View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20777_low_21 (Length: 236)
Name: NF20777_low_21
Description: NF20777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20777_low_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 234
Target Start/End: Original strand, 8793985 - 8794205
Alignment:
| Q |
15 |
attttattcatttattt-actaaatcttattttggcttcccttgacagaagagcagtagttatctcacattcagaaaggattggaaaaacccaaattcga |
113 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8793985 |
attttattcatttattttaataaatcttattttggcttcccttgacagaggagcagtagttatctcacattcagaaaggattgggaaaacccaaattcga |
8794084 |
T |
|
| Q |
114 |
ttcccaaatgtgtgtcttctcatctgaaaagatgtgaaattagacactacgaaggccggaatggtgatcttcaatttgcaagatatattttgcagaatgc |
213 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8794085 |
ttcccaaatgtgtgtcttctcgtctgaaaagatgtgaaattagacactacgaaggccggaatggtgatcttcaatttgcaagatatattttgcagaatgc |
8794184 |
T |
|
| Q |
214 |
aagatttctacaggtcatgaa |
234 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
8794185 |
aagatttctacaggtcatgaa |
8794205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 86 - 233
Target Start/End: Original strand, 22621427 - 22621574
Alignment:
| Q |
86 |
agaaaggattggaaaaacccaaattcgattcccaaatgtgtgtcttctcatctgaaaagatgtgaaattagacactacgaaggccggaatggtgatcttc |
185 |
Q |
| |
|
||||| |||||| ||| ||||||||||||||| ||||||| |||||||| || || | ||| ||||| | |||| ||||| |||| |||||| ||| |
|
|
| T |
22621427 |
agaaaagattgggaaagcccaaattcgattcctgaatgtgtttcttctcacctcaagacatgcacaattataaactatgaaggttggaaaggtgatattc |
22621526 |
T |
|
| Q |
186 |
aatttgcaagatatattttgcagaatgcaagatttctacaggtcatga |
233 |
Q |
| |
|
||||| ||||||| |||||| |||||||||||||||||||||| |||| |
|
|
| T |
22621527 |
aattttcaagatacattttgaagaatgcaagatttctacaggttatga |
22621574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 20112218 - 20112273
Alignment:
| Q |
178 |
tgatcttcaatttgcaagatatattttgcagaatgcaagatttctacaggtcatga |
233 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
20112218 |
tgattttcaatttgcaacatatattttgcagaatgcaagacttctacaggttatga |
20112273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 213
Target Start/End: Complemental strand, 3254944 - 3254909
Alignment:
| Q |
178 |
tgatcttcaatttgcaagatatattttgcagaatgc |
213 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3254944 |
tgatcttcaatttgcaaaatatattttgcagaatgc |
3254909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 7872297 - 7872333
Alignment:
| Q |
178 |
tgatcttcaatttgcaagatatattttgcagaatgca |
214 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
7872297 |
tgatcttcgatttgcaacatatattttgcagaatgca |
7872333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 37996650 - 37996612
Alignment:
| Q |
178 |
tgatcttcaatttgcaagatatattttgcagaatgcaag |
216 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
37996650 |
tgatcttcgatttgcaagatatattttgcataatgcaag |
37996612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University