View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20778_high_4 (Length: 225)
Name: NF20778_high_4
Description: NF20778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20778_high_4 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 33116706 - 33116923
Alignment:
| Q |
8 |
cacagatcatggtatacacaaggatgtcctagcaaattgggttggcttgcactgattggattggctctctatatactgttcttttcacctggaatgggga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33116706 |
cacagatcatggtatacacaaggatgtcctagcaaattgggttggcttgcactgattggattggctctctatatactgttcttttcacctggaatgggga |
33116805 |
T |
|
| Q |
108 |
ctgttccatgggtcataaactctgagatttaccctttaaggtatagaggagtctgtggaggaatggcttcaacaagtgtttggatctcaaaccttattgt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33116806 |
ctgttccatgggtcataaactctgagatttaccctttaaggtatagaggagtctgtggaggaatggcttcaacaagtgtttggatctcaaaccttattgt |
33116905 |
T |
|
| Q |
208 |
ttctcaatcctttttatc |
225 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
33116906 |
ttctcaatcctttttatc |
33116923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 86 - 225
Target Start/End: Original strand, 33119996 - 33120135
Alignment:
| Q |
86 |
ttcttttcacctggaatggggactgttccatgggtcataaactctgagatttaccctttaaggtatagaggagtctgtggaggaatggcttcaacaagtg |
185 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||| || |||||||| || |||||||||||||||||||| | ||||||||||| || ||||||| | |
|
|
| T |
33119996 |
ttcttttcaccaggaatgggaacggttccatgggttatcaactctgaaatacaccctttaaggtatagaggaatatgtggaggaatagcatcaacaacag |
33120095 |
T |
|
| Q |
186 |
tttggatctcaaaccttattgtttctcaatcctttttatc |
225 |
Q |
| |
|
| ||| |||| ||||| ||||||||||||||||||||||| |
|
|
| T |
33120096 |
tgtgggtctctaacctcattgtttctcaatcctttttatc |
33120135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 216
Target Start/End: Complemental strand, 21492014 - 21491884
Alignment:
| Q |
86 |
ttcttttcacctggaatggggactgttccatgggtcataaactctgagatttaccctttaaggtatagaggagtctgtggaggaatggcttcaacaagtg |
185 |
Q |
| |
|
||||| || ||||||||||| || ||||||||||| | |||||||| || || || || |||||||||||| | ||||||||||| || ||||||| | |
|
|
| T |
21492014 |
ttcttctcgcctggaatgggaacagttccatgggttgttaactctgaaatctatccattgaggtatagaggaatatgtggaggaatagcatcaacaacag |
21491915 |
T |
|
| Q |
186 |
tttggatctcaaaccttattgtttctcaatc |
216 |
Q |
| |
|
| ||| | || |||||| ||||||||||||| |
|
|
| T |
21491914 |
tgtgggtttccaaccttgttgtttctcaatc |
21491884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 181
Target Start/End: Complemental strand, 21558574 - 21558479
Alignment:
| Q |
86 |
ttcttttcacctggaatggggactgttccatgggtcataaactctgagatttaccctttaaggtatagaggagtctgtggaggaatggcttcaaca |
181 |
Q |
| |
|
||||| ||||| |||||||| || ||||||||||| |||||||||| || || || ||||| || |||||| | ||||||||||| || |||||| |
|
|
| T |
21558574 |
ttcttctcaccaggaatgggaacagttccatgggttgtaaactctgaaatatatccattaagatacagaggaatatgtggaggaatcgcgtcaaca |
21558479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University