View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20777_low_16 (Length: 273)

Name: NF20777_low_16
Description: NF20777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20777_low_16
NF20777_low_16
[»] chr3 (5 HSPs)
chr3 (103-256)||(11391622-11391776)
chr3 (176-256)||(11367031-11367111)
chr3 (176-256)||(11375739-11375819)
chr3 (177-250)||(11385512-11385585)
chr3 (188-250)||(11362713-11362775)
[»] scaffold1173 (1 HSPs)
scaffold1173 (176-250)||(2358-2432)
[»] chr7 (2 HSPs)
chr7 (188-256)||(17186595-17186663)
chr7 (176-251)||(17192154-17192228)


Alignment Details
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 103 - 256
Target Start/End: Original strand, 11391622 - 11391776
Alignment:
Q  103 aaagcatgcaaaaacatcacaagaaattgatctcaccatcaactatttctaatcacaagaaacatnnnnnnng-tatattaataagataaaatatatata 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||    
T  11391622 aaagcatgcaaaaacatcacaagaaattgatctcaccatcaactatttctaatcacaagaaacataaaaaaaaatatattaataagataaaatatatata 11391721  T
Q  202 gtgcttgaaacatgcaagtccaagcagtgcttcaatttgttagtaatgactaact 256  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11391722 gtgcttgaaacatgcaagttcaagcagtgcttcaatttgttagtaatgactaact 11391776  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 176 - 256
Target Start/End: Original strand, 11367031 - 11367111
Alignment:
Q  176 tatattaataagataaaatatatatagtgcttgaaacatgcaagtccaagcagtgcttcaatttgttagtaatgactaact 256  Q
    ||||||||||||||||||||||| ||||| |||||||||| |||||||||| |||||||||||||||| |||||| |||||    
T  11367031 tatattaataagataaaatatatgtagtgtttgaaacatgtaagtccaagcggtgcttcaatttgttactaatgagtaact 11367111  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 176 - 256
Target Start/End: Original strand, 11375739 - 11375819
Alignment:
Q  176 tatattaataagataaaatatatatagtgcttgaaacatgcaagtccaagcagtgcttcaatttgttagtaatgactaact 256  Q
    ||||||||||||||||||||||| ||||| |||||||||| |||||||||| |||||||||||||||| |||||| |||||    
T  11375739 tatattaataagataaaatatatgtagtgtttgaaacatgtaagtccaagcggtgcttcaatttgttactaatgagtaact 11375819  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 11385512 - 11385585
Alignment:
Q  177 atattaataagataaaatatatatagtgcttgaaacatgcaagtccaagcagtgcttcaatttgttagtaatga 250  Q
    |||||||||||||||||||||| ||||| |||||||||| |||||||||| |||||||||||| ||| ||||||    
T  11385512 atattaataagataaaatatatgtagtgtttgaaacatgtaagtccaagcggtgcttcaattttttactaatga 11385585  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 11362713 - 11362775
Alignment:
Q  188 ataaaatatatatagtgcttgaaacatgcaagtccaagcagtgcttcaatttgttagtaatga 250  Q
    ||||||||||| ||||| |||||||||| |||||||||| |||||||||||||||| ||||||    
T  11362713 ataaaatatatgtagtgtttgaaacatgtaagtccaagcggtgcttcaatttgttactaatga 11362775  T

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Target: scaffold1173 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1173
Description:

Target: scaffold1173; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 2358 - 2432
Alignment:
Q  176 tatattaataagataaaatatatatagtgcttgaaacatgcaagtccaagcagtgcttcaatttgttagtaatga 250  Q
    ||||||||||||||||||||||| ||||| |||||||||| |||||||||| |||||||||||||||| ||||||    
T  2358 tatattaataagataaaatatatgtagtgtttgaaacatgtaagtccaagcggtgcttcaatttgttactaatga 2432  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 256
Target Start/End: Complemental strand, 17186663 - 17186595
Alignment:
Q  188 ataaaatatatatagtgcttgaaacatgcaagtccaagcagtgcttcaatttgttagtaatgactaact 256  Q
    ||||||||||| ||||| |||||||||| |||||||||| |||||||||||||||| |||||| |||||    
T  17186663 ataaaatatatgtagtgtttgaaacatgtaagtccaagcggtgcttcaatttgttactaatgagtaact 17186595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 17192228 - 17192154
Alignment:
Q  176 tatattaataagataaaatatatatagtgcttgaaacatgcaagtccaagcagtgcttcaatttgttagtaatgac 251  Q
    |||||||||||||| |||||||| || ||||||||||||| |||  |||| |||| |||||||||||| |||||||    
T  17192228 tatattaataagattaaatatatgtactgcttgaaacatgtaag-acaagtagtgattcaatttgttactaatgac 17192154  T

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