View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20779_high_19 (Length: 242)
Name: NF20779_high_19
Description: NF20779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20779_high_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 33628398 - 33628614
Alignment:
| Q |
1 |
tttggattcaatgcacatcatatggggtaaacattggttttggtatcggtttgttaaaggagaagacggagaaggaaatcatccatgaagtttgcatgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33628398 |
tttggattcaatgcacatcatatggggtaaacattggttttggtatcggtttgttaaaggagaagacggagaaggaaatcatccatgaagtttgcatgca |
33628497 |
T |
|
| Q |
101 |
aaattgaaagaaaaattattgatgtattttttgaaacattatatgtactatttcttatatttgtactagattttttaaaattcagttttgtttagatttg |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33628498 |
aaattgaaagaaaaattgttgatgtattttttgaaacattatatgtactatttcttatatttgtactagattttttaaaattcagttttgtttagatttg |
33628597 |
T |
|
| Q |
201 |
ataaaatctatcattca |
217 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
33628598 |
ataaaatctataattca |
33628614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 67 - 227
Target Start/End: Original strand, 33624556 - 33624716
Alignment:
| Q |
67 |
cggagaaggaaatcatccatgaagtttgcatgcaaaattgaaag-aaaaattattgatgtattttttgaaacattatatgtactatttcttatatttgta |
165 |
Q |
| |
|
|||||||||||||| ||||||||||||| || |||| |||||| ||||| | ||||| |||| ||||||| | |||| |||||||||||||||| || |
|
|
| T |
33624556 |
cggagaaggaaatcgtccatgaagtttgtatacaaacatgaaagaaaaaaatgttgatatattctttgaaaaa--atatatactatttcttatattagtg |
33624653 |
T |
|
| Q |
166 |
ctagatttttt-aaaattcagttttgtttagatttgataaaatctatcattcatagttgttag |
227 |
Q |
| |
|
||| ||||||| | || ||| | ||| ||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
33624654 |
ctatattttttcagaagtcaatgttgcttagatttgatgaaatctataattcatagttgttag |
33624716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 33609913 - 33610006
Alignment:
| Q |
1 |
tttggattcaatgcacatcatatggggtaaacattggttttggtatcggtttgttaaaggagaagacggagaaggaaatcatccatgaagtttg |
94 |
Q |
| |
|
||||||||||||| ||| |||||||| |||||||||||||||| ||| ||||||||||||||||| | ||| ||||||||||||||||||| |
|
|
| T |
33609913 |
tttggattcaatgtacaccatatgggaaaaacattggttttggtgtcgatttgttaaaggagaagatcgtcaagaaaatcatccatgaagtttg |
33610006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University