View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20777_low_5 (Length: 601)

Name: NF20777_low_5
Description: NF20777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20777_low_5
NF20777_low_5
[»] chr4 (16 HSPs)
chr4 (28-211)||(19743705-19743888)
chr4 (28-211)||(19796200-19796383)
chr4 (414-578)||(19743322-19743486)
chr4 (414-578)||(19796602-19796766)
chr4 (414-576)||(19672204-19672366)
chr4 (414-576)||(19540280-19540442)
chr4 (216-284)||(52012880-52012948)
chr4 (211-284)||(9799359-9799432)
chr4 (145-210)||(19814718-19814787)
chr4 (216-284)||(46720218-46720286)
chr4 (279-342)||(19743558-19743621)
chr4 (279-342)||(19796467-19796530)
chr4 (31-101)||(19814636-19814702)
chr4 (243-284)||(47943261-47943302)
chr4 (31-79)||(19673477-19673525)
chr4 (241-281)||(53592952-53592992)
[»] chr6 (4 HSPs)
chr6 (414-576)||(27776963-27777125)
chr6 (218-284)||(34245669-34245735)
chr6 (216-250)||(17330517-17330551)
chr6 (219-272)||(11113665-11113718)
[»] chr5 (8 HSPs)
chr5 (211-284)||(38010610-38010683)
chr5 (210-284)||(29990064-29990138)
chr5 (211-284)||(13478041-13478114)
chr5 (229-284)||(13086855-13086910)
chr5 (216-284)||(13421011-13421079)
chr5 (218-276)||(10292981-10293039)
chr5 (218-284)||(13015483-13015549)
chr5 (216-256)||(42331071-42331111)
[»] chr3 (4 HSPs)
chr3 (211-284)||(47186277-47186350)
chr3 (216-284)||(42664775-42664843)
chr3 (217-284)||(31187072-31187139)
chr3 (216-284)||(34029292-34029360)
[»] chr1 (3 HSPs)
chr1 (216-284)||(8809641-8809709)
chr1 (211-284)||(35998354-35998427)
chr1 (219-276)||(35534512-35534569)
[»] chr2 (2 HSPs)
chr2 (216-284)||(3668011-3668079)
chr2 (227-284)||(10163584-10163641)


Alignment Details
Target: chr4 (Bit Score: 159; Significance: 2e-84; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 28 - 211
Target Start/End: Complemental strand, 19743888 - 19743705
Alignment:
Q  28 atatatcaatgatttttgcacagacggctaattccattattgtcatatcatatatagtactatttcacaaaatatgtacgtagagatatctaaacttaat 127  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19743888 atatatcaatgatttttgcacagacggttaattccattattgtcatatcatatatagtactatttcacaaaatatgtacgtagagatatctaaacttaat 19743789  T
Q  128 tagattannnnnnnatcaaacttaattagatatattatgattggacatatgcggaaaaagcataccaatacaatatgataaaac 211  Q
    |||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19743788 tagattatttttttatcaaacttaattagatatattatgattggacatatgcggaaaaagcataccaatacaatatgataaaac 19743705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 28 - 211
Target Start/End: Original strand, 19796200 - 19796383
Alignment:
Q  28 atatatcaatgatttttgcacagacggctaattccattattgtcatatcatatatagtactatttcacaaaatatgtacgtagagatatctaaacttaat 127  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19796200 atatatcaatgatttttgcacagacggttaattccattattgtcatatcatatatagtactatttcacaaaatatgtacgtagagatatctaaacttaat 19796299  T
Q  128 tagattannnnnnnatcaaacttaattagatatattatgattggacatatgcggaaaaagcataccaatacaatatgataaaac 211  Q
    |||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19796300 tagattatttttttatcaaacttaattagatatattatgattggacatatgcggaaaaagcataccaatacaatatgataaaac 19796383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 414 - 578
Target Start/End: Complemental strand, 19743486 - 19743322
Alignment:
Q  414 aggtacattcaaactcatatgccttagttgtgagcacagaaaacatcaacagtggatattacttaggaaacaacagatcaatgcttgtttcaaattgtct 513  Q
    ||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19743486 aggtacatcaaaactcatatgccttagttgtgagcacagaaaacaccaacagtggatattacttaggaaacaacagatcaatgcttgtttcaaattgtct 19743387  T
Q  514 ctttcgtgtaggtggtgcagcaatcttactctcaaacatttcttcaaattctcaacgttcaaagt 578  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19743386 ctttcgtgtaggtggtgcagcaatcttactctcaaacatttcttcagattctcaacgttcaaagt 19743322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 414 - 578
Target Start/End: Original strand, 19796602 - 19796766
Alignment:
Q  414 aggtacattcaaactcatatgccttagttgtgagcacagaaaacatcaacagtggatattacttaggaaacaacagatcaatgcttgtttcaaattgtct 513  Q
    ||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19796602 aggtacatcaaaactcatatgccttagttgtgagcacagaaaacaccaacagtggatattacttaggaaacaacagatcaatgcttgtttcaaattgtct 19796701  T
Q  514 ctttcgtgtaggtggtgcagcaatcttactctcaaacatttcttcaaattctcaacgttcaaagt 578  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19796702 ctttcgtgtaggtggtgcagcaatcttactctcaaacatttcttcagattctcaacgttcaaagt 19796766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 414 - 576
Target Start/End: Complemental strand, 19672366 - 19672204
Alignment:
Q  414 aggtacattcaaactcatatgccttagttgtgagcacagaaaacatcaacagtggatattacttaggaaacaacagatcaatgcttgtttcaaattgtct 513  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19672366 aggtacatgcaaactcatatgccttaattgtgagcacagaaaacatcaacagtggatattacttaggaaacaacagatcaatgcttgtttcaaattgtct 19672267  T
Q  514 ctttcgtgtaggtggtgcagcaatcttactctcaaacatttcttcaaattctcaacgttcaaa 576  Q
    ||||||||||||||||||||| ||||||||||||||||||||  |  ||||||| ||||||||    
T  19672266 ctttcgtgtaggtggtgcagccatcttactctcaaacatttccaccgattctcaccgttcaaa 19672204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 414 - 576
Target Start/End: Complemental strand, 19540442 - 19540280
Alignment:
Q  414 aggtacattcaaactcatatgccttagttgtgagcacagaaaacatcaacagtggatattacttaggaaacaacagatcaatgcttgtttcaaattgtct 513  Q
    |||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19540442 aggtacatccaaactcatatgccttaattgtgagcatagaaaacatcaacagtggatattacttaggaaacaacagatcaatgcttgtttcaaattgtct 19540343  T
Q  514 ctttcgtgtaggtggtgcagcaatcttactctcaaacatttcttcaaattctcaacgttcaaa 576  Q
    ||||||||||||||||||||| ||||||||||||||||||||  |  ||||||| ||||||||    
T  19540342 ctttcgtgtaggtggtgcagccatcttactctcaaacatttccactgattctcaccgttcaaa 19540280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 52012948 - 52012880
Alignment:
Q  216 agcacttgtgtaccattatgttatataacattagctaattaaggtgtgccatgtggcacacattttaaa 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  52012948 agcacttgtgtaccattatgttatataacattagctaattaaggtgtgacatgtggcacacactttaaa 52012880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 211 - 284
Target Start/End: Original strand, 9799359 - 9799432
Alignment:
Q  211 cggacagcacttgtgtaccattatgttatataacattagctaattaaggtgtgccatgtggcacacattttaaa 284  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||    
T  9799359 cggatagcacttgtgtaccattatgttatataacattagctaattaaggtgtgacatgtgacacacactttaaa 9799432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 19814718 - 19814787
Alignment:
Q  145 aaacttaattagatatattatgattggacatatgcggaaaaag----cataccaatacaatatgataaaa 210  Q
    |||||||||||||||||||||||||||| |||||||||||||     |||||||||||||||||||||||    
T  19814718 aaacttaattagatatattatgattggatatatgcggaaaaaaaaaacataccaatacaatatgataaaa 19814787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 46720286 - 46720218
Alignment:
Q  216 agcacttgtgtaccattatgttatataacattagctaattaaggtgtgccatgtggcacacattttaaa 284  Q
    ||||||| | ||||||||||||||||||||||||  |||||||||||| ||||||||||||| ||||||    
T  46720286 agcacttctttaccattatgttatataacattagtcaattaaggtgtgtcatgtggcacacactttaaa 46720218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 19743621 - 19743558
Alignment:
Q  279 tttaaagttatgatttgtagaaactggaaaatgtaaaaaatcttgacataactttctctctcat 342  Q
    |||| ||||||||||||||||||||  ||||||||||||||||||| |||| ||||||||||||    
T  19743621 tttatagttatgatttgtagaaactaaaaaatgtaaaaaatcttgatataattttctctctcat 19743558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 19796467 - 19796530
Alignment:
Q  279 tttaaagttatgatttgtagaaactggaaaatgtaaaaaatcttgacataactttctctctcat 342  Q
    |||| ||||||||||||||||||||  ||||||||||||||||||| |||| ||||||||||||    
T  19796467 tttatagttatgatttgtagaaactaaaaaatgtaaaaaatcttgatataattttctctctcat 19796530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 19814636 - 19814702
Alignment:
Q  31 tatcaatgatttttgcacagacggctaattccattattgtcatatcatatatagtactatttcacaaaata 101  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||    ||||||| |||||||||||||    
T  19814636 tatcaataatttttgcacagacggctaattccagtattgtcatatc----atagtacaatttcacaaaata 19814702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 47943302 - 47943261
Alignment:
Q  243 acattagctaattaaggtgtgccatgtggcacacattttaaa 284  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  47943302 acattagctaattaaggtgtgacatgtggcacacattttaaa 47943261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 19673525 - 19673477
Alignment:
Q  31 tatcaatgatttttgcacagacggctaattccattattgtcatatcata 79  Q
    ||||||| ||||||||| |||| ||||||||||||||||||||||||||    
T  19673525 tatcaataatttttgcagagacagctaattccattattgtcatatcata 19673477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 53592952 - 53592992
Alignment:
Q  241 taacattagctaattaaggtgtgccatgtggcacacatttt 281  Q
    ||||||| |||||||| ||||||||||||||||||| ||||    
T  53592952 taacattggctaattagggtgtgccatgtggcacacctttt 53592992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 119; Significance: 2e-60; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 414 - 576
Target Start/End: Complemental strand, 27777125 - 27776963
Alignment:
Q  414 aggtacattcaaactcatatgccttagttgtgagcacagaaaacatcaacagtggatattacttaggaaacaacagatcaatgcttgtttcaaattgtct 513  Q
    |||||||| ||||||||||||| ||||| |||||||||||||||||||| |||||||  ||||||||||||| |||||||||||||||||||||||||||    
T  27777125 aggtacatccaaactcatatgcattagtagtgagcacagaaaacatcaatagtggatggtacttaggaaacagcagatcaatgcttgtttcaaattgtct 27777026  T
Q  514 ctttcgtgtaggtggtgcagcaatcttactctcaaacatttcttcaaattctcaacgttcaaa 576  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||| | ||||||||    
T  27777025 ctttcgtgtaggtggtgcagcaattttactctcaaacatttcttcagattctaaccgttcaaa 27776963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 218 - 284
Target Start/End: Complemental strand, 34245735 - 34245669
Alignment:
Q  218 cacttgtgtaccattatgttatataacattagctaattaaggtgtgccatgtggcacacattttaaa 284  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||| ||||||    
T  34245735 cacttgtgtaccattatattatataacattagccaattaaggtgtgtcatgtggcacacactttaaa 34245669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 17330517 - 17330551
Alignment:
Q  216 agcacttgtgtaccattatgttatataacattagc 250  Q
    |||||||||||||||||||||||||||| ||||||    
T  17330517 agcacttgtgtaccattatgttatataatattagc 17330551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 272
Target Start/End: Complemental strand, 11113718 - 11113665
Alignment:
Q  219 acttgtgtaccattatgttatataacattagctaattaaggtgtgccatgtggc 272  Q
    |||| |||||||| ||| ||||||||||| |  |||||||||||||||||||||    
T  11113718 acttatgtaccataatggtatataacattggtcaattaaggtgtgccatgtggc 11113665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 211 - 284
Target Start/End: Original strand, 38010610 - 38010683
Alignment:
Q  211 cggacagcacttgtgtaccattatgttatataacattagctaattaaggtgtgccatgtggcacacattttaaa 284  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  38010610 cggatagcacttgtgtaccattatgttatataacattagccaattaaggtgtgccatgtggcacacactttaaa 38010683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 29990138 - 29990064
Alignment:
Q  210 acggacagcacttgtgtaccattatgttatataacattagctaattaaggtgtgccatgtggcacacattttaaa 284  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||    
T  29990138 acggatagcacttgtgtaccattatgttatataacattagccaattaaggtgtgacatgtggcacacactttaaa 29990064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 211 - 284
Target Start/End: Original strand, 13478041 - 13478114
Alignment:
Q  211 cggacagcacttgtgtaccattatgttatataacattagctaattaaggtgtgccatgtggcacacattttaaa 284  Q
    |||| ||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  13478041 cggatagcacatgtgtacgattatgttatataacattagctaattaaggtgtgacatgtggcacacactttaaa 13478114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 13086910 - 13086855
Alignment:
Q  229 cattatgttatataacattagctaattaaggtgtgccatgtggcacacattttaaa 284  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  13086910 cattatgttatataacattagctaattaaggtgtgacatgtggcacacactttaaa 13086855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 13421011 - 13421079
Alignment:
Q  216 agcacttgtgtaccattatgttatataacattagctaattaaggtgtgccatgtggcacacattttaaa 284  Q
    ||||||||||||||||||||||||||||||||||  || ||||||||| ||||||||| ||| ||||||    
T  13421011 agcacttgtgtaccattatgttatataacattagtcaagtaaggtgtgtcatgtggcatacactttaaa 13421079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 10293039 - 10292981
Alignment:
Q  218 cacttgtgtaccattatgttatataacattagctaattaaggtgtgccatgtggcacac 276  Q
    |||||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||    
T  10293039 cacttgtgtaccataatgttatataacattggccaattaaggtgtgccacgtggcacac 10292981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 218 - 284
Target Start/End: Complemental strand, 13015549 - 13015483
Alignment:
Q  218 cacttgtgtaccattatgttatataacattagctaattaaggtgtgccatgtggcacacattttaaa 284  Q
    |||||| ||| |||||||||||||||||||||| ||||||| |||| ||||||||||| | ||||||    
T  13015549 cacttgcgtatcattatgttatataacattagccaattaagatgtgacatgtggcacatactttaaa 13015483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 42331071 - 42331111
Alignment:
Q  216 agcacttgtgtaccattatgttatataacattagctaatta 256  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  42331071 agcacttgtgtaccattatgttatataacattagccaatta 42331111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 211 - 284
Target Start/End: Complemental strand, 47186350 - 47186277
Alignment:
Q  211 cggacagcacttgtgtaccattatgttatataacattagctaattaaggtgtgccatgtggcacacattttaaa 284  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  47186350 cggatagcacttgtgtaccattatgttatataacattagccaattaaggtgtgccatgtggcacacactttaaa 47186277  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 42664843 - 42664775
Alignment:
Q  216 agcacttgtgtaccattatgttatataacattagctaattaaggtgtgccatgtggcacacattttaaa 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  42664843 agcacttgtgtaccattatgttatataacattagctaattaaggtgtgacatgtggcacacactttaaa 42664775  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 31187072 - 31187139
Alignment:
Q  217 gcacttgtgtaccattatgttatataacattagctaattaaggtgtgccatgtggcacacattttaaa 284  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||    
T  31187072 gcacttgtgtaccattatgttatataacattagccaattaaggtgtgacatgtggcacacactttaaa 31187139  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 34029292 - 34029360
Alignment:
Q  216 agcacttgtgtaccattatgttatataacattagctaattaaggtgtgccatgtggcacacattttaaa 284  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||  ||||| |||||| ||||||    
T  34029292 agcacttgtgtaccattatgttatataacattagccaattaaggtgtgatatgtgacacacactttaaa 34029360  T

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Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 8809641 - 8809709
Alignment:
Q  216 agcacttgtgtaccattatgttatataacattagctaattaaggtgtgccatgtggcacacattttaaa 284  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||    
T  8809641 agcacttgtgtaccattatgttatataacattagccaattaaggtgtgacatgtggcacacactttaaa 8809709  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 211 - 284
Target Start/End: Complemental strand, 35998427 - 35998354
Alignment:
Q  211 cggacagcacttgtgtaccattatgttatataacattagctaattaaggtgtgccatgtggcacacattttaaa 284  Q
    |||| ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||    
T  35998427 cggatagcacctgtgtaccattatgttatataacattagccaattaagatgtgccatgtggcacacactttaaa 35998354  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 35534569 - 35534512
Alignment:
Q  219 acttgtgtaccattatgttatataacattagctaattaaggtgtgccatgtggcacac 276  Q
    ||||||| ||||| ||||||||||| ||| || |||||||||||| ||||||||||||    
T  35534569 acttgtgaaccataatgttatataatattggccaattaaggtgtgtcatgtggcacac 35534512  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 3668011 - 3668079
Alignment:
Q  216 agcacttgtgtaccattatgttatataacattagctaattaaggtgtgccatgtggcacacattttaaa 284  Q
    ||||||||||||||||||| |||||||| |||||| ||||||| ||||||||||||||| || ||||||    
T  3668011 agcacttgtgtaccattatattatataatattagccaattaagatgtgccatgtggcactcactttaaa 3668079  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 10163641 - 10163584
Alignment:
Q  227 accattatgttatataacattagctaattaaggtgtgccatgtggcacacattttaaa 284  Q
    |||||||||||||||||||||||  ||||||||| |||||||| ||||| | ||||||    
T  10163641 accattatgttatataacattagtcaattaaggtatgccatgtagcacatactttaaa 10163584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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