View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20778_low_3 (Length: 227)

Name: NF20778_low_3
Description: NF20778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20778_low_3
NF20778_low_3
[»] chr5 (13 HSPs)
chr5 (16-208)||(41366226-41366418)
chr5 (16-161)||(41328033-41328178)
chr5 (16-204)||(41332046-41332234)
chr5 (16-173)||(41316066-41316223)
chr5 (16-82)||(31188759-31188825)
chr5 (16-80)||(31224988-31225052)
chr5 (16-171)||(41324135-41324290)
chr5 (16-183)||(31178613-31178780)
chr5 (16-161)||(41322116-41322262)
chr5 (16-81)||(41336975-41337040)
chr5 (55-180)||(41286141-41286266)
chr5 (16-85)||(41430997-41431066)
chr5 (16-44)||(31185277-31185305)
[»] chr4 (1 HSPs)
chr4 (16-183)||(17249346-17249513)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 41366226 - 41366418
Alignment:
Q  16 agagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaatctcactcaaatgattctctcattaacaattgggatga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41366226 agagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcggttgttaatctcactcaaatgattctctcattaacaattgggatga 41366325  T
Q  116 cagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaatgaaggaaatatttaagctattgggaggattttctt 208  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41366326 cagcgcgggcagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaatgaaggaaatatttaagctattgggaggattttctt 41366418  T

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Target: chr5; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 41328033 - 41328178
Alignment:
Q  16 agagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaatctcactcaaatgattctctcattaacaattgggatga 115  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  | |||| ||||| | |||| |||||| |    
T  41328033 agagaagatgaggtgtcaaaccttgttaaatcaataactgcaagtgaaggatcagttgttaatctcactcggaagattttctcaatgacaaatgggataa 41328132  T
Q  116 cagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtt 161  Q
    |||||||| |||| ||||| |||| ||||| ||||||||| |||||    
T  41328133 cagcgcgggcagcttttgggaaaaggaatagacaccaagatgtgtt 41328178  T

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Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 41332046 - 41332234
Alignment:
Q  16 agagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaatctcactcaaatgattctctcattaacaattgggatga 115  Q
    |||||||| || ||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||  | |||| ||||| | |||| |||||| |    
T  41332046 agagaagatgaagtgacaaatcttgttaaatcaataactgcaagtgaaggatcggttgtaaatctcactcggaagattttctcaatgacaaatgggataa 41332145  T
Q  116 cagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaatgaaggaaatatttaagctattgggaggattt 204  Q
    |||||||| |||| ||||| |||| ||||| | ||||||| ||||| | |||||||||| || || ||||   |||||| |||||||||    
T  41332146 cagcgcgggcagcttttgggaaaaggaatagaaaccaagatgtgttcatatcagcaatggagaaagtattggtgctattaggaggattt 41332234  T

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Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 41316066 - 41316223
Alignment:
Q  16 agagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaatctcactcaaatgattctctcattaacaattgggatga 115  Q
    |||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | |||   |||  |||||| |    
T  41316066 agagaagatgaagtgacaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaatctcactcagaagattttgtcaacgacatatgggataa 41316165  T
Q  116 cagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaat 173  Q
    |||||||  | || ||||| |||| ||  ||||||||||||||||||| |||||||||    
T  41316166 cagcgcgagcggcttttgggaaaaggagcaaacaccaagaagtgtttagatcagcaat 41316223  T

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Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 31188825 - 31188759
Alignment:
Q  16 agagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaatctca 82  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  31188825 agagaagaagaggtgtcaaatcttgttaaatcaatatctgcaagtgaaggatcaattgttaatctca 31188759  T

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Target: chr5; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 31224988 - 31225052
Alignment:
Q  16 agagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaatct 80  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||    
T  31224988 agagaagaagaggtgtcaaatcttgttgaatcaatatctgcaagtgaaggatcaattgttaatct 31225052  T

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Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 171
Target Start/End: Original strand, 41324135 - 41324290
Alignment:
Q  16 agagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaatctcactcaaatgattctctcattaacaattgggatga 115  Q
    |||||||| || || |||||||||| || ||||||||||||||||||||||||| |||||||||||||||| | |||| ||||| | |||  |||||| |    
T  41324135 agagaagatgaagtatcaaatcttgctacatcaataactgcaagtgaaggatcaattgttaatctcactcataagattttctcaatgacatatgggataa 41324234  T
Q  116 cagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagca 171  Q
    || ||||| | || ||||| |||| ||  ||||||||  ||  |||||||||||||    
T  41324235 caacgcgggcggcttttggcaaaaggagcaaacaccagcaatcgtttaaatcagca 41324290  T

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Target: chr5; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 31178780 - 31178613
Alignment:
Q  16 agagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaatctcactcaaatgattctctcattaacaattgggatga 115  Q
    |||||| ||||||||||||||||| ||||||| ||| || ||||| ||||||||||||| ||||||| ||| | |||| || || | |||   | ||| |    
T  31178780 agagaataagaggtgtcaaatcttattaaatcgatatctacaagtaaaggatcagttgtaaatctcagtcataagattttcgcaatgacatcggcgataa 31178681  T
Q  116 cagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaatgaaggaaata 183  Q
    |  | ||  |||| ||||| |||| ||||||||||||| |||||||  |||||||||| |||||||||    
T  31178680 cgacacgagcagcgtttgggaaaaggaataaacaccaacaagtgttccaatcagcaataaaggaaata 31178613  T

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Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 41322116 - 41322262
Alignment:
Q  16 agagaagaagaggtgtcaaatcttgttaaatcaataac-tgcaagtgaaggatcagttgttaatctcactcaaatgattctctcattaacaattgggatg 114  Q
    |||||||| || ||| |||||||||||||||||||||| |  |||||||||||||||||||||||||| | | | |||| ||||| | |||  ||||||     
T  41322116 agagaagatgaagtgacaaatcttgttaaatcaataacttttaagtgaaggatcagttgttaatctcagtgagaagattttctcaatgacatatgggata 41322215  T
Q  115 acagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtt 161  Q
    |||||| || | |  ||||| |||| ||||| ||||||||| |||||    
T  41322216 acagcgagggcggtttttgggaaaaggaatagacaccaagatgtgtt 41322262  T

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Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 41336975 - 41337040
Alignment:
Q  16 agagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaatctc 81  Q
    |||||||||||||||||  ||||||||||||||||| |||||| |||||||||| | |||||||||    
T  41336975 agagaagaagaggtgtccgatcttgttaaatcaatatctgcaaatgaaggatcaatcgttaatctc 41337040  T

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Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 180
Target Start/End: Original strand, 41286141 - 41286266
Alignment:
Q  55 gcaagtgaaggatcagttgttaatctcactcaaatgattctctcattaacaattgggatgacagcgcggacagcatttggaaaaaagaataaacaccaag 154  Q
    |||||||||||||||||||||||||||||||| | |||| | |||  |||   |||||| || |||||  || | ||||| |||||||| | ||||||||    
T  41286141 gcaagtgaaggatcagttgttaatctcactcagaagattttgtcaacaacctatgggataacggcgcgtgcaacttttgggaaaaagaacatacaccaag 41286240  T
Q  155 aagtgtttaaatcagcaatgaaggaa 180  Q
    |||  || |||| ||||||| |||||    
T  41286241 aagcattcaaattagcaatggaggaa 41286266  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 41430997 - 41431066
Alignment:
Q  16 agagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaatctcactc 85  Q
    |||||||||||||| ||||| || |||||||| |||  | || ||||||||||| |||||||||||||||    
T  41430997 agagaagaagaggtttcaaaactagttaaatccatatgtacatgtgaaggatcaattgttaatctcactc 41431066  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 31185305 - 31185277
Alignment:
Q  16 agagaagaagaggtgtcaaatcttgttaa 44  Q
    |||||||||||||||||||||||||||||    
T  31185305 agagaagaagaggtgtcaaatcttgttaa 31185277  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 17249513 - 17249346
Alignment:
Q  16 agagaagaagaggtgtcaaatcttgttaaatcaataactgcaagtgaaggatcagttgttaatctcactcaaatgattctctcattaacaattgggatga 115  Q
    ||||||||||| |||| | |||||||||||||||||  | ||||||||||||  ||||||||||||||||| | ||||   || ||||||  ||||||      
T  17249513 agagaagaagaagtgttagatcttgttaaatcaatattttcaagtgaaggatgtgttgttaatctcactcagaagatttcttctttaacatatgggatag 17249414  T
Q  116 cagcgcggacagcatttggaaaaaagaataaacaccaagaagtgtttaaatcagcaatgaaggaaata 183  Q
      |||||  |||| || || |||| ||| ||||||||| ||||||| |||||||||||  ||||||||    
T  17249413 tggcgcgagcagctttcgggaaaaggaacaaacaccaacaagtgttcaaatcagcaatagaggaaata 17249346  T

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