View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20777_low_9 (Length: 377)
Name: NF20777_low_9
Description: NF20777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20777_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 29015700 - 29015354
Alignment:
| Q |
19 |
atcatcttcatttctaaccctcttcaagaccttcgagcaaattgcttcgatacatctatttgtaattgacaattcctctgaccataaagacaatgctttt |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29015700 |
atcatcttcatttctaaccctctttaagaccttcgagcaaattgcttcgatgcatctatttgtaattgacaattcctctgaccataaagacaatgctttt |
29015601 |
T |
|
| Q |
119 |
gtggtttgtagtgtcacaactgaatctttccaaccgcgaagtatgcatgaattgaagaaaacttcaagcttgtaaatcaagttacccttttctgcatctt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29015600 |
gtggtttgtagtgtcacaactgaatctttccaaccgcgaagtatgcatgaattgaaaaaaacttcaagcttgtaaatcaagttacccttttctgcatctt |
29015501 |
T |
|
| Q |
219 |
ctgtcatttgtaaatattccgcggcacatcttgtggatacaatgttgtaagcacttagagtgattgtgattccatagcagaattttgcgcagagttcaaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29015500 |
ctgtcatttgtaaatattccgcggcacatcttgtggatacaatgttgtaagcacttagagtgattgtgattccatagcagaattttgcgcagagttcaaa |
29015401 |
T |
|
| Q |
319 |
tgcttcttctccgccaggaaaatcggggagttgtactatttgatgat |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29015400 |
tgcttcttctccgccaggaaaatcggggagttgtactatttgatgat |
29015354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 146 - 366
Target Start/End: Complemental strand, 14129086 - 14128866
Alignment:
| Q |
146 |
ttccaaccgcgaagtatgcatgaattgaagaaaacttcaagcttgtaaatcaagttacccttttctgcatcttctgtcatttgtaaatattccgcggcac |
245 |
Q |
| |
|
|||||||| |||| ||||| ||||| |||||||| |||||||||| ||||||||| || ||||| | ||||| |||||||| | |||||| || |||| |
|
|
| T |
14129086 |
ttccaaccatgaaggatgcaagaattaaagaaaacctcaagcttgtgaatcaagtttcctttttcaacttcttcagtcatttggagatattcagcagcac |
14128987 |
T |
|
| Q |
246 |
atcttgtggatacaatgttgtaagcacttagagtgattgtgattccatagcagaattttgcgcagagttcaaatgcttcttctccgccaggaaaatcggg |
345 |
Q |
| |
|
|||||| | |||||||||||||| ||||| ||| ||| ||||||||||||||| || || || | ||||||||||| |||| || |||||||| || |
|
|
| T |
14128986 |
atcttgcagctacaatgttgtaaggacttaaagtaatttggattccatagcagaacttagcacacaactcaaatgcttccactccacccggaaaatcagg |
14128887 |
T |
|
| Q |
346 |
gagttgtactatttgatgatg |
366 |
Q |
| |
|
||||| |||||||| ||||| |
|
|
| T |
14128886 |
aagttgaactatttggtgatg |
14128866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University