 16625561 - 16625729
Alignment:
Q  29 ctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaattt 128  Q
    |||||||||| |||||||||||||||| ||| |     ||||| ||||||||||||||||| |||||||| ||||||| |||  |||||| ||| || ||    
T  16625561 ctcataataattttgaattgtggcatttaagattggggcatgttagtgaaagaggtttagttgaactagctaaacaaggtttgctaggaaaagataaatt 16625660  T
Q  129 agataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtggtat 197  Q
     || |||||||||||| |  | |||| |||||||| |||  |||||||||| |||||||  ||||||||    
T  16625661 ggacaagctagaattttgtgagcattgcatactaggcaagcaacatagagtaaagtttggtagtggtat 16625729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 197
Target Start/End: Complemental strand, 5146389 - 5146259
Alignment:
Q  67 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 166  Q
    ||||| ||||||||||||||||| |||||||| |||||||||||  ||  || ||| || || || ||| |||||||| |  | |||| |||||||| ||    
T  5146389 catgttagtgaaagaggtttagttgaactagctaaacaagatttgctaaaaaaagataaattggacaagttagaattttgtgagcattgcatactaggca 5146290  T
Q  167 aataacatagagtgaagtttgaaagtggtat 197  Q
    |  |||||||||| |||||||  ||||||||    
T  5146289 agcaacatagagtaaagtttggtagtggtat 5146259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 194
Target Start/End: Original strand, 9225968 - 9226137
Alignment:
Q  25 gcatctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaa 124  Q
    |||||||||||||| | ||||||||||||||  || |     ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| |    
T  9225968 gcatctcataataattctgaattgtggcatttgagattggggcatgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagata 9226067  T
Q  125 atttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtgg 194  Q
    | ||  | |||||||||||| |  | |||| |||||||| |||| ||||||| |||||||||| ||||||    
T  9226068 aattgaacaagctagaattttgtgagcattgcatactaggcaaacaacatagggtgaagtttggaagtgg 9226137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 194
Target Start/End: Complemental strand, 33789879 - 33789710
Alignment:
Q  25 gcatctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaa 124  Q
    |||||||||||||| | ||||||||||||||  || |     ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| |    
T  33789879 gcatctcataataattctgaattgtggcatttgagattggggcatgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagata 33789780  T
Q  125 atttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtgg 194  Q
    | || ||||||||||||||| | || |||| |||||||| |||| ||||||| |||||||||| ||||||    
T  33789779 aattggataagctagaattttgtaaacattgcatactaggcaaacaacatagggtgaagtttggaagtgg 33789710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 202
Target Start/End: Original strand, 24557190 - 24557325
Alignment:
Q  67 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 166  Q
    ||||| |||||||||| |||||| |||||||| ||||||| |||  |||||| ||| || ||||| |||||||||||| |  | |||| ||||||||  |    
T  24557190 catgttagtgaaagagatttagttgaactagctaaacaaggtttgctaggaaaagataaattagacaagctagaattttgtgagcattgcatactaggaa 24557289  T
Q  167 aataacatagagtgaagtttgaaagtggtatacatt 202  Q
    |  ||||||| || |||||||| |||||||| ||||    
T  24557290 agcaacatagggtcaagtttgatagtggtatgcatt 24557325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 202
Target Start/End: Original strand, 24598222 - 24598357
Alignment:
Q  67 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 166  Q
    ||||| |||||||||| |||||| |||||||| ||||||| |||  |||||| ||| || ||||| |||||||||||| |  | |||| ||||||||  |    
T  24598222 catgttagtgaaagagatttagttgaactagctaaacaaggtttgctaggaaaagataaattagacaagctagaattttgtgagcattgcatactaggaa 24598321  T
Q  167 aataacatagagtgaagtttgaaagtggtatacatt 202  Q
    |  ||||||| || |||||||| |||||||| ||||    
T  24598322 agcaacatagggtcaagtttgatagtggtatgcatt 24598357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 194
Target Start/End: Original strand, 31398556 - 31398725
Alignment:
Q  25 gcatctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaa 124  Q
    |||||||||||||| | ||||||||||||||  || |     ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| |    
T  31398556 gcatctcataataattctgaattgtggcatttgagattggggcatgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagata 31398655  T
Q  125 atttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtgg 194  Q
    | || || |||||||||||| |  | |||| |||||||| |||| ||||||| |||||||||| ||||||    
T  31398656 aattggacaagctagaattttgtgaacattgcatactaggcaaacaacatagggtgaagtttggaagtgg 31398725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 194
Target Start/End: Complemental strand, 27448304 - 27448177
Alignment:
Q  67 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 166  Q
    ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| || || || |||||||||||| |  | |||| |||||||| ||    
T  27448304 catgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataaattggacaagctagaattttgtgagcattgcatactaggca 27448205  T
Q  167 aataacatagagtgaagtttgaaagtgg 194  Q
    || ||||||| |||||||||| ||||||    
T  27448204 aacaacatagggtgaagtttggaagtgg 27448177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 194
Target Start/End: Complemental strand, 43595644 - 43595475
Alignment:
Q  25 gcatctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaa 124  Q
    |||||||||||||| | ||||||||||||||  || |     |||||  |||| || |||||||| |||||||| ||||||| |||  |||| | ||| |    
T  43595644 gcatctcataataattctgaattgtggcatttgagattggggcatgttcgtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagata 43595545  T
Q  125 atttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtgg 194  Q
    | || || |||||||||||| |  | |||| |||||||  |||| ||||||| |||||||||| ||||||    
T  43595544 aattggacaagctagaattttgtgagcattgcatactaagcaaacaacatagggtgaagtttggaagtgg 43595475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 194
Target Start/End: Complemental strand, 43628438 - 43628269
Alignment:
Q  25 gcatctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaa 124  Q
    |||||||||||||| | ||||||||||||||  || |     |||||  |||| || |||||||| |||||||| ||||||| |||  |||| | ||| |    
T  43628438 gcatctcataataattctgaattgtggcatttgagattggggcatgttcgtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagata 43628339  T
Q  125 atttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtgg 194  Q
    | || || |||||||||||| |  | |||| |||||||  |||| ||||||| |||||||||| ||||||    
T  43628338 aattggacaagctagaattttgtgagcattgcatactaagcaaacaacatagggtgaagtttggaagtgg 43628269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 197
Target Start/End: Complemental strand, 49090207 - 49090039
Alignment:
Q  29 ctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaattt 128  Q
    |||||||||| | ||||||||||||||  || |   | ||||| ||||||||||||||||| |||||| | ||||||| |||  |||||| ||| || ||    
T  49090207 ctcataataattctgaattgtggcatttgagattggagcatgttagtgaaagaggtttagttgaactaactaaacaaggtttgctaggaaaagataaatt 49090108  T
Q  129 agataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtggtat 197  Q
     || |||||||||||| | || |||| |||||||| |||  |||||||||| |||||||  ||||||||    
T  49090107 ggacaagctagaattttgtaagcattgcatactaggcaagcaacatagagtaaagtttggtagtggtat 49090039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 197
Target Start/End: Original strand, 9186751 - 9186881
Alignment:
Q  67 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 166  Q
    ||||| ||||||||||||||||| |||||||| ||||||| |||| ||| || ||| || || || |||||||||||| |  | |||| |||||||| ||    
T  9186751 catgttagtgaaagaggtttagttgaactagctaaacaaggttttctagtaaaagataaattggacaagctagaattttgtgagcattgcatactaggca 9186850  T
Q  167 aataacatagagtgaagtttgaaagtggtat 197  Q
    |  |||||||||| |||||||  ||||||||    
T  9186851 agcaacatagagtaaagtttggtagtggtat 9186881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 187
Target Start/End: Complemental strand, 18412177 - 18412019
Alignment:
Q  29 ctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaattt 128  Q
    |||||||||| | ||||||||||||||  ||||     ||||| ||||||||||||||||| |||||||| ||||||| |||  |||||| ||| || ||    
T  18412177 ctcataataattctgaattgtggcatttgaggttggggcatgttagtgaaagaggtttagttgaactagctaaacaaggtttgctaggaaaagataaatt 18412078  T
Q  129 agataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttg 187  Q
     || |||||||||||| |  | |||| |||||||| |||  |||||||||| |||||||    
T  18412077 ggacaagctagaattttgtgagcattgcatactaggcaagcaacatagagtaaagtttg 18412019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 194
Target Start/End: Complemental strand, 16883450 - 16883281
Alignment:
Q  25 gcatctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaa 124  Q
    |||||||||||||| | ||||||||||||||  || |     ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| |    
T  16883450 gcatctcataataattctgaattgtggcatttgagattggggcatgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagata 16883351  T
Q  125 atttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtgg 194  Q
    | || ||||||||||||||| |  | |||| |||||||| |||| ||||||| |||||||||| ||||||    
T  16883350 aattggataagctagaattttgtgaacattgcatactaggcaaacaacatagggtgaagtttggaagtgg 16883281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 187
Target Start/End: Complemental strand, 21644560 - 21644398
Alignment:
Q  25 gcatctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaa 124  Q
    |||||||||||||| | ||||||||||||||  ||||     ||||| |||||||||| |||||| |||||||| |||||||||||  |||| | ||| |    
T  21644560 gcatctcataataattctgaattgtggcatttgaggttggggcatgttagtgaaagagatttagttgaactagctaaacaagatttgctagggaaagata 21644461  T
Q  125 atttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttg 187  Q
    | || || |||||||||||| |  | || | |||||||| |||  |||||| |||||||||||    
T  21644460 aattggacaagctagaattttgtgagcaatgcatactaggcaagcaacatatagtgaagtttg 21644398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 194
Target Start/End: Original strand, 24262887 - 24263056
Alignment:
Q  25 gcatctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaa 124  Q
    |||||||||||||| | ||||||||||||||  || |     ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| |    
T  24262887 gcatctcataataattctgaattgtggcatttgagattggggcatgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagata 24262986  T
Q  125 atttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtgg 194  Q
    | || || |||||||||||| |  | |||| |||||||| |||| ||||||| |||||||||| ||||||    
T  24262987 aattggacaagctagaattttgtgaacattgcatactaggcaaacaacatagggtgaagtttggaagtgg 24263056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 186
Target Start/End: Complemental strand, 21987401 - 21987282
Alignment:
Q  67 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 166  Q
    ||||| |||||||||||||||||  ||||||| ||||||| |||  |||||| ||| |  || || |||||||||||| | || |||| |||||||| ||    
T  21987401 catgttagtgaaagaggtttagttaaactagctaaacaaggtttgctaggaaaagatacattggacaagctagaattttgtaagcattgcatactaggca 21987302  T
Q  167 aataacatagagtgaagttt 186  Q
    || ||| |||||| ||||||    
T  21987301 aacaacgtagagtaaagttt 21987282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 67 - 197
Target Start/End: Original strand, 3325142 - 3325274
Alignment:
Q  67 catgtcagtgaaagaggttta--gtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactaga 164  Q
    ||||| |||||||||||||||  || |||||||| ||||||||||| ||||||| ||| || || || |||||||||||| |  | |||| ||||||||     
T  3325142 catgttagtgaaagaggtttatagttgaactagctaaacaagatttgttaggaaaagataaattggacaagctagaattttgtgagcattgcatactagg 3325241  T
Q  165 caaataacatagagtgaagtttgaaagtggtat 197  Q
    |||  |||||||||| |||||||  ||||||||    
T  3325242 caagcaacatagagtaaagtttggtagtggtat 3325274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 197
Target Start/End: Complemental strand, 1309390 - 1309222
Alignment:
Q  29 ctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaattt 128  Q
    |||||||||| | ||||||||||||||  ||||     ||||| ||||||||||||||||| |||||||| ||||||| |||  |||||| ||| || ||    
T  1309390 ctcataataattctgaattgtggcatttgaggttgaggcatgttagtgaaagaggtttagttgaactagctaaacaaggtttgctaggaaaagataaatt 1309291  T
Q  129 agataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtggtat 197  Q
     || |||||||||||| |  | |||| ||||||||  ||  |||||||||| |||||||  ||||||||    
T  1309290 ggacaagctagaattttgtgagcattgcatactaggaaagcaacatagagtaaagtttggtagtggtat 1309222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 197
Target Start/End: Complemental strand, 16262843 - 16262713
Alignment:
Q  67 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 166  Q
    ||||| ||||||||||||||||| |||||||| ||||||| |||| |||||| | | || || || |||||||||||| |  | |||| |||||||| ||    
T  16262843 catgttagtgaaagaggtttagttgaactagccaaacaaggttttctaggaaaaaataaattggacaagctagaattttgtgagcattgcatactaggca 16262744  T
Q  167 aataacatagagtgaagtttgaaagtggtat 197  Q
       |||||||||| |||||||  ||||||||    
T  16262743 ggcaacatagagtaaagtttggtagtggtat 16262713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 194
Target Start/End: Complemental strand, 8515617 - 8515448
Alignment:
Q  25 gcatctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaa 124  Q
    |||||||||||||| | ||||||||||||||  || |     ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| |    
T  8515617 gcatctcataataattctgaattgtggcatttgagattggggcatgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagata 8515518  T
Q  125 atttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtgg 194  Q
    | || || |||||||||||| |  | |||| |||||||| |||| ||||||| |||||||||| ||||||    
T  8515517 aattggacaagctagaattttgtgaacattgcatactaggcaaacaacatagggtgaagtttggaagtgg 8515448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 194
Target Start/End: Complemental strand, 32478863 - 32478694
Alignment:
Q  25 gcatctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaa 124  Q
    |||||||||||||| | ||||||||||||||  || |     ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| |    
T  32478863 gcatctcataataattctgaattgtggcatttgagattggggcatgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagata 32478764  T
Q  125 atttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtgg 194  Q
    | || || |||||||||||| |  | |||| |||||||| |||| ||||||| |||||||||| ||||||    
T  32478763 aattggacaagctagaattttgtgaacattgcatactaggcaaacaacatagggtgaagtttggaagtgg 32478694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 187
Target Start/End: Original strand, 2673784 - 2673946
Alignment:
Q  25 gcatctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaa 124  Q
    |||||||||||||| | ||||||||||||||  || |     ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| |    
T  2673784 gcatctcataataattctgaattgtggcatttgagattggggcatgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagata 2673883  T
Q  125 atttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttg 187  Q
    | || || |||||||||||| |  | |||| |||||||| |||| ||||||| ||||||||||    
T  2673884 aattggacaagctagaattttgtgaacattgcatactaggcaaacaacatagggtgaagtttg 2673946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 193
Target Start/End: Original strand, 28490780 - 28490905
Alignment:
Q  68 atgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagacaa 167  Q
    |||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| || ||  | |||||||||||| |  | |||| |||||||| |||    
T  28490780 atgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagataaattgtacaagctagaattttgtgagcattgcatactaggcaa 28490879  T
Q  168 ataacatagagtgaagtttgaaagtg 193  Q
    | ||||||| |||||||||| |||||    
T  28490880 acaacatagggtgaagtttggaagtg 28490905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 194
Target Start/End: Complemental strand, 19347801 - 19347632
Alignment:
Q  25 gcatctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaa 124  Q
    |||||||||||||| | ||||||||||||||  || |     ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| |    
T  19347801 gcatctcataataattctgaattgtggcatttgagattggggcatgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagata 19347702  T
Q  125 atttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtgg 194  Q
    | || ||||||||||||||| |  | |||| |||||||| |||| ||||||| |||||||||| ||||||    
T  19347701 aattggataagctagaattttgtgaacattgcatactaggcaaacaacatagggtgaagtttggaagtgg 19347632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 187
Target Start/End: Complemental strand, 25394367 - 25394247
Alignment:
Q  67 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 166  Q
    ||||| ||||||||||||||||| |||||||| ||||||| |||  |||||| ||| || || || |||||||||||| || | |||| ||| |||| ||    
T  25394367 catgttagtgaaagaggtttagttgaactagctaaacaaggtttgctaggaaaagataaattggacaagctagaattttgcgagcattgcatgctaggca 25394268  T
Q  167 aataacatagagtgaagtttg 187  Q
    |  |||||||||| |||||||    
T  25394267 agcaacatagagtaaagtttg 25394247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 197
Target Start/End: Original strand, 47100424 - 47100554
Alignment:
Q  67 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 166  Q
    ||||| ||||||||||||||||| |||||||| ||||||| |||  |||||| ||| || || || |||||||||||| |  | |||| |||| ||| ||    
T  47100424 catgttagtgaaagaggtttagttgaactagctaaacaaggtttgctaggaaaagataaattggacaagctagaattttgtgaacattgcatattaggca 47100523  T
Q  167 aataacatagagtgaagtttgaaagtggtat 197  Q
    |  |||||||||| |||||||  ||||||||    
T  47100524 agcaacatagagtaaagtttggtagtggtat 47100554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 194
Target Start/End: Complemental strand, 41396762 - 41396593
Alignment:
Q  25 gcatctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaa 124  Q
    |||||||||||||| | ||||||||||||||  || |     ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| |    
T  41396762 gcatctcataataattctgaattgtggcatttgagattggggcatgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagata 41396663  T
Q  125 atttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtgg 194  Q
    | || || |||||||||||| |  | |||| |||||||| |||| ||||||| |||||||||| ||||||    
T  41396662 aattggacaagctagaattttgtgagcattgcatactaggcaaacaacatagggtgaagtttggaagtgg 41396593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 194
Target Start/End: Original strand, 15873 - 16042
Alignment:
Q  25 gcatctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaa 124  Q
    |||||||||||||| | ||||||||||||||  || |     ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| |    
T  15873 gcatctcataataattctgaattgtggcatttgagattggggcatgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagata 15972  T
Q  125 atttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttgaaagtgg 194  Q
    | || || |||||||||||| |  | |||| |||||||| |||| ||||||| |||||||||| ||||||    
T  15973 aattggacaagctagaattttgtgaacattgcatactaggcaaacaacatagggtgaagtttggaagtgg 16042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 187
Target Start/End: Original strand, 14739136 - 14739298
Alignment:
Q  25 gcatctcataataaatttgaattgtggcattcaaggtgacaacatgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaa 124  Q
    |||||||||||||| | ||||||||||||||  || |     ||||| ||||| || |||||||| |||||||| ||||||| |||  |||| | ||| |    
T  14739136 gcatctcataataattctgaattgtggcatttgagattggggcatgttagtgagaggggtttagttgaactagctaaacaaggtttgctagggaaagata 14739235  T
Q  125 atttagataagctagaatttagcaatcattacatactagacaaataacatagagtgaagtttg 187  Q
    | || || |||||||||||| |  | |||| |||||||| |||| ||||||| ||||||||||    
T  14739236 aattggacaagctagaattttgtgagcattgcatactaggcaaacaacatagggtgaagtttg 14739298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 187
Target Start/End: Complemental strand, 989 - 869
Alignment:
Q  67 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 166  Q
    ||||| ||||||||||||||||| |||||||| ||||| | |||  |||||| ||| || || || |||||||||||| |  | |||| |||||||  ||    
T  989 catgttagtgaaagaggtttagttgaactagctaaacagggtttgctaggaaaagataaattggacaagctagaattttgtgagcattgcatactaagca 890  T
Q  167 aataacatagagtgaagtttg 187  Q
    |  |||||||||| |||||||    
T  889 agaaacatagagtaaagtttg 869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 187
Target Start/End: Complemental strand, 9145 - 9025
Alignment:
Q  67 catgtcagtgaaagaggtttagtagaactagcaaaacaagattttttaggaagagaaaatttagataagctagaatttagcaatcattacatactagaca 166  Q
    ||||| ||||||||||||||||| |||||||| ||||| | |||  |||||| ||| || || || |||||||||||| |  | |||| |||||||  ||    
T  9145 catgttagtgaaagaggtttagttgaactagctaaacagggtttgctaggaaaagataaattggacaagctagaattttgtgagcattgcatactaagca 9046  T
Q  167 aataacatagagtgaagtttg 187  Q
    |  |||||||||| |||||||    
T  9045 agaaacatagagtaaagtttg 9025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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