View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20779_high_6 (Length: 403)

Name: NF20779_high_6
Description: NF20779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20779_high_6
NF20779_high_6
[»] chr3 (7 HSPs)
chr3 (1-383)||(23627562-23627944)
chr3 (1-150)||(23640405-23640554)
chr3 (1-118)||(23654354-23654471)
chr3 (315-383)||(23640025-23640093)
chr3 (200-235)||(3173548-3173583)
chr3 (201-235)||(31184515-31184549)
chr3 (206-235)||(38472203-38472232)
[»] chr4 (4 HSPs)
chr4 (200-236)||(14075155-14075191)
chr4 (206-235)||(22787243-22787272)
chr4 (206-235)||(38704677-38704706)
chr4 (200-228)||(56360430-56360458)
[»] chr7 (4 HSPs)
chr7 (200-235)||(13471528-13471563)
chr7 (203-236)||(1975243-1975276)
chr7 (202-235)||(3671376-3671409)
chr7 (203-235)||(12422596-12422628)
[»] chr5 (4 HSPs)
chr5 (202-237)||(2269845-2269880)
chr5 (200-236)||(18257360-18257396)
chr5 (200-236)||(35240496-35240532)
chr5 (200-236)||(38308539-38308575)
[»] chr2 (3 HSPs)
chr2 (200-235)||(42873978-42874013)
chr2 (206-236)||(18742565-18742595)
chr2 (206-235)||(39541443-39541472)
[»] chr6 (2 HSPs)
chr6 (201-235)||(32245390-32245424)
chr6 (200-236)||(32400913-32400949)
[»] chr1 (3 HSPs)
chr1 (202-236)||(3336323-3336357)
chr1 (206-236)||(42283616-42283646)
chr1 (206-235)||(36566892-36566921)
[»] scaffold0063 (1 HSPs)
scaffold0063 (203-236)||(51730-51763)
[»] chr8 (6 HSPs)
chr8 (206-235)||(9135314-9135343)
chr8 (206-235)||(42788116-42788145)
chr8 (203-235)||(10451655-10451687)
chr8 (203-235)||(34010802-34010834)
chr8 (200-236)||(37411532-37411568)
chr8 (200-236)||(40665916-40665952)
[»] scaffold0001 (1 HSPs)
scaffold0001 (201-237)||(439989-440025)


Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 23627944 - 23627562
Alignment:
Q  1 agattgtgacatgtactcaaacaattctcaatcaataagagatgcactttgcttcttcatggatgaagagaagggacatgaaattgcgtttgtgcaggct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23627944 agattgtgacatgtactcaaacaattctcaatcaataagagatgcactttgcttcttcatggatgaagagaagggacatgaaattgcctttgtgcaggct 23627845  T
Q  101 cctcagggctttgaaaatatcacaaaaaatgacatatacagtggttcttttcgtatacctcatgaggtaaatatgttcataaaattgaagtgtatacagt 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  23627844 cctcagggctttgaaaatatcacaaaaaatgacatatacggtggttcttttcgcatacctcatgaggtaaatatgttcataaaattgaagtgtatacact 23627745  T
Q  201 aaagagttaaatatatttttagtccctataaatatgctgattgactccaacagtagcttatttacgccaattgtttataaactttgaacacatatgtaat 300  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23627744 aaagagttaaatatatttttggtccctataaatatgctgattgactccaatagtagcttatttacaccaattgtttataaactttgaacacatatgtaat 23627645  T
Q  301 gtaggtggatttacatggctttgatggatttggcgggcccatgtatattggaactggctgctttcatagaagagatgcactat 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23627644 gtaggtggatttacatggctttgatggatttggcgggcccatgtatattggaactggctgctttcatagaagagatgcactat 23627562  T

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Target: chr3; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 23640554 - 23640405
Alignment:
Q  1 agattgtgacatgtactcaaacaattctcaatcaataagagatgcactttgcttcttcatggatgaagagaagggacatgaaattgcgtttgtgcaggct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  23640554 agattgtgacatgtactcaaacaattctcaatcaataagagatgcactttgcttcttcatggatgaagagaagggacatgaaattgcctttgtgcagact 23640455  T
Q  101 cctcagggctttgaaaatatcacaaaaaatgacatatacagtggttcttt 150  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23640454 cctcagggctttgaaaatatcacaaaaaatgacatatacggtggttcttt 23640405  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 23654471 - 23654354
Alignment:
Q  1 agattgtgacatgtactcaaacaattctcaatcaataagagatgcactttgcttcttcatggatgaagagaagggacatgaaattgcgtttgtgcaggct 100  Q
    |||||||||||||||||||||||||||  |||| ||||||||| | || || |  ||||||||||||||||| || ||||||||||| ||||||||| ||    
T  23654471 agattgtgacatgtactcaaacaattcagaatctataagagattctctctgttatttcatggatgaagagaaaggccatgaaattgcttttgtgcagtct 23654372  T
Q  101 cctcagggctttgaaaat 118  Q
    || |||| ||||||||||    
T  23654371 ccacaggcctttgaaaat 23654354  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 315 - 383
Target Start/End: Complemental strand, 23640093 - 23640025
Alignment:
Q  315 atggctttgatggatttggcgggcccatgtatattggaactggctgctttcatagaagagatgcactat 383  Q
    ||||||| ||||||||||| |||||  |||||||||||||||||||||||||||||||||||| |||||    
T  23640093 atggcttagatggatttggtgggcctttgtatattggaactggctgctttcatagaagagatgtactat 23640025  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 235
Target Start/End: Complemental strand, 3173583 - 3173548
Alignment:
Q  200 taaagagttaaatatatttttagtccctataaatat 235  Q
    |||||||||||||||||||||||||| |||||||||    
T  3173583 taaagagttaaatatatttttagtccttataaatat 3173548  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 235
Target Start/End: Original strand, 31184515 - 31184549
Alignment:
Q  201 aaagagttaaatatatttttagtccctataaatat 235  Q
    |||||||||||||| ||||||||||||||||||||    
T  31184515 aaagagttaaatatgtttttagtccctataaatat 31184549  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 235
Target Start/End: Original strand, 38472203 - 38472232
Alignment:
Q  206 gttaaatatatttttagtccctataaatat 235  Q
    ||||||||||||||||||||||||||||||    
T  38472203 gttaaatatatttttagtccctataaatat 38472232  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 14075155 - 14075191
Alignment:
Q  200 taaagagttaaatatatttttagtccctataaatatg 236  Q
    ||||||||||||||||||||| |||||||||||||||    
T  14075155 taaagagttaaatatatttttggtccctataaatatg 14075191  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 235
Target Start/End: Complemental strand, 22787272 - 22787243
Alignment:
Q  206 gttaaatatatttttagtccctataaatat 235  Q
    ||||||||||||||||||||||||||||||    
T  22787272 gttaaatatatttttagtccctataaatat 22787243  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 235
Target Start/End: Original strand, 38704677 - 38704706
Alignment:
Q  206 gttaaatatatttttagtccctataaatat 235  Q
    ||||||||||||||||||||||||||||||    
T  38704677 gttaaatatatttttagtccctataaatat 38704706  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 228
Target Start/End: Complemental strand, 56360458 - 56360430
Alignment:
Q  200 taaagagttaaatatatttttagtcccta 228  Q
    |||||||||||||||||||||||||||||    
T  56360458 taaagagttaaatatatttttagtcccta 56360430  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 235
Target Start/End: Original strand, 13471528 - 13471563
Alignment:
Q  200 taaagagttaaatatatttttagtccctataaatat 235  Q
    ||||||||||||||| ||||||||||||||||||||    
T  13471528 taaagagttaaatatgtttttagtccctataaatat 13471563  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 1975243 - 1975276
Alignment:
Q  203 agagttaaatatatttttagtccctataaatatg 236  Q
    |||||||||||||||||| |||||||||||||||    
T  1975243 agagttaaatatatttttggtccctataaatatg 1975276  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 3671409 - 3671376
Alignment:
Q  202 aagagttaaatatatttttagtccctataaatat 235  Q
    ||||||||||||| ||||||||||||||||||||    
T  3671409 aagagttaaatatgtttttagtccctataaatat 3671376  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 235
Target Start/End: Original strand, 12422596 - 12422628
Alignment:
Q  203 agagttaaatatatttttagtccctataaatat 235  Q
    |||||||||||||||||| ||||||||||||||    
T  12422596 agagttaaatatatttttggtccctataaatat 12422628  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 237
Target Start/End: Original strand, 2269845 - 2269880
Alignment:
Q  202 aagagttaaatatatttttagtccctataaatatgc 237  Q
    |||||||||||||||||||| |||||||||||||||    
T  2269845 aagagttaaatatatttttaatccctataaatatgc 2269880  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 18257396 - 18257360
Alignment:
Q  200 taaagagttaaatatatttttagtccctataaatatg 236  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  18257396 taaagggttaaatatgtttttagtccctataaatatg 18257360  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 35240532 - 35240496
Alignment:
Q  200 taaagagttaaatatatttttagtccctataaatatg 236  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  35240532 taaagggttaaatatatttttggtccctataaatatg 35240496  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 38308539 - 38308575
Alignment:
Q  200 taaagagttaaatatatttttagtccctataaatatg 236  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  38308539 taaagagttaaatatgtttttggtccctataaatatg 38308575  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 235
Target Start/End: Complemental strand, 42874013 - 42873978
Alignment:
Q  200 taaagagttaaatatatttttagtccctataaatat 235  Q
    ||||||||||||||| ||||||||||||||||||||    
T  42874013 taaagagttaaatatgtttttagtccctataaatat 42873978  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 236
Target Start/End: Complemental strand, 18742595 - 18742565
Alignment:
Q  206 gttaaatatatttttagtccctataaatatg 236  Q
    |||||||||||||||||||||||||||||||    
T  18742595 gttaaatatatttttagtccctataaatatg 18742565  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 235
Target Start/End: Original strand, 39541443 - 39541472
Alignment:
Q  206 gttaaatatatttttagtccctataaatat 235  Q
    ||||||||||||||||||||||||||||||    
T  39541443 gttaaatatatttttagtccctataaatat 39541472  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 235
Target Start/End: Complemental strand, 32245424 - 32245390
Alignment:
Q  201 aaagagttaaatatatttttagtccctataaatat 235  Q
    |||||||||||||| ||||||||||||||||||||    
T  32245424 aaagagttaaatatgtttttagtccctataaatat 32245390  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 32400949 - 32400913
Alignment:
Q  200 taaagagttaaatatatttttagtccctataaatatg 236  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  32400949 taaagggttaaatatgtttttagtccctataaatatg 32400913  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 236
Target Start/End: Original strand, 3336323 - 3336357
Alignment:
Q  202 aagagttaaatatatttttagtccctataaatatg 236  Q
    ||||||||||||||||||| |||||||||||||||    
T  3336323 aagagttaaatatatttttggtccctataaatatg 3336357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 236
Target Start/End: Complemental strand, 42283646 - 42283616
Alignment:
Q  206 gttaaatatatttttagtccctataaatatg 236  Q
    |||||||||||||||||||||||||||||||    
T  42283646 gttaaatatatttttagtccctataaatatg 42283616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 235
Target Start/End: Complemental strand, 36566921 - 36566892
Alignment:
Q  206 gttaaatatatttttagtccctataaatat 235  Q
    ||||||||||||||||||||||||||||||    
T  36566921 gttaaatatatttttagtccctataaatat 36566892  T

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Target: scaffold0063 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 51730 - 51763
Alignment:
Q  203 agagttaaatatatttttagtccctataaatatg 236  Q
    |||||||||||| |||||||||||||||||||||    
T  51730 agagttaaatatgtttttagtccctataaatatg 51763  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 235
Target Start/End: Original strand, 9135314 - 9135343
Alignment:
Q  206 gttaaatatatttttagtccctataaatat 235  Q
    ||||||||||||||||||||||||||||||    
T  9135314 gttaaatatatttttagtccctataaatat 9135343  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 235
Target Start/End: Complemental strand, 42788145 - 42788116
Alignment:
Q  206 gttaaatatatttttagtccctataaatat 235  Q
    ||||||||||||||||||||||||||||||    
T  42788145 gttaaatatatttttagtccctataaatat 42788116  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 235
Target Start/End: Original strand, 10451655 - 10451687
Alignment:
Q  203 agagttaaatatatttttagtccctataaatat 235  Q
    |||||||||||| ||||||||||||||||||||    
T  10451655 agagttaaatatgtttttagtccctataaatat 10451687  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 34010834 - 34010802
Alignment:
Q  203 agagttaaatatatttttagtccctataaatat 235  Q
    |||||||||||| ||||||||||||||||||||    
T  34010834 agagttaaatatttttttagtccctataaatat 34010802  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 37411532 - 37411568
Alignment:
Q  200 taaagagttaaatatatttttagtccctataaatatg 236  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  37411532 taaagggttaaatatattttttgtccctataaatatg 37411568  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 40665916 - 40665952
Alignment:
Q  200 taaagagttaaatatatttttagtccctataaatatg 236  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  40665916 taaagggttaaatatatttttagtccttataaatatg 40665952  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 440025 - 439989
Alignment:
Q  201 aaagagttaaatatatttttagtccctataaatatgc 237  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  440025 aaagggttaaatatattttttgtccctataaatatgc 439989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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