View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20777_low_8 (Length: 451)
Name: NF20777_low_8
Description: NF20777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20777_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 4537442 - 4537878
Alignment:
| Q |
1 |
ttgattattaagaaccaaaatttattataacttttaatctcgattttattaaattataagtaattttgatatggattcaagaaattacgctatgttatat |
100 |
Q |
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| T |
4537442 |
ttgattattaagaatcaaaatttattataacttttaatctcgattttattaaattataagttattttgatatggattcaagaaattacgttatgttataa |
4537541 |
T |
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| Q |
101 |
atcaaacttgttatatgacta-aaacattcatacataaattcatttcattctcaaactcaactttaactatcaattttacaaaacagagtttacaaaatt |
199 |
Q |
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| T |
4537542 |
atcaaacttgttatatgactgcaaacattcatacataaattcatttcattctcaaactcaactttaactatcaattttacaaaacagagtttacaaaatt |
4537641 |
T |
|
| Q |
200 |
acgattaacaaatattcgtccaataaacactaaatttcttttactcaatcaccaaaatctataaactcgggtacttcccatcctatgcatcttctcactc |
299 |
Q |
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| T |
4537642 |
acgattaacaaatattcgtccaataaacactaaatttcttttactcaatcaccaaaatctatcaactcaggtacttcccatcctatgcatcttctcactc |
4537741 |
T |
|
| Q |
300 |
atttgttaagaaaggaaaacaattaaaagaaaggaaaaatcggagaattggttcaatgaaccattattttcatcgtaacttgtaatag-agtaattacat |
398 |
Q |
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| T |
4537742 |
atttgttaagaaaggaaaacactgaaaagaaaggaaaaataagagaattggtccaatgaaccattattttcatcgtaacttgcaatagaagtaattacaa |
4537841 |
T |
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| Q |
399 |
atatttatagtatttcagtgatagatcggcataaact |
435 |
Q |
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| T |
4537842 |
gtatttattgtatttcagtgatagatcggcataaact |
4537878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 33648774 - 33648724
Alignment:
| Q |
169 |
atcaattttacaaaacagagtttacaaaattacgattaacaaatattcgtc |
219 |
Q |
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| T |
33648774 |
atcaattttacaaaacagaatttacaaaatcacgattaacaaatgttcgtc |
33648724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 343 - 435
Target Start/End: Complemental strand, 29997769 - 29997677
Alignment:
| Q |
343 |
agaattggttcaatgaaccattattttcatcgtaacttgtaataga-gtaattacatatatttatagtatttcagtgatagatcggcataaact |
435 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||| | |||||||| || |||| |||||||||||||||||| ||||||||| |
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| T |
29997769 |
agaattggttcaatgaaccattattt-cacattaacttgtaatagaagcaattacatgtacttatggtatttcagtgatagatcagcataaact |
29997677 |
T |
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