View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20779_high_23 (Length: 214)
Name: NF20779_high_23
Description: NF20779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20779_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 22 - 191
Target Start/End: Original strand, 12843354 - 12843523
Alignment:
| Q |
22 |
ataagtgcaatactcaacaagactaatatcaaacactatatgattctatttctacctctataggtgaaattaacactataatctctaaaatgagttaaga |
121 |
Q |
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| T |
12843354 |
ataagtgcaatactcaacaagactaatatcaaacactatatgattctatttctacctctataggtgaaattaacactataatctctaaaatgagttaaga |
12843453 |
T |
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| Q |
122 |
acataagaatgattaatcgatcttaacagtagacattaacactataatcttgaatcttgattgaaattta |
191 |
Q |
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| T |
12843454 |
acataagaatgattaatcgatcttaacagtagacattaacactataatcttgaatcttgattgaaattta |
12843523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 92 - 191
Target Start/End: Complemental strand, 12862057 - 12861958
Alignment:
| Q |
92 |
taacactataatctctaaaatgagttaagaacataagaatgattaatcgatcttaacagtagacattaacactataatcttgaatcttgattgaaattta |
191 |
Q |
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| T |
12862057 |
taacactataatctctaaaatgagttacgaacataagagtgattaatcgatcttaacagtagacattaacactataatcttgaatcttgattgaaattta |
12861958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 13125763 - 13125837
Alignment:
| Q |
93 |
aacactataatctctaaaatgagttaagaacataagaatgattaatcgatcttaacagtagacattaacactata |
167 |
Q |
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| T |
13125763 |
aacactataatctctaaaatgagttaggaacataagagtgattaatcgatcttaacagtacacattaacactata |
13125837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 13125589 - 13125629
Alignment:
| Q |
149 |
agtagacattaacactataatcttgaatcttgattgaaatt |
189 |
Q |
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| T |
13125589 |
agtagacattaacactatgatcttgaatcttgatagaaatt |
13125629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 13125540 - 13125587
Alignment:
| Q |
22 |
ataagtgcaatactcaacaagactaatatcaaacactatatgattcta |
69 |
Q |
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|||||||||||||||||||| ||||| |||||||||| ||| |||||| |
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| T |
13125540 |
ataagtgcaatactcaacaacactaaaatcaaacactgtattattcta |
13125587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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