View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20779_high_13 (Length: 329)

Name: NF20779_high_13
Description: NF20779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20779_high_13
NF20779_high_13
[»] chr7 (22 HSPs)
chr7 (13-236)||(9403393-9403602)
chr7 (13-236)||(37075858-37076067)
chr7 (13-235)||(34981592-34981800)
chr7 (16-236)||(40892032-40892238)
chr7 (13-108)||(3483075-3483170)
chr7 (16-236)||(12121334-12121540)
chr7 (22-236)||(586538-586738)
chr7 (111-236)||(24819526-24819651)
chr7 (16-180)||(21607986-21608136)
chr7 (114-236)||(36575650-36575772)
chr7 (110-237)||(20705759-20705886)
chr7 (110-237)||(20873803-20873930)
chr7 (16-95)||(24819445-24819524)
chr7 (114-177)||(31253050-31253113)
chr7 (16-95)||(36575777-36575856)
chr7 (16-86)||(27868658-27868728)
chr7 (16-81)||(22866157-22866222)
chr7 (16-68)||(18815815-18815867)
chr7 (120-228)||(27278440-27278548)
chr7 (188-236)||(27868806-27868854)
chr7 (16-108)||(31252966-31253058)
chr7 (16-108)||(47553037-47553129)
[»] chr4 (30 HSPs)
chr4 (16-236)||(6614302-6614508)
chr4 (13-235)||(15649336-15649544)
chr4 (16-236)||(18116650-18116857)
chr4 (20-236)||(23158418-23158620)
chr4 (16-236)||(36279471-36279677)
chr4 (16-226)||(51872433-51872629)
chr4 (238-309)||(8672120-8672191)
chr4 (126-236)||(22340423-22340533)
chr4 (110-230)||(8110746-8110866)
chr4 (126-236)||(29123707-29123816)
chr4 (20-236)||(17838802-17839004)
chr4 (16-76)||(4723310-4723370)
chr4 (25-108)||(50694136-50694219)
chr4 (16-79)||(29192726-29192789)
chr4 (121-235)||(24059482-24059596)
chr4 (25-102)||(4303590-4303667)
chr4 (25-102)||(15705948-15706025)
chr4 (20-108)||(3621321-3621409)
chr4 (20-105)||(29123823-29123908)
chr4 (16-81)||(34994474-34994539)
chr4 (20-108)||(12915543-12915631)
chr4 (16-108)||(17469506-17469598)
chr4 (16-68)||(24059391-24059443)
chr4 (25-81)||(36950958-36951014)
chr4 (110-177)||(12290620-12290687)
chr4 (126-236)||(4303470-4303580)
chr4 (126-236)||(15705828-15705938)
chr4 (20-102)||(22340331-22340413)
chr4 (111-168)||(12915620-12915677)
chr4 (120-168)||(25135116-25135164)
[»] chr2 (12 HSPs)
chr2 (13-236)||(23384588-23384797)
chr2 (13-236)||(27914869-27915078)
chr2 (13-236)||(21963153-21963362)
chr2 (16-236)||(32349622-32349828)
chr2 (111-236)||(30275719-30275843)
chr2 (111-236)||(38938301-38938426)
chr2 (16-108)||(22298660-22298752)
chr2 (16-108)||(33937157-33937249)
chr2 (16-71)||(30274477-30274532)
chr2 (121-235)||(20007337-20007451)
chr2 (20-80)||(38938224-38938284)
chr2 (16-81)||(1258208-1258273)
[»] chr3 (23 HSPs)
chr3 (13-236)||(53152353-53152562)
chr3 (13-236)||(17154075-17154284)
chr3 (20-236)||(23571889-23572091)
chr3 (13-177)||(32945636-32945786)
chr3 (16-236)||(3514432-3514638)
chr3 (16-236)||(9818808-9819014)
chr3 (16-108)||(8542253-8542345)
chr3 (111-236)||(42462549-42462674)
chr3 (110-230)||(48547382-48547502)
chr3 (27-228)||(30737247-30737434)
chr3 (16-108)||(9246777-9246869)
chr3 (16-74)||(10753811-10753869)
chr3 (13-63)||(44879740-44879790)
chr3 (16-81)||(39633241-39633306)
chr3 (20-81)||(42462472-42462533)
chr3 (126-236)||(23603107-23603217)
chr3 (16-101)||(16663724-16663809)
chr3 (111-236)||(42459560-42459685)
chr3 (111-158)||(8542334-8542381)
chr3 (16-81)||(52196035-52196100)
chr3 (20-92)||(48547306-48547378)
chr3 (20-102)||(23603015-23603097)
chr3 (25-102)||(8595014-8595091)
[»] chr5 (12 HSPs)
chr5 (13-236)||(10462405-10462614)
chr5 (13-236)||(5825237-5825446)
chr5 (13-232)||(6678848-6679053)
chr5 (110-228)||(11265853-11265971)
chr5 (110-230)||(27891526-27891646)
chr5 (16-108)||(38931517-38931609)
chr5 (16-108)||(31963054-31963146)
chr5 (25-81)||(29322550-29322606)
chr5 (16-69)||(8895132-8895185)
chr5 (20-81)||(29150057-29150118)
chr5 (25-81)||(11265782-11265838)
chr5 (20-92)||(27891450-27891522)
[»] chr8 (7 HSPs)
chr8 (13-235)||(2959859-2960067)
chr8 (16-236)||(26077994-26078200)
chr8 (20-236)||(31423483-31423685)
chr8 (111-227)||(26390518-26390634)
chr8 (111-227)||(29530003-29530118)
chr8 (25-108)||(26390623-26390706)
chr8 (20-69)||(29529926-29529975)
[»] chr1 (18 HSPs)
chr1 (16-236)||(41343076-41343282)
chr1 (114-236)||(27029784-27029906)
chr1 (114-236)||(10003763-10003885)
chr1 (110-230)||(5557095-5557215)
chr1 (16-108)||(48759800-48759892)
chr1 (27-108)||(37666112-37666193)
chr1 (111-177)||(44753748-44753814)
chr1 (16-104)||(44753807-44753895)
chr1 (16-95)||(27029700-27029779)
chr1 (20-102)||(49369519-49369601)
chr1 (16-68)||(40392461-40392513)
chr1 (20-91)||(5557019-5557090)
chr1 (144-235)||(26995826-26995917)
chr1 (118-220)||(45757519-45757621)
chr1 (20-69)||(45757435-45757484)
chr1 (143-236)||(49369628-49369721)
chr1 (16-68)||(26995713-26995765)
chr1 (183-235)||(40392606-40392658)
[»] scaffold0041 (1 HSPs)
scaffold0041 (16-236)||(74046-74252)
[»] chr6 (8 HSPs)
chr6 (16-225)||(18295675-18295870)
chr6 (111-228)||(667092-667209)
chr6 (110-230)||(28605161-28605281)
chr6 (111-236)||(2894066-2894191)
chr6 (16-81)||(5391926-5391991)
chr6 (20-101)||(17227680-17227761)
chr6 (16-108)||(9759885-9759977)
chr6 (22-70)||(2893991-2894039)
[»] scaffold0032 (1 HSPs)
scaffold0032 (20-228)||(58672-58866)


Alignment Details
Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 9403602 - 9403393
Alignment:
Q  13 aatatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  9403602 aatatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg---- 9403507  T
Q  113 aatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaa 212  Q
              ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||    
T  9403506 ----------ttacgatctttccaaatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatgctttgagaaacctccaagtgcacaa 9403417  T
Q  213 aactgatttgcatgtgaatataaa 236  Q
    ||||||||||||||||||||||||    
T  9403416 aactgatttgcatgtgaatataaa 9403393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 37076067 - 37075858
Alignment:
Q  13 aatatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||            
T  37076067 aatatgtagttagctttcaaccaccaaaacgtttggagtttaaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcct-------- 37075976  T
Q  113 aatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaa 212  Q
          ||||||||||||||| || ||||||||||||||||||||||||||||||||||| | || || ||||| ||||||||| ||| |||  ||||||    
T  37075975 ------cctgttacgatctttccaaatagtaaataagaccgaaatccaaataatagaaaaagtttgcacagaatgctttgagaatccttcaagtgcacaa 37075882  T
Q  213 aactgatttgcatgtgaatataaa 236  Q
    |||||||| |||||||||||||||    
T  37075881 aactgattagcatgtgaatataaa 37075858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 34981592 - 34981800
Alignment:
Q  13 aatatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaa 112  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||              |||    
T  34981592 aatatgtagttagctttcaaccaccaaaacgtttgaagtttgaccctttcaagaagaacttccatatgaacaatttcgttttg--------------aaa 34981677  T
Q  113 aatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaa 212  Q
    ||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||| | || || ||||| ||||||||| |||||||  ||||||    
T  34981678 aatcctcctgttacgatctttccaaatagaaaataagaccgaaatccaaataatagaaaaagtttgcatagaatgctttgagaatcctccaagtgcacaa 34981777  T
Q  213 aactgatttgcatgtgaatataa 235  Q
    |||||||| ||||||||||||||    
T  34981778 aactgattagcatgtgaatataa 34981800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 40892238 - 40892032
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaat 115  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||||||| ||||||||               
T  40892238 atgtagttagctttcaaccaccaaaacgtttgaagtttaaccctttcaagaagagcttccagatgatcaatttggttttggaaaatcct----------- 40892150  T
Q  116 cctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaac 215  Q
       |||||| |||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| ||||| |||||||||  |||  | ||| ||||||    
T  40892149 ---cctgttgcgatctttccatatagtaaataagaccgaaatccaaataatagtaaaagctttcatagaattctttgagaagtctcttagagcgcaaaac 40892053  T
Q  216 tgatttgcatgtgaatataaa 236  Q
    |||||  |||||| |||||||    
T  40892052 tgattatcatgtgtatataaa 40892032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 3483170 - 3483075
Alignment:
Q  13 aatatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||    
T  3483170 aatatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaaaaagaacttccaaatgaacaatttggttttggaaaatcctcctg 3483075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 12121334 - 12121540
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaat 115  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |||| | ||||||||||||||||               |||||    
T  12121334 atgtagttagctttcaaccaccaaaacgtttgaagtttgactctttcaagtagaacctccaaaagaacaatttggttttg--------------gaaaat 12121419  T
Q  116 cctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaac 215  Q
    ||||||||| |||||||| ||||||||| ||||| | || ||||||||||||| ||| ||||||| ||||| |||||||||||| || | ||| ||||||    
T  12121420 cctcctgttgcgatctttccatatagtatataaggctgagatccaaataatagtaaaagctttcatagaattctttgagaaaccgcctagagcgcaaaac 12121519  T
Q  216 tgatttgcatgtgaatataaa 236  Q
    ||||| ||||| | |||||||    
T  12121520 tgattagcatgagtatataaa 12121540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 586538 - 586738
Alignment:
Q  22 ttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcct 121  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||  | | ||||||||||||| || ||||| | |                 
T  586538 ttagctttcaaccaccaaaacgtttgaagtttaaccctttcaagaagaacttccaattaatcaatttggttttggaatatccttcgg------------- 586624  T
Q  122 gttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgattt 221  Q
     || |||||||| ||||||||||||||||||||||||||||||||||  || ||||||| | ||| ||||||||| ||||||| ||| |||||||||||     
T  586625 -tttcgatctttccatatagtaaataagaccgaaatccaaataatagtgaaagctttcatataattctttgagaagcctccaagagcgcaaaactgatta 586723  T
Q  222 gcatgtgaatataaa 236  Q
    ||||||| |||||||    
T  586724 gcatgtgtatataaa 586738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 111 - 236
Target Start/End: Original strand, 24819526 - 24819651
Alignment:
Q  111 aaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcac 210  Q
    |||||||||||||| ||| |||| ||||||||| ||||||||||||||||||| |||| ||| ||||||| ||||| |||||||||||| || ||||| |    
T  24819526 aaaatcctcctgttgcgaactttccatatagtatataagaccgaaatccaaatgatagtaaaagctttcatagaattctttgagaaaccacctaaagcgc 24819625  T
Q  211 aaaactgatttgcatgtgaatataaa 236  Q
    |||||||||| ||||| |||||||||    
T  24819626 aaaactgattagcatgagaatataaa 24819651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 16 - 180
Target Start/End: Original strand, 21607986 - 21608136
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaat 115  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||| |||| |||||| |||| ||||||||||||| |||||||||       |||    
T  21607986 atgtagttagctttcaaccaccaaaacgtttgaagtttaaccctttcaaaaagagcttccaaatgatcaatttggttttggaaaatcctc-------aat 21608078  T
Q  116 cctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttca 180  Q
           || ||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||    
T  21608079 -------ttgcgatcttttcatataataaataagaccgaaatccaaataatagtaaaagctttca 21608136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 114 - 236
Target Start/End: Complemental strand, 36575772 - 36575650
Alignment:
Q  114 atcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaa 213  Q
    ||||||||||| | |||||| || |||||| ||||||||||||||||||| |||| ||| ||||||| ||||| |||||||||||| || ||||| ||||    
T  36575772 atcctcctgttgcaatctttccaaatagtatataagaccgaaatccaaatgatagtaaaagctttcatagaattctttgagaaaccacctaaagcgcaaa 36575673  T
Q  214 actgatttgcatgtgaatataaa 236  Q
    ||||||| ||||| |||||||||    
T  36575672 actgattagcatgagaatataaa 36575650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 237
Target Start/End: Complemental strand, 20705886 - 20705759
Alignment:
Q  110 aaaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagca 209  Q
    |||||||||||| || |||||||| || |||   ||||||||||||||||||||||||| ||| |||  |  ||| | ||| ||||| |||||||  |||    
T  20705886 aaaaatcctcctatttcgatctttccaaataacgaataagaccgaaatccaaataatagtaaaagctgacgtagacttcttggagaaccctccaagtgca 20705787  T
Q  210 caaaactgatttgcatgtgaatataaag 237  Q
    ||||||||||  | ||||||| ||||||    
T  20705786 caaaactgatgagtatgtgaaaataaag 20705759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 237
Target Start/End: Complemental strand, 20873930 - 20873803
Alignment:
Q  110 aaaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagca 209  Q
    |||||||||||| || |||||||| || |||   ||||||||||||||||||||||||| ||| |||  |  ||| | ||| ||||| |||||||  |||    
T  20873930 aaaaatcctcctatttcgatctttccaaataacgaataagaccgaaatccaaataatagtaaaagctgacgtagacttcttggagaaccctccaagtgca 20873831  T
Q  210 caaaactgatttgcatgtgaatataaag 237  Q
    ||||||||||  | ||||||| ||||||    
T  20873830 caaaactgatgagtatgtgaaaataaag 20873803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 24819445 - 24819524
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttg 95  Q
    ||||| |||||||||||||||||| | ||||| |||||||| |||||||| ||||| |||| | || || ||||||||||    
T  24819445 atgtaattagctttcaaccaccaatatgtttgaagtttgactctttcaagtagaacctccaaaagagcactttggttttg 24819524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 31253050 - 31253113
Alignment:
Q  114 atcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctt 177  Q
    ||||||||||| |||||||| || |||||| ||||||||||||||||||| |||| ||| ||||    
T  31253050 atcctcctgttgcgatctttccaaatagtatataagaccgaaatccaaatgatagtaaaagctt 31253113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 36575856 - 36575777
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttg 95  Q
    ||||| |||||||||||||||||| | ||||| |||||||| |||||||| ||||| |||| | || || ||||||||||    
T  36575856 atgtaattagctttcaaccaccaatatgtttgaagtttgactctttcaagtagaacctccaaaagagcactttggttttg 36575777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 27868658 - 27868728
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaat 86  Q
    ||||| || ||||||||||||||| ||||||||| ||| | ||||||||||||| |||| |||||| ||||    
T  27868658 atgtaattcgctttcaaccaccaatacgtttggattttaatcctttcaagaagagcttctagatgatcaat 27868728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 22866222 - 22866157
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatga 81  Q
    ||||| || ||||||| ||||||||||||||| ||||| | ||||||||||||| |||| ||||||    
T  22866222 atgtaattcgctttcagccaccaaaacgtttgaagtttaatcctttcaagaagagcttcaagatga 22866157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 18815867 - 18815815
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaag 68  Q
    |||||||| ||||||||||||||| | ||||||||||| ||| ||||||||||    
T  18815867 atgtagttcgctttcaaccaccaatatgtttggagtttaaccttttcaagaag 18815815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 228
Target Start/End: Original strand, 27278440 - 27278548
Alignment:
Q  120 ctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgat 219  Q
    ||||| ||||||||  |||||  |||||||||| ||| ||| ||||||| ||| ||| |   ||||| | ||||||||||| ||| ||||||||||||||    
T  27278440 ctgttgcgatctttcaatataacaaataagaccaaaacccatataatagtaaaagctgttctagaattccttgagaaacctgcaagagcacaaaactgat 27278539  T
Q  220 ttgcatgtg 228  Q
    | |||||||    
T  27278540 tagcatgtg 27278548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 27868806 - 27868854
Alignment:
Q  188 ctttgagaaacctccaaaagcacaaaactgatttgcatgtgaatataaa 236  Q
    ||||||||||||||||||||||||||| ||||| ||||| |||| ||||    
T  27868806 ctttgagaaacctccaaaagcacaaaattgattagcatgagaatgtaaa 27868854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 31252966 - 31253058
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 108  Q
    ||||| |||||||||||||||||| | ||||| |||||||| |||||||  ||||| |||| | || |  |||||||||| || |||||||||    
T  31252966 atgtaattagctttcaaccaccaatatgtttgaagtttgactctttcaaatagaacctccaaaagagcgctttggttttggaatatcctcctg 31253058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 47553037 - 47553129
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 108  Q
    ||||| || ||||||| ||||||||||||||| ||||| | ||||||||| ||| | || |||||| |||  || || |||||||| ||||||    
T  47553037 atgtaattcgctttcagccaccaaaacgtttgaagtttaatcctttcaagcagagcgtcaagatgatcaaaatgattctgaaaaattctcctg 47553129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 6614508 - 6614302
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||           
T  6614508 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaaatcctcatg------- 6614416  T
Q  116 cctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaac 215  Q
           || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  6614415 -------ttgcgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagcacaaaac 6614323  T
Q  216 tgatttgcatgtgaatataaa 236  Q
    |||||||||||||||||||||    
T  6614322 tgatttgcatgtgaatataaa 6614302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 15649544 - 15649336
Alignment:
Q  13 aatatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaa 112  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||            
T  15649544 aatatgtagttagctttcaaccaccaaaacgtttgaagtttgaccctttcaagaagaacttccatatgaacaatttcgttttgaaaaatcct-------- 15649453  T
Q  113 aatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaa 212  Q
          ||||||||||||||| || |||| |||||||||||||||||||||||||||||| | || || ||||| ||||||||| |||||||  ||||||    
T  15649452 ------cctgttacgatctttccaaatagaaaataagaccgaaatccaaataatagaaaaagtttgcatagaatgctttgagaatcctccaagtgcacaa 15649359  T
Q  213 aactgatttgcatgtgaatataa 235  Q
    |||||||| ||||||||||||||    
T  15649358 aactgattagcatgtgaatataa 15649336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 18116857 - 18116650
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaat 115  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||| |||||||||||||||||            || |||| |    
T  18116857 atgtagttagctttcaaccaccaaaacgtttgaagtttgaccctttcaagtataacttccaaatgaacaatttggtttt------------tggaaaa-t 18116771  T
Q  116 cctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaac 215  Q
    |||||| || |||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| ||||||| ||| ||||||    
T  18116770 cctcctattgcgatctttccatatagtaaataagaccgaaatccaaataatagtaaatgctttcatagaattctttgagaagcctccaagagcgcaaaac 18116671  T
Q  216 tgatttgcatgtgaatataaa 236  Q
    ||||| |||| || |||||||    
T  18116670 tgattagcatttgtatataaa 18116650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 23158620 - 23158418
Alignment:
Q  20 agttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctc 119  Q
    |||||||||||||||||||||||||||| | |||||| |||||||| |||||||||| | |||||||||||||||| ||||||||||||               
T  23158620 agttagctttcaaccaccaaaacgtttgaaatttgactctttcaagtagaacttccaaaagaacaatttggttttggaaaatcctcctg----------- 23158532  T
Q  120 ctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgat 219  Q
       || |||||||||||||||||| |||||||||||||||||||||||| ||| ||||||| ||||| ||||||||||||||||| ||| ||||||||||    
T  23158531 ---ttgcgatcttttcatatagtatataagaccgaaatccaaataatagtaaaagctttcatagaattctttgagaaacctccaagagcgcaaaactgat 23158435  T
Q  220 ttgcatgtgaatataaa 236  Q
    | ||||| | |||||||    
T  23158434 tagcatgagtatataaa 23158418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 36279677 - 36279471
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaat 115  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||| | |||||||||||||||| ||||||||||||           
T  36279677 atgtagttagctttcaaccaccaaaacgtttgaagtttgactctttcaagtagaacttccaaaagaacaatttggttttggaaaatcctcctg------- 36279585  T
Q  116 cctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaac 215  Q
           || |||||||| ||||||||| |||||||||||||||||||||||| ||| ||||||| | ||| ||||||||||||||||| ||| ||||||    
T  36279584 -------ttgcgatctttccatatagtatataagaccgaaatccaaataatagtaaaagctttcatataattctttgagaaacctccaagagcgcaaaac 36279492  T
Q  216 tgatttgcatgtgaatataaa 236  Q
    ||||| ||||| | |||||||    
T  36279491 tgattagcatgagtatataaa 36279471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 51872433 - 51872629
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaat 115  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |||| | ||||||||||||||||               |||||    
T  51872433 atgtagttagctttcaaccaccaaaacgtttgaagtttgactctttcaagtagaacctccaaaagaacaatttggttttg--------------gaaaat 51872518  T
Q  116 cctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaac 215  Q
    ||||||||| |||| ||| || |||||| ||||| |||| ||||||||||||| ||| ||||||| ||||| ||||||||||||||| | | ||||||||    
T  51872519 cctcctgttgcgatttttccaaatagtatataaggccgatatccaaataatagtaaaagctttcatagaattctttgagaaacctcctagaccacaaaac 51872618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 238 - 309
Target Start/End: Original strand, 8672120 - 8672191
Alignment:
Q  238 aaactctaaataccattaacatgccagaaggtgcatcaatttaacataatattattcttcaaatagcaacta 309  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||    
T  8672120 aaactctaaataccattaacatgctagaaggtgcatcaatttaacataacattattcttcaaatagtaacta 8672191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 236
Target Start/End: Original strand, 22340423 - 22340533
Alignment:
Q  126 cgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgcat 225  Q
    |||||||| ||||||  |||||| ||| |||||||||||||||| || ||||||| ||||| |||||| |||||||||| ||||||||||||||| ||||    
T  22340423 cgatctttccatataacaaataaaaccaaaatccaaataatagacaaagctttcatagaattctttgaaaaacctccaagagcacaaaactgattagcat 22340522  T
Q  226 gtgaatataaa 236  Q
    | | |||||||    
T  22340523 gaggatataaa 22340533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 8110746 - 8110866
Alignment:
Q  110 aaaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagca 209  Q
    ||||||||||||||| || || || || |||  |||||||||||||||||| ||||||| ||| ||| ||  ||||| ||||||||| ||||||| ||||    
T  8110746 aaaaatcctcctgttgcggtccttccaaataacaaataagaccgaaatccatataatagtaaaagctgtcctagaattctttgagaaccctccaagagca 8110845  T
Q  210 caaaactgatttgcatgtgaa 230  Q
    ||||||||||| |||||||||    
T  8110846 caaaactgattagcatgtgaa 8110866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 29123816 - 29123707
Alignment:
Q  126 cgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgcat 225  Q
    |||||||| || |||  |||||| |||||||||||||||||||| || ||||||| ||||| |||||| |||||||||| ||||||||||||||| ||||    
T  29123816 cgatctttccaaataacaaataaaaccgaaatccaaataatagacaaagctttcatagaattctttga-aaacctccaagagcacaaaactgattagcat 29123718  T
Q  226 gtgaatataaa 236  Q
    | | |||||||    
T  29123717 gaggatataaa 29123707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 17839004 - 17838802
Alignment:
Q  20 agttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctc 119  Q
    |||| ||||||| ||||||||| ||||| ||||| ||||||||||||||| |||| |||||| | || ||||||||               |||||| ||    
T  17839004 agtttgctttcatccaccaaaaagtttgaagtttaaccctttcaagaagagcttcaagatgatccatatggttttg--------------gaaaatcttc 17838919  T
Q  120 ctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgat 219  Q
     |||| |||||||| || |||  |||||| ||| |||||||||||||||| || |||||||  |||| |||||| || || |||| ||||||||||||||    
T  17838918 atgttgcgatctttccaaataacaaataaaaccaaaatccaaataatagacaaagctttcatggaattctttgaaaagcccccaagagcacaaaactgat 17838819  T
Q  220 ttgcatgtgaatataaa 236  Q
    | ||||||| |||||||    
T  17838818 tagcatgtgtatataaa 17838802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 4723370 - 4723310
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttcca 76  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||| || |||||||||||    
T  4723370 atgtagttagccttcaaccaccaaaacgtttgaagtttgacccttttaataagaacttcca 4723310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 108
Target Start/End: Complemental strand, 50694219 - 50694136
Alignment:
Q  25 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 108  Q
    ||||||| ||||||||||||||| ||||| |||||||||||||||||||| |||||| |||  || || |||||||| ||||||    
T  50694219 gctttcagccaccaaaacgtttgaagtttaaccctttcaagaagaacttcaagatgatcaaagtgattctgaaaaattctcctg 50694136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 29192789 - 29192726
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagat 79  Q
    ||||| || ||||||||||||||||||||||||||||| ||||||||||| ||| |||| ||||    
T  29192789 atgtaattcgctttcaaccaccaaaacgtttggagtttaaccctttcaagtagagcttcaagat 29192726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 121 - 235
Target Start/End: Original strand, 24059482 - 24059596
Alignment:
Q  121 tgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatt 220  Q
    ||||||| |||||||| |||  ||||||||||||||||||||||||||| |||| | ||   |||| ||||||||| |||| || |||  ||||||||||    
T  24059482 tgttacggtcttttcagataacaaataagaccgaaatccaaataatagagaatgatgtccttgaattctttgagaaccctctaagagcttaaaactgatt 24059581  T
Q  221 tgcatgtgaatataa 235  Q
    || ||| | ||||||    
T  24059582 tgaatgagcatataa 24059596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 4303667 - 4303590
Alignment:
Q  25 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatc 102  Q
    ||||||| ||||||||| ||||| ||||| ||||||||||||||| |||| |||||| | || |||||||| ||||||    
T  4303667 gctttcatccaccaaaaggtttgaagtttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatc 4303590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 15706025 - 15705948
Alignment:
Q  25 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatc 102  Q
    ||||||| ||||||||| ||||| ||||| ||||||||||||||| |||| |||||| | || |||||||| ||||||    
T  15706025 gctttcatccaccaaaaggtttgaagtttaaccctttcaagaagagcttcaagatgacccatatggttttggaaaatc 15705948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 3621321 - 3621409
Alignment:
Q  20 agttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 108  Q
    |||| ||||||||||||||| | || || ||||| |||||||||| |||| |||| |||||  || ||||||| |||||||||||||||    
T  3621321 agtttgctttcaaccaccaataagtctgaagtttaaccctttcaaaaagagcttcaagatgttcattttggttctgaaaaatcctcctg 3621409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 29123908 - 29123823
Alignment:
Q  20 agttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctc 105  Q
    |||| ||||||| ||||||||| ||||| ||||| ||| ||||||||||| |||| |||||| | || | |||||| |||||||||    
T  29123908 agtttgctttcatccaccaaaaagtttgaagtttaaccttttcaagaagagcttcaagatgatccatattgttttggaaaatcctc 29123823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 34994474 - 34994539
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatga 81  Q
    ||||| || ||||||| ||||||||||||||| ||||| | ||||||||||||| |||| ||||||    
T  34994474 atgtaattcgctttcagccaccaaaacgtttgaagtttaatcctttcaagaagagcttcaagatga 34994539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 12915543 - 12915631
Alignment:
Q  20 agttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 108  Q
    |||| ||||||||||||||| ||||||| ||||| |||||||| | |||| |||| |||||| |||  || ||||| ||||| ||||||    
T  12915543 agtttgctttcaaccaccaatacgtttgaagtttaaccctttccataagagcttctagatgatcaaagtgattttggaaaattctcctg 12915631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 17469598 - 17469506
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 108  Q
    ||||| || ||||||| ||||||||| ||||| ||||| | ||||||||||||| |||| |||||| |||  || || |||||||| ||||||    
T  17469598 atgtaattcgctttcagccaccaaaatgtttgaagtttaatcctttcaagaagagcttcaagatgatcaaagtgattctgaaaaattctcctg 17469506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 24059391 - 24059443
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaag 68  Q
    |||||||| ||||||||||||||| | ||||||||||| ||| ||||||||||    
T  24059391 atgtagttcgctttcaaccaccaatatgtttggagtttaaccttttcaagaag 24059443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 36950958 - 36951014
Alignment:
Q  25 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatga 81  Q
    ||||||| ||||||||||||||| ||||| | ||||||||||||| |||| ||||||    
T  36950958 gctttcagccaccaaaacgtttgaagtttaatcctttcaagaagagcttcaagatga 36951014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 12290620 - 12290687
Alignment:
Q  110 aaaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctt 177  Q
    ||||||||| || || |||||||| || |||  |||||||||||||||||||||||||| ||| ||||    
T  12290620 aaaaatccttctatttcgatctttccaaataacaaataagaccgaaatccaaataatagtaaaagctt 12290687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 4303580 - 4303470
Alignment:
Q  126 cgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgcat 225  Q
    |||||||| || |||  |||||| | ||||||||||| |||||| || ||||||  ||||  |||||| ||||||||||  |||||||| ||||| ||||    
T  4303580 cgatctttccaaataacaaataaaatcgaaatccaaacaatagacaaagctttcgtagaactctttgaaaaacctccaagggcacaaaattgattagcat 4303481  T
Q  226 gtgaatataaa 236  Q
    | | |||||||    
T  4303480 gggtatataaa 4303470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 15705938 - 15705828
Alignment:
Q  126 cgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgcat 225  Q
    |||||||| || ||| ||||||| ||||||||||||| |||||| || ||||||  ||||  |||||| ||| ||||||  |||||||| || || ||||    
T  15705938 cgatctttccaaataataaataaaaccgaaatccaaacaatagataaagctttcgtagaactctttgaaaaatctccaagggcacaaaattggttagcat 15705839  T
Q  226 gtgaatataaa 236  Q
    | | |||||||    
T  15705838 gggtatataaa 15705828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 22340331 - 22340413
Alignment:
Q  20 agttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatc 102  Q
    |||| ||||||| ||||||||| ||||| ||||| ||| ||||||||||| |||| |||||| | || | |||||| ||||||    
T  22340331 agtttgctttcatccaccaaaaagtttgaagtttaaccttttcaagaagagcttcaagatgatccatattgttttggaaaatc 22340413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 12915620 - 12915677
Alignment:
Q  111 aaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatag 168  Q
    ||||| |||||||| |||||||| ||||||  | |||||||||||||| |||||||||    
T  12915620 aaaattctcctgttgcgatctttccatataacatataagaccgaaatctaaataatag 12915677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 25135116 - 25135164
Alignment:
Q  120 ctgttacgatcttttcatatagtaaataagaccgaaatccaaataatag 168  Q
    |||||||||||||| || |||  ||||||||| ||||||||||||||||    
T  25135116 ctgttacgatctttccaaataacaaataagactgaaatccaaataatag 25135164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 23384588 - 23384797
Alignment:
Q  13 aatatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaa 112  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||                 
T  23384588 aatatgtagttagctttcaaccaccaaaacatttggagtttgaccctttcaagaagaacttccaaatgaacaatttggttttgaaaa------------- 23384674  T
Q  113 aatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaa 212  Q
     |||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||    
T  23384675 -atcctcctgttgtgatctttccatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaattctttgagaaacctccaagagtacaa 23384773  T
Q  213 aactgatttgcatgtgaatataaa 236  Q
    ||||||||||||||||||||||||    
T  23384774 aactgatttgcatgtgaatataaa 23384797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 27915078 - 27914869
Alignment:
Q  13 aatatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||        
T  27915078 aatatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaactttcaaatgaacaatttggttttggaaaatcctcctg---- 27914983  T
Q  113 aatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaa 212  Q
              || |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||    
T  27914982 ----------ttgcgatctttccatatagtaaataagaccgaaatccaaataatagtaaatgctttcaaagaattctttgagaaacctccaagagcacaa 27914893  T
Q  213 aactgatttgcatgtgaatataaa 236  Q
    ||||| ||||||||||||||||||    
T  27914892 aactggtttgcatgtgaatataaa 27914869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 21963153 - 21963362
Alignment:
Q  13 aatatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||              |||    
T  21963153 aatatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaaggacttccagatgaacaatttggttttg--------------aaa 21963238  T
Q  113 aatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaa 212  Q
    |||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||| |||| || | ||| |||||||||||| ||||  ||||||    
T  21963239 aatcctcctgttgcgatctttccaaatagtaaataagaccgaaatccaaataatagaaaaagcttgcacaaaatgctttgagaaaccgccaagtgcacaa 21963338  T
Q  213 aactgatttgcatgtgaatataaa 236  Q
    |||||||| |||||||||||||||    
T  21963339 aactgattagcatgtgaatataaa 21963362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 32349622 - 32349828
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaat 115  Q
    ||||||||| |||||||| ||||||||||||| |||||||| |||||||| || || | || | |||||||||||||||| ||||              |    
T  32349622 atgtagttaactttcaactaccaaaacgtttgaagtttgactctttcaagtagcaccttcaaaagaacaatttggttttggaaaa--------------t 32349707  T
Q  116 cctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaac 215  Q
    ||||||||| |||||||| ||||||||  |||||||||||||||||||||||| ||| ||||||| ||||| ||||||||||||||| | ||| ||||||    
T  32349708 cctcctgttgcgatctttccatatagtgtataagaccgaaatccaaataatagtaaaagctttcatagaattctttgagaaacctcctagagcgcaaaac 32349807  T
Q  216 tgatttgcatgtgaatataaa 236  Q
    ||||| ||||| | |||||||    
T  32349808 tgattagcatgagtatataaa 32349828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 111 - 236
Target Start/End: Original strand, 30275719 - 30275843
Alignment:
Q  111 aaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcac 210  Q
    ||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||| ||| ||||||| ||||| ||||||||||||| | | ||| |    
T  30275719 aaaattctcctgttgcgatcttttcatatagtatataagaccgaaatccaaataatagtaaaagctttcatagaattctttgagaaacct-ctagagcgc 30275817  T
Q  211 aaaactgatttgcatgtgaatataaa 236  Q
    |||||||||| ||||| | |||||||    
T  30275818 aaaactgattagcatgagtatataaa 30275843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 236
Target Start/End: Original strand, 38938301 - 38938426
Alignment:
Q  111 aaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcac 210  Q
    |||||| || |||| |||||||| || |||  ||||||||| |||||||||||||||| ||| ||||||| ||||| |||||| || |||| || |||||    
T  38938301 aaaatcatcatgttgcgatctttccaaataacaaataagacagaaatccaaataatagtaaaagctttcatagaattctttgaaaagcctctaagagcac 38938400  T
Q  211 aaaactgatttgcatgtgaatataaa 236  Q
    |||| ||||| ||||||| |||||||    
T  38938401 aaaaatgattagcatgtgtatataaa 38938426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 22298660 - 22298752
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 108  Q
    ||||| || ||||||||||||||| ||||||||||||| ||||||||||| ||| |||| |||||| |||  || ||||||||||| ||||||    
T  22298660 atgtaattcgctttcaaccaccaatacgtttggagtttaaccctttcaaggagagcttcaagatgatcaaagtgattttgaaaaattctcctg 22298752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 33937249 - 33937157
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 108  Q
    ||||| || ||||||||||||||| ||||||||||||| ||||||||||| ||| |||| |||||| |||  || || |||||||| ||||||    
T  33937249 atgtaattcgctttcaaccaccaatacgtttggagtttaaccctttcaaggagagcttcaagatgatcaaagtgattctgaaaaattctcctg 33937157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 30274477 - 30274532
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaac 71  Q
    |||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||    
T  30274477 atgtagttagctttcaaccaccaaaatgtttgaagtttgactctttcaagtagaac 30274532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 235
Target Start/End: Original strand, 20007337 - 20007451
Alignment:
Q  121 tgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatt 220  Q
    ||||||| ||||| || |||  ||||||||||||||||||||||||||| |||| | ||   ||||  |||||||| ||||||| | ||||||| |||||    
T  20007337 tgttacggtctttccagataacaaataagaccgaaatccaaataatagagaatgttatccttgaattttttgagaaccctccaagaacacaaaattgatt 20007436  T
Q  221 tgcatgtgaatataa 235  Q
    || ||| | ||||||    
T  20007437 tgaatgagcatataa 20007451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 38938224 - 38938284
Alignment:
Q  20 agttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatg 80  Q
    |||| |||||||||| |||||| ||||| ||||| ||||||||||||||| |||| |||||    
T  38938224 agtttgctttcaaccgccaaaaagtttgaagtttaaccctttcaagaagagcttcaagatg 38938284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 1258208 - 1258273
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatga 81  Q
    ||||| || ||||||||||||||| || |||||||||| ||||||||||  ||| |||| ||||||    
T  1258208 atgtaattcgctttcaaccaccaatacatttggagtttaaccctttcaaagagagcttcaagatga 1258273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 53152562 - 53152353
Alignment:
Q  13 aatatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||            
T  53152562 aatatgtagttagctttcaaccaccaaaacgtttggagtttaaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcct-------- 53152471  T
Q  113 aatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaa 212  Q
          ||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| || ||||| ||||||||| |||||||  ||||||    
T  53152470 ------cctgttacgatctttccaaatagtaaataagaccgaaatccaaataatagaaaaagcttgcacagaatgctttgagaatcctccaagtgcacaa 53152377  T
Q  213 aactgatttgcatgtgaatataaa 236  Q
    |||||||| |||||||||||||||    
T  53152376 aactgattagcatgtgaatataaa 53152353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 17154284 - 17154075
Alignment:
Q  13 aatatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaa 112  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||        
T  17154284 aatacgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaaaaagaacttccaaatgaacaatttggttttggaaaatcctcctg---- 17154189  T
Q  113 aatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaa 212  Q
              || | |||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| |||    
T  17154188 ----------ttgcaatctttccatatagtaaataagactgaaatccaaataatagtaaatgctttcaaagaattctttgagaaacctccaagagcgcaa 17154099  T
Q  213 aactgatttgcatgtgaatataaa 236  Q
    ||||||||||||||||||||||||    
T  17154098 aactgatttgcatgtgaatataaa 17154075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 23572091 - 23571889
Alignment:
Q  20 agttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctc 119  Q
    |||||||||||||||||||||||||||| ||||||||||||||||  |||||||||| |||||||||||||||||| ||||||||||||               
T  23572091 agttagctttcaaccaccaaaacgtttgaagtttgaccctttcaattagaacttccaaatgaacaatttggttttggaaaatcctcctg----------- 23572003  T
Q  120 ctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgat 219  Q
       || |||||||| ||||||| |||||| ||||||||||||||||||| ||||||||||| ||||| ||||||||| ||||||||||||||||||||||    
T  23572002 ---ttgcgatctttccatatagaaaataataccgaaatccaaataatagtaaatgctttcatagaattctttgagaagcctccaaaagcacaaaactgat 23571906  T
Q  220 ttgcatgtgaatataaa 236  Q
    | ||||||| |||||||    
T  23571905 tagcatgtgtatataaa 23571889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 177
Target Start/End: Original strand, 32945636 - 32945786
Alignment:
Q  13 aatatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaa 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||    
T  32945636 aatatgtagttaactttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttg--------------aaa 32945721  T
Q  113 aatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctt 177  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||    
T  32945722 aatcctcctgttacgatctttccaaatagtaaataagaccgaaatccaaataatagaaaaagctt 32945786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 3514432 - 3514638
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaat 115  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |||| | |||||||||||||||| ||||              |    
T  3514432 atgtagttagctttcaaccaccaaaacgtttgaagtttgactctttcaagtagaacctccaaaagaacaatttggttttggaaaa--------------t 3514517  T
Q  116 cctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaac 215  Q
    ||||||||| |||||||| || |||||| |||||||||| ||||||||||||| ||| ||||||| ||||| ||||||||||||||| | ||| ||||||    
T  3514518 cctcctgttgcgatctttccaaatagtatataagaccgagatccaaataatagtaaaagctttcatagaattctttgagaaacctcctagagcgcaaaac 3514617  T
Q  216 tgatttgcatgtgaatataaa 236  Q
    ||||| ||||| | |||||||    
T  3514618 tgattagcatgagtatataaa 3514638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 9818808 - 9819014
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaat 115  Q
    ||||| |||||||||||||||||| | ||||| |||||||| |||||||| ||||| |||| | || || ||||||||||||||              ||    
T  9818808 atgtaattagctttcaaccaccaatatgtttgaagtttgactctttcaagtagaacctccaaaagagcactttggttttgaaaa--------------at 9818893  T
Q  116 cctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaac 215  Q
    ||||||||| |||||||  ||||||||| ||||||||||||||||||| |||| ||| ||||||| | ||| |||||||||||| || ||||| ||||||    
T  9818894 cctcctgttgcgatcttcccatatagtatataagaccgaaatccaaatgatagtaaaagctttcataaaattctttgagaaaccacctaaagcgcaaaac 9818993  T
Q  216 tgatttgcatgtgaatataaa 236  Q
    ||||| ||||| |||||||||    
T  9818994 tgattagcatgagaatataaa 9819014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 8542253 - 8542345
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 108  Q
    |||||||||||||||||||||||||||||| | ||||| ||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||    
T  8542253 atgtagttagctttcaaccaccaaaacgttcgaagtttaaccctttcaagaagagcttccagatgatcaatttggttttggaaaatcctcctg 8542345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 111 - 236
Target Start/End: Original strand, 42462549 - 42462674
Alignment:
Q  111 aaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcac 210  Q
    ||||||||| |||| ||||||||||| |||  |||||||||||||||||||||||||| |||  |||||| | ||| |||||| || ||||||| |||||    
T  42462549 aaaatcctcatgttgcgatcttttcaaataacaaataagaccgaaatccaaataatagtaaaacctttcatataattctttgaaaagcctccaagagcac 42462648  T
Q  211 aaaactgatttgcatgtgaatataaa 236  Q
    |||||||||| ||||||| |||||||    
T  42462649 aaaactgattagcatgtgtatataaa 42462674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 48547382 - 48547502
Alignment:
Q  110 aaaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagca 209  Q
    ||||||||||||||| |||||||| || |||  |||||||||||||||||| ||||||| ||| | | ||  ||| | ||||||||||||||||| ||||    
T  48547382 aaaaatcctcctgttgcgatctttccaaataacaaataagaccgaaatccatataatagtaaaagttgtcctagacttctttgagaaacctccaagagca 48547481  T
Q  210 caaaactgatttgcatgtgaa 230  Q
    ||||||||||| |||||||||    
T  48547482 caaaactgattagcatgtgaa 48547502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 30737247 - 30737434
Alignment:
Q  27 tttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctcctgttac 126  Q
    ||||||||||||| ||||||| ||||| ||||||||||||||| |||| |||||| |||| || ||||| ||||| |||||               || |    
T  30737247 tttcaaccaccaatacgtttgaagtttaaccctttcaagaagagcttcaagatgatcaatgtgattttggaaaattctcctc--------------ttgc 30737332  T
Q  127 gatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgcatg 226  Q
    ||||||||||||||  |||||||||||||||||| ||||||| ||| | | ||  ||| | ||||||||||||||||| || |||||||||||| |||||    
T  30737333 gatcttttcatataacaaataagaccgaaatccatataatagtaaaagttgtcctagagttctttgagaaacctccaagagtacaaaactgattcgcatg 30737432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 9246777 - 9246869
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 108  Q
    ||||| |||||||||||||||||| | ||||| |||||||| |||||||| ||||| |||| | ||||| |||||||||| || |||||||||    
T  9246777 atgtaattagctttcaaccaccaatatgtttgaagtttgactctttcaagtagaacctccaaaagaacactttggttttggaatatcctcctg 9246869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 10753811 - 10753869
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttc 74  Q
    ||||| || |||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  10753811 atgtaattcgctttcaaccaccaaaacgtctggagtttaaccctttcaagaagaacttc 10753869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 44879740 - 44879790
Alignment:
Q  13 aatatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttca 63  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  44879740 aatatgtagttagttttcaaccaccaaaacgtttgaagtttgaccctttca 44879790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 39633306 - 39633241
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatga 81  Q
    ||||| || ||||||||||||||||||||||||||||| ||||||||||| ||| |||| ||||||    
T  39633306 atgtaattcgctttcaaccaccaaaacgtttggagtttaaccctttcaagtagagcttcaagatga 39633241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 42462472 - 42462533
Alignment:
Q  20 agttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatga 81  Q
    |||||||||||||||||||||| ||||| ||||| ||||||||||||||| |||| ||||||    
T  42462472 agttagctttcaaccaccaaaaagtttgaagtttaaccctttcaagaagagcttcaagatga 42462533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 236
Target Start/End: Original strand, 23603107 - 23603217
Alignment:
Q  126 cgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgcat 225  Q
    |||||||| || |||  |||||| | |||||||||||||||||| |  ||||||| ||||| |||||| || ||||||| ||||||||||||| | ||||    
T  23603107 cgatctttccaaataacaaataaaatcgaaatccaaataatagacagagctttcatagaattctttgaaaatcctccaagagcacaaaactgaatagcat 23603206  T
Q  226 gtgaatataaa 236  Q
    | | |||||||    
T  23603207 gaggatataaa 23603217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 16663724 - 16663809
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaat 101  Q
    ||||| || ||||||| ||||||||||||||| ||||| | ||||||||||||| |||| |||||| ||| ||| || ||||||||    
T  16663724 atgtaattcgctttcagccaccaaaacgtttgaagtttaatcctttcaagaagagcttcaagatgatcaaattgattctgaaaaat 16663809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 236
Target Start/End: Complemental strand, 42459685 - 42459560
Alignment:
Q  111 aaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcac 210  Q
    ||||| |||||||| |||||||| ||||||  | |||||||||||||||||||||||| ||| |||  || | ||  | ||||||| || || | |||||    
T  42459685 aaaattctcctgttgcgatctttccatataacatataagaccgaaatccaaataatagtaaacgctaacatataactccttgagaagccaccgagagcac 42459586  T
Q  211 aaaactgatttgcatgtgaatataaa 236  Q
    |||||||||| ||||| |||| ||||    
T  42459585 aaaactgattagcatgagaatgtaaa 42459560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 8542334 - 8542381
Alignment:
Q  111 aaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatc 158  Q
    |||||||||||||||||||||||  ||||||||||||||||| |||||    
T  8542334 aaaatcctcctgttacgatctttcaatatagtaaataagaccaaaatc 8542381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 52196035 - 52196100
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatga 81  Q
    ||||| || ||||||| ||||||||||||||| ||||| | ||||||||||||| |||| ||||||    
T  52196035 atgtaatttgctttcagccaccaaaacgtttgaagtttaatcctttcaagaagagcttcaagatga 52196100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 48547306 - 48547378
Alignment:
Q  20 agttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggtt 92  Q
    |||| ||||||||||||||| | ||||| ||||| |||||||||| |||| |||| |||||  ||||||||||    
T  48547306 agtttgctttcaaccaccaataagtttgaagtttaaccctttcaaaaagagcttcgagatgttcaatttggtt 48547378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 23603015 - 23603097
Alignment:
Q  20 agttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatc 102  Q
    |||| ||||||| ||||||||| ||||| ||||| ||| ||||||||||| |||| |||||| | || | |||||| ||||||    
T  23603015 agtttgctttcatccaccaaaaggtttgaagtttaaccttttcaagaagagcttcaagatgatccatattgttttggaaaatc 23603097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 8595014 - 8595091
Alignment:
Q  25 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatc 102  Q
    ||||||| ||||||||| ||||| ||||| ||| ||||||||||| |||| |||| | | || |||||||| ||||||    
T  8595014 gctttcatccaccaaaaggtttgaagtttaaccttttcaagaagagcttcaagataacccatatggttttggaaaatc 8595091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 9e-67; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 10462614 - 10462405
Alignment:
Q  13 aatatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||         
T  10462614 aatatgtagttagctttcaaccaccaaaacgtttggagtttaaccctttcaagaagaacttccaaatgaacaatttggttttggaaaatcctccta---- 10462519  T
Q  113 aatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaa 212  Q
              || |||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||    
T  10462518 ----------ttgcgatctttccatatagtaaataagaccgaaatccaaataatagtaaatgctttcacagaattctttgagaaacctccaagagcacaa 10462429  T
Q  213 aactgatttgcatgtgaatataaa 236  Q
    | ||| ||||||||||||||||||    
T  10462428 atctggtttgcatgtgaatataaa 10462405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 5825446 - 5825237
Alignment:
Q  13 aatatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||            
T  5825446 aatatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaaggacttccagatgaacaatttggttttgaaaaatcct-------- 5825355  T
Q  113 aatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaa 212  Q
          |||||| |||||||| || ||||||||||||||||||||||||||||||||||| |||| || | ||| |||||||||||| ||||  ||||||    
T  5825354 ------cctgttgcgatctttccaaatagtaaataagaccgaaatccaaataatagaaaaagcttgcacataatgctttgagaaaccgccaagtgcacaa 5825261  T
Q  213 aactgatttgcatgtgaatataaa 236  Q
    |||||||| |||||||||||||||    
T  5825260 aactgattagcatgtgaatataaa 5825237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 13 - 232
Target Start/End: Complemental strand, 6679053 - 6678848
Alignment:
Q  13 aatatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||            
T  6679053 aatatgtagttagctttcaaccaccaaaacgtttggagtttaaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcct-------- 6678962  T
Q  113 aatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaa 212  Q
          ||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| || ||| | ||||||||  |||||||  ||||||    
T  6678961 ------cctgttacgatctttccaaatagtaaataagaccgaaatccaaataatagaaaaagcttgcacagagtgctttgagactcctccaagtgcacaa 6678868  T
Q  213 aactgatttgcatgtgaata 232  Q
    |||||||| |||||||||||    
T  6678867 aactgattagcatgtgaata 6678848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 110 - 228
Target Start/End: Original strand, 11265853 - 11265971
Alignment:
Q  110 aaaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagca 209  Q
    |||||||||||||||||||||||| || |||  |||||||||||||||||||||||||| ||| ||||||| ||| | | ||||||||||||||| ||||    
T  11265853 aaaaatcctcctgttacgatctttccaaataacaaataagaccgaaatccaaataatagtaaaagctttcatagacttccttgagaaacctccaagagca 11265952  T
Q  210 caaaactgatttgcatgtg 228  Q
    ||||||||||| |||||||    
T  11265953 caaaactgattagcatgtg 11265971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 27891526 - 27891646
Alignment:
Q  110 aaaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagca 209  Q
    ||||||||||||||| |||||||| || |||  |||||||||| ||||||| ||||||| ||| | | ||  ||| | ||||||||| ||||||| ||||    
T  27891526 aaaaatcctcctgttgcgatctttccaaataacaaataagacctaaatccatataatagtaaaagatgtcctagacttctttgagaaccctccaagagca 27891625  T
Q  210 caaaactgatttgcatgtgaa 230  Q
    ||||||||||| |||||||||    
T  27891626 caaaactgattagcatgtgaa 27891646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 38931517 - 38931609
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 108  Q
    ||||| || ||||||||||||||||||||||| ||||| ||||||||||||||| |||| |||||| |||  || || |||||||| ||||||    
T  38931517 atgtaattcgctttcaaccaccaaaacgtttgaagtttaaccctttcaagaagagcttcaagatgatcaaagtgattctgaaaaattctcctg 38931609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 31963146 - 31963054
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 108  Q
    ||||| || ||||||||||||||| ||||||||| ||| ||||||||||||||| |||| |||||| |||| || |  |||||||| ||||||    
T  31963146 atgtaattcgctttcaaccaccaatacgtttggattttaaccctttcaagaagagcttctagatgatcaatgtgatgctgaaaaattctcctg 31963054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 29322550 - 29322606
Alignment:
Q  25 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatga 81  Q
    ||||||| ||||||||||||||| ||||| | ||||||||||||| |||| ||||||    
T  29322550 gctttcagccaccaaaacgtttgaagtttaatcctttcaagaagagcttcaagatga 29322606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 8895132 - 8895185
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaaga 69  Q
    ||||| || |||||||||||| ||| |||||| ||||| |||||||||||||||    
T  8895132 atgtaattcgctttcaaccactaaaccgtttgaagtttaaccctttcaagaaga 8895185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 29150057 - 29150118
Alignment:
Q  20 agttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatga 81  Q
    |||| |||||||||||| || ||||||| ||||| |||||||||| |||| |||| ||||||    
T  29150057 agtttgctttcaaccacgaatacgtttgaagtttaaccctttcaataagagcttcaagatga 29150118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 11265782 - 11265838
Alignment:
Q  25 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatga 81  Q
    ||||||||||||||| | ||||| ||||| ||||||||||| ||| |||| ||||||    
T  11265782 gctttcaaccaccaataagtttgaagtttaaccctttcaaggagagcttcaagatga 11265838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 27891450 - 27891522
Alignment:
Q  20 agttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggtt 92  Q
    |||| ||||||||||||||| | ||||| ||||| |||||||||| |||| |||  |||||  ||||||||||    
T  27891450 agtttgctttcaaccaccaataagtttgaagtttaaccctttcaaaaagagctttgagatgttcaatttggtt 27891522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 2960067 - 2959859
Alignment:
Q  13 aatatgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaa 112  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||            
T  2960067 aatatgtagttcgctttcaaccaccaaaacgtttgaagtttgaccctttcaagaagaacttccatatgaacaatttcgttttgaaaaatcct-------- 2959976  T
Q  113 aatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaa 212  Q
          ||||||||||||||| || |||| |||||||||||||||||||||||||||||| | || || ||||| ||||||||| |||||||  ||||||    
T  2959975 ------cctgttacgatctttccaaatagaaaataagaccgaaatccaaataatagaaaaagtttacatagaatgctttgagaatcctccaagtgcacaa 2959882  T
Q  213 aactgatttgcatgtgaatataa 235  Q
    |||||||| ||||||||||||||    
T  2959881 aactgattagcatgtgaatataa 2959859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 26078200 - 26077994
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaat 115  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| | ||||||| ||||| || ||||||||||||           
T  26078200 atgtagttagctttcaaccaccaaaacgtttgaagtttgactctttcaagaagaacatccaaaagaacaatatggttatggaaaatcctcctg------- 26078108  T
Q  116 cctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaac 215  Q
           || |||||||| || |||||| |||||||||| ||||||||||||||||| ||||||| ||||| ||||||||| ||||| | ||| ||||||    
T  26078107 -------ttgcgatctttccaaatagtatataagaccgagatccaaataatagaaaaagctttcatagaattctttgagaaccctcctagagcgcaaaac 26078015  T
Q  216 tgatttgcatgtgaatataaa 236  Q
    ||||| ||||| | |||||||    
T  26078014 tgattagcatgagtatataaa 26077994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 31423685 - 31423483
Alignment:
Q  20 agttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctc 119  Q
    |||| ||||||||||||||| | ||||| ||||| |||||||||| |||| |||| |||||| ||||||||||||| ||||||||||||               
T  31423685 agtttgctttcaaccaccaataagtttgaagtttaaccctttcaaaaagagcttcgagatgatcaatttggttttggaaaatcctcctg----------- 31423597  T
Q  120 ctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgat 219  Q
       || ||||||||||| |||  |||||||||||||||||| ||||||| ||| | | ||  ||| | ||||||||||||||||| ||||||||||||||    
T  31423596 ---ttgcgatcttttcaaataacaaataagaccgaaatccatataatagtaaaagttgtcctagagttctttgagaaacctccaagagcacaaaactgat 31423500  T
Q  220 ttgcatgtgaatataaa 236  Q
    | |||||||||| ||||    
T  31423499 tagcatgtgaatttaaa 31423483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 26390634 - 26390518
Alignment:
Q  111 aaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcac 210  Q
    ||||| |||||||| |||||||| ||||||  ||||||||| ||| |||||||||||| ||| | | ||  ||||| |||||||||||| || |  ||||    
T  26390634 aaaattctcctgttgcgatctttccatataacaaataagacagaagtccaaataatagtaaaagttgtcctagaattctttgagaaaccaccgagggcac 26390535  T
Q  211 aaaactgatttgcatgt 227  Q
    ||||||| || ||||||    
T  26390534 aaaactggttagcatgt 26390518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 111 - 227
Target Start/End: Original strand, 29530003 - 29530118
Alignment:
Q  111 aaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcac 210  Q
    ||||| || |||||||||||||| ||||||  ||||||||| ||| |||| ||||||| ||| | | ||  ||||| ||||||||||||| |||  ||||    
T  29530003 aaaattcttctgttacgatctttccatataacaaataagacagaagtccagataataggaaa-gttgtcctagaattctttgagaaacctacaagggcac 29530101  T
Q  211 aaaactgatttgcatgt 227  Q
    |||||||||| ||||||    
T  29530102 aaaactgattagcatgt 29530118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 108
Target Start/End: Complemental strand, 26390706 - 26390623
Alignment:
Q  25 gctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 108  Q
    ||||||||||||||||||||||| || || | ||||||||||||| | || |||||| || | || ||||| ||||| ||||||    
T  26390706 gctttcaaccaccaaaacgtttgaagcttaatcctttcaagaagagcctctagatgatcactgtgattttggaaaattctcctg 26390623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 29529926 - 29529975
Alignment:
Q  20 agttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaaga 69  Q
    |||| ||||||||||||||||| ||||| || || |||||||||||||||    
T  29529926 agtttgctttcaaccaccaaaatgtttgaagcttaaccctttcaagaaga 29529975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 5e-53; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 41343282 - 41343076
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaat 115  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||| |||||||||||||||||| |||||||||||            
T  41343282 atgtagttagctttcaaccaccaaaacgtttgaagtttgaccctttcaagtataacttccaaatgaacaatttggttttggaaaatcctccta------- 41343190  T
Q  116 cctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaac 215  Q
           || |||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| ||||||| ||| ||||||    
T  41343189 -------ttgcgatctttccatatagtaaataagaccgaaatccaaataatagtaaatgctttcatagaattctttgagaagcctccaagagcgcaaaac 41343097  T
Q  216 tgatttgcatgtgaatataaa 236  Q
    ||||| |||| || |||||||    
T  41343096 tgattagcatttgtatataaa 41343076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 114 - 236
Target Start/End: Original strand, 27029784 - 27029906
Alignment:
Q  114 atcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaa 213  Q
    ||||||||||| |||||||| || |||||| ||||||||||||||||||| |||| ||| ||||||| ||||| |||||||||||| || ||||| ||||    
T  27029784 atcctcctgttgcgatctttccaaatagtatataagaccgaaatccaaatgatagtaaaagctttcatagaattctttgagaaaccacctaaagcgcaaa 27029883  T
Q  214 actgatttgcatgtgaatataaa 236  Q
    ||||||| ||||| |||||||||    
T  27029884 actgattagcatgagaatataaa 27029906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 114 - 236
Target Start/End: Original strand, 10003763 - 10003885
Alignment:
Q  114 atcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaa 213  Q
    ||||| ||||| |||||||| || |||||| ||||||||||||||||||| |||| ||| ||||||| ||||| |||||||||||| || ||||| ||||    
T  10003763 atccttctgttgcgatctttccaaatagtatataagaccgaaatccaaatgatagtaaaagctttcatagaattctttgagaaaccacctaaagcgcaaa 10003862  T
Q  214 actgatttgcatgtgaatataaa 236  Q
    ||||||| ||||| |||||||||    
T  10003863 actgattagcatgagaatataaa 10003885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 5557095 - 5557215
Alignment:
Q  110 aaaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagca 209  Q
    ||||||||||||||| |||||||| || | |  |||||||||||||||||| ||||||| ||| | | || |||||| |||||||||| |||||| ||||    
T  5557095 aaaaatcctcctgttgcgatctttccaaacaacaaataagaccgaaatccatataatagtaaaagttatccaagaattctttgagaaagctccaagagca 5557194  T
Q  210 caaaactgatttgcatgtgaa 230  Q
    ||||||||||| |||||||||    
T  5557195 caaaactgattagcatgtgaa 5557215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 48759892 - 48759800
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 108  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||| | ||| |||| | |||||||||||||||| |||||| |||||    
T  48759892 atgtagttagctttcaaccaccaaaacgtttgaagtttgactctttcaagtaaaacctccaaaagaacaatttggttttggaaaatcttcctg 48759800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 37666112 - 37666193
Alignment:
Q  27 tttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 108  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| |||| |||||| ||| ||| |  |||||||| ||||||    
T  37666112 tttcaaccaccaaaatgtttggagtttgaccctttcaagtagagcttcaagatgatcaaattgatgctgaaaaattctcctg 37666193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 44753814 - 44753748
Alignment:
Q  111 aaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctt 177  Q
    |||||||| ||||| || ||||| ||||||||| |||||||||||||||||||||||| ||| ||||    
T  44753814 aaaatccttctgttgcggtctttccatatagtatataagaccgaaatccaaataatagtaaaagctt 44753748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 44753895 - 44753807
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcct 104  Q
    ||||| |||||||||||||||||| | |||||||||||||| |||||||| ||||  |||| | |  || |||||||||| ||||||||    
T  44753895 atgtaattagctttcaaccaccaatatgtttggagtttgactctttcaagtagaaactccaaaagtgcactttggttttggaaaatcct 44753807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 27029700 - 27029779
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttg 95  Q
    ||||| |||||||||||||||||| | ||||| |||||||| |||||||| ||||| |||| | || || ||||||||||    
T  27029700 atgtaattagctttcaaccaccaatatgtttgaagtttgactctttcaagtagaacctccaaaagagcactttggttttg 27029779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 49369519 - 49369601
Alignment:
Q  20 agttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatc 102  Q
    |||| ||||||| ||||||||| ||||| ||||| ||||||||||||||| |||| |||||| | |  |||||||| ||||||    
T  49369519 agtttgctttcatccaccaaaaggtttgaagtttaaccctttcaagaagagcttcaagatgacccaaatggttttggaaaatc 49369601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 40392461 - 40392513
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaag 68  Q
    |||||||| ||||||||||||||| | ||||||||||| ||| ||||||||||    
T  40392461 atgtagttcgctttcaaccaccaatatgtttggagtttaaccttttcaagaag 40392513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 5557019 - 5557090
Alignment:
Q  20 agttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggt 91  Q
    |||| ||||||||||||||  | ||||| ||||| |||||||||| |||| |||| |||||| |||||||||    
T  5557019 agtttgctttcaaccaccagtaagtttgaagtttaaccctttcaaaaagagcttcgagatgatcaatttggt 5557090  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 26995826 - 26995917
Alignment:
Q  144 aataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgcatgtgaatataa 235  Q
    |||||||||||||||||||||| ||| |||| | ||   ||||  |||||||| ||||||| || |||||||||||||| ||| | ||||||    
T  26995826 aataagaccgaaatccaaataacagagaatgttgtccttgaattttttgagaaccctccaagagtacaaaactgatttgaatgagcatataa 26995917  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 220
Target Start/End: Original strand, 45757519 - 45757621
Alignment:
Q  118 tcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactg 217  Q
    ||||||| | |||||| ||||||  |||||||||  || |||| ||||||| ||| | | ||  ||||| ||||||||| |||||||| |||||||||||    
T  45757519 tcctgttgcaatctttccatataacaaataagacaaaagtccagataatagtaaaaggtgtcctagaattctttgagaagcctccaaaggcacaaaactg 45757618  T
Q  218 att 220  Q
    |||    
T  45757619 att 45757621  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 45757435 - 45757484
Alignment:
Q  20 agttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaaga 69  Q
    |||| ||||||||||||||||| ||||| || || |||||||||||||||    
T  45757435 agtttgctttcaaccaccaaaatgtttgaagcttaaccctttcaagaaga 45757484  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 49369628 - 49369721
Alignment:
Q  143 aaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgatttgcatgtgaatataaa 236  Q
    |||||| | |||||||||||||||||| || ||||||  | ||| |||||| ||||||||||  ||| ||||||| || ||||| | |||||||    
T  49369628 aaataaaatcgaaatccaaataatagacaaagctttcgtataattctttgaaaaacctccaagggcataaaactggttagcatgagtatataaa 49369721  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 26995713 - 26995765
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaag 68  Q
    |||||||| ||||||||||||||| | ||||||||||| ||| | ||||||||    
T  26995713 atgtagttcgctttcaaccaccaatatgtttggagtttaaccttctcaagaag 26995765  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 40392606 - 40392658
Alignment:
Q  183 gaatactttgagaaacctccaaaagcacaaaactgatttgcatgtgaatataa 235  Q
    |||| ||||||||| ||||||| ||||||||||||||||| ||| | ||||||    
T  40392606 gaattctttgagaaccctccaagagcacaaaactgatttgaatgagcatataa 40392658  T

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Target: scaffold0041 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 74046 - 74252
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaat 115  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||               |||||    
T  74046 atgtagttagctttcaaccaccaaaacgtttgaagtttaaccctttcaagaagagcttccagatgatcaatttggttttg--------------gaaaat 74131  T
Q  116 cctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaac 215  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| ||||| |||||||||  |||  | ||| ||||||    
T  74132 cctcctgttgcgatctttccatatagtaaataagaccgaaatccaaataatagtaaaagctttcatagaattctttgagaagtctcttagagcgcaaaac 74231  T
Q  216 tgatttgcatgtgaatataaa 236  Q
    |||||  |||||| |||||||    
T  74232 tgattatcatgtgtatataaa 74252  T

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Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 18295870 - 18295675
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaat 115  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||  ||||| |||| | |||||||||||||||| ||||||||| ||           
T  18295870 atgtagttagctttcaaccaccaaaacgtttgaagtttgactctttcaaatagaacctccaaaagaacaatttggttttggaaaatcctcttg------- 18295778  T
Q  116 cctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaac 215  Q
           || |||||||| ||||||||| ||||| |||| ||||||||||||| ||| ||||||| ||||| ||||||||||||||| | ||| ||||||    
T  18295777 -------ttgcgatctttccatatagtatataaggccgagatccaaataatagtaaaagctttcatagaattctttgagaaacctcctagagcgcaaaac 18295685  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 111 - 228
Target Start/End: Original strand, 667092 - 667209
Alignment:
Q  111 aaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcac 210  Q
    |||||||||||||| |||||||| ||||||  |||||||||||||||||||||||||| ||| ||||||| | ||| ||||||||||||||||| |||||    
T  667092 aaaatcctcctgttgcgatctttccatataacaaataagaccgaaatccaaataatagtaaaagctttcatataattctttgagaaacctccaagagcac 667191  T
Q  211 aaaactgatttgcatgtg 228  Q
    |||||||||| |||||||    
T  667192 aaaactgattagcatgtg 667209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 110 - 230
Target Start/End: Complemental strand, 28605281 - 28605161
Alignment:
Q  110 aaaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagca 209  Q
    |||||||||||||||||||||||| || |||  |||||||||||||||||||||||||| ||| ||| ||| ||| | ||| ||||| ||||||| ||||    
T  28605281 aaaaatcctcctgttacgatctttccaaataacaaataagaccgaaatccaaataatagtaaaagctgtcatagacttcttggagaaccctccaagagca 28605182  T
Q  210 caaaactgatttgcatgtgaa 230  Q
    ||||||||||  |||||||||    
T  28605181 caaaactgatgagcatgtgaa 28605161  T

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Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 111 - 236
Target Start/End: Original strand, 2894066 - 2894191
Alignment:
Q  111 aaaatcctcctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcac 210  Q
    |||||||||||||| || ||||||||||||||| ||||||||||||||||||| |||| ||| |||| || ||||| ||||||||| || || | ||| |    
T  2894066 aaaatcctcctgttgcggtcttttcatatagtatataagaccgaaatccaaatgatagtaaaagcttgcatagaattctttgagaacccacctagagcgc 2894165  T
Q  211 aaaactgatttgcatgtgaatataaa 236  Q
    |||||||||  ||||| |||||||||    
T  2894166 aaaactgatgagcatgagaatataaa 2894191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 5391991 - 5391926
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatga 81  Q
    ||||| || ||||||| ||||||||||||||| ||||| | ||||||||||||| |||| ||||||    
T  5391991 atgtaattcgctttcagccaccaaaacgtttgaagtttaatcctttcaagaagagcttcaagatga 5391926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 17227680 - 17227761
Alignment:
Q  20 agttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaat 101  Q
    |||| ||||||||||||||| ||||||||||||| ||||||| ||||||| || | || | | |||| || |||||||||||    
T  17227680 agttcgctttcaaccaccaatacgtttggagtttaacccttttaagaagagctgcaagctaatcaatgtgattttgaaaaat 17227761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 9759977 - 9759885
Alignment:
Q  16 atgtagttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctg 108  Q
    ||||| || ||||||||||||||| || |||| ||||| |||||  |||||||| | || |||||| ||||||| |||||||| || ||||||    
T  9759977 atgtaattcgctttcaaccaccaatacatttgaagtttaaccctcccaagaagagcatcaagatgatcaatttgattttgaaatattctcctg 9759885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 2893991 - 2894039
Alignment:
Q  22 ttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaa 70  Q
    ||||||||||| |||||| | |||||||||||||| |||||||| ||||    
T  2893991 ttagctttcaaacaccaatatgtttggagtttgactctttcaagtagaa 2894039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 58866 - 58672
Alignment:
Q  20 agttagctttcaaccaccaaaacgtttggagtttgaccctttcaagaagaacttccagatgaacaatttggttttgaaaaatcctcctgaaaaaatcctc 119  Q
    |||| ||||||||||||||| | ||||| ||||| ||||||||||||||| |||| |||||| | || |||||||| ||||||||              |    
T  58866 agtttgctttcaaccaccaatatgtttgaagtttaaccctttcaagaagagcttcaagatgatccatatggttttggaaaatcct--------------c 58781  T
Q  120 ctgttacgatcttttcatatagtaaataagaccgaaatccaaataatagaaaatgctttcaaagaatactttgagaaacctccaaaagcacaaaactgat 219  Q
    ||||| |||||||| ||||||  |||||||||||||||||||||||||| ||| ||| ||| ||  | ||||||||||||||||| ||||||||||||||    
T  58780 ctgttgcgatctttccatataacaaataagaccgaaatccaaataatagtaaaagctatcatagcgttctttgagaaacctccaagagcacaaaactgat 58681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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