View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20779_low_1 (Length: 661)
Name: NF20779_low_1
Description: NF20779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20779_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 482; Significance: 0; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 17 - 629
Target Start/End: Original strand, 9659622 - 9660258
Alignment:
| Q |
17 |
aaaataaagtttcatgtggacagtagttgacaactagctcactcatagttcaattgaatgtgcatatatcagtgtatcacacaatacatatacgcacgca |
116 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9659622 |
aaaataaagtttcatggggacagtagttgacaactagctcactcatagctcaattgaatgtgcatatatcagtgtatcacacaatacatatacgcactca |
9659721 |
T |
|
| Q |
117 |
c----tca----------aaccatcactattggaactaaaatctaacacatattatctgttaattttaattggcataaacagtacacttccaaagcagaa |
202 |
Q |
| |
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||| | ||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
9659722 |
aaccatcattatttagatatccatcaccattggaactaaaatctaacacatattatctgttaatttaaattgacataaacagtacacttccaaagcagaa |
9659821 |
T |
|
| Q |
203 |
ttcttctgaggtgaaaagtgttctttaaaaagcatgcaacttttaatgaaaatcttaataccataacttgaaaatgtttacaggataaacttgctactgt |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9659822 |
ttcttctgaggtgaaaagtgttctttaaaaagcatgcaacttttaatgaaaatcttcatacgataacttgaaaatgtttacaggataaacttgctactgt |
9659921 |
T |
|
| Q |
303 |
taaagaaatcaacttgcaaaactatttacaacttattacaatgtcagctgtaaaatctaacctatcatgaaaagaacaaagtggctcctaactcattgaa |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9659922 |
taaagaaatcaacttgcaaaactatttacaacttattacaatgtcagctgttaaatctaacctatcatgaaaagaacaaagtggctcctaactcattgaa |
9660021 |
T |
|
| Q |
403 |
atggttacaaaatctggaaac----------atagaagaattttttatatgaaaattccaaagtgagtgttaaaaacaaaaacccattatattagtccac |
492 |
Q |
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| T |
9660022 |
atggttacaaaatctggaaacaataccaaatataaaagcattttttatatgaaaattccaaagtgagtgttaaaaacaaaaacccattatattagtccac |
9660121 |
T |
|
| Q |
493 |
atcacttaataacagtaaaatttactacactcggccattgaaatggcacttagaattagaataccaatagcaaccaaaaaatattgaactaaaattgcag |
592 |
Q |
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| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9660122 |
accacttaataacagtaaaatttactacactcggccatcgaaatggcacttagaattagaataccaatagcaaccaaaaaatattgaactaaaattgcag |
9660221 |
T |
|
| Q |
593 |
agccctccgtgaataggactcttccaaaaactggcat |
629 |
Q |
| |
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||| |||| |||||||||||||||||||||||||||| |
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| T |
9660222 |
agcactccatgaataggactcttccaaaaactggcat |
9660258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 48 - 415
Target Start/End: Original strand, 12108901 - 12109283
Alignment:
| Q |
48 |
aactagctcactcatagttcaattgaatgtgcatatatcagtgtatcacacaatacatatacgcacgcac----tca----------aaccatcactatt |
133 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||| || ||| | ||||||||||| |
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| T |
12108901 |
aactagctcactcatggctcaattgaatgtgcatatatcagtgtatcacacaatacatatacacactcaaatcatcattgtttagatatccatcactatt |
12109000 |
T |
|
| Q |
134 |
ggaactaaaatctaacacatattatctgttaattttaattggcataaacagtacacttccaaagcagaattcttctgaggtgaaaagtgttctttaaaaa |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| || | | ||| ||| || |||||||||||||||||||||||||||||| |
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| T |
12109001 |
ggaactaaaatctaacacatattatctgttaattttacttggcataaacattatccattcaatgcaaaactcttctgaggtgaaaagtgttctttaaaaa |
12109100 |
T |
|
| Q |
234 |
gcatgcaacttttaatgaaaatcttaataccataacttgaaaatgtttacagga-taaacttgctactgttaaagaaatcaacttgcaaaactatttaca |
332 |
Q |
| |
|
||||||||||| |||| |||||| |||| ||||||||||||||| || |||| | | || ||||||| ||| ||||||||||||||||||||| |||| |
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| T |
12109101 |
gcatgcaacttctaatataaatctccatacgataacttgaaaatgtgtaaaggaatcagctagctactggtaaggaaatcaacttgcaaaactatataca |
12109200 |
T |
|
| Q |
333 |
acttattacaatgtcagctgtaaaatctaacctatcatgaaaagaacaaagtggctcctaactcattgaaatggttacaaaat |
415 |
Q |
| |
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|||| ||||||||||||||||||||||| |||||| |||||||| ||||||||| ||||| ||||||||||| ||||||||| |
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|
| T |
12109201 |
actttttacaatgtcagctgtaaaatcttacctataatgaaaagtacaaagtgggtcctagctcattgaaataattacaaaat |
12109283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 302 - 420
Target Start/End: Original strand, 12104402 - 12104520
Alignment:
| Q |
302 |
ttaaagaaatcaacttgcaaaactatttacaacttattacaatgtcagctgtaaaatctaacctatcatgaaaagaacaaagtggctccta---actcat |
398 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||| ||| ||||| || |||||||||| ||| ||||||||||| ||| |||| ||||| ||||| |
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| T |
12104402 |
ttaaaggaatcaa-ttgcaaaactatttacaactttttataatgtgagttgtaaaatcttacccatcatgaaaag--caatgtgggtcctaggcgctcat |
12104498 |
T |
|
| Q |
399 |
tgaaatggttacaaaatctgga |
420 |
Q |
| |
|
|||||||| |||| |||||||| |
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|
| T |
12104499 |
tgaaatggatacacaatctgga |
12104520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 569 - 624
Target Start/End: Complemental strand, 10102949 - 10102894
Alignment:
| Q |
569 |
aaaaatattgaactaaaattgcagagccctccgtgaataggactcttccaaaaact |
624 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||| |||||||||||||||||| |
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|
| T |
10102949 |
aaaaatattgaactaaatttgcagagccctcaatgaagaggactcttccaaaaact |
10102894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 570 - 624
Target Start/End: Complemental strand, 13856160 - 13856106
Alignment:
| Q |
570 |
aaaatattgaactaaaattgcagagccctccgtgaataggactcttccaaaaact |
624 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||| |||||||| ||||||||| |
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|
| T |
13856160 |
aaaatattgaactaaaattgcaaagccctctgtgaagaggactctcccaaaaact |
13856106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 191 - 234
Target Start/End: Original strand, 12104290 - 12104333
Alignment:
| Q |
191 |
tccaaagcagaattcttctgaggtgaaaagtgttctttaaaaag |
234 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||| |
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|
| T |
12104290 |
tccaaagcagaactcttctgacgtgaaaagtgttctttaaaaag |
12104333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 570 - 624
Target Start/End: Complemental strand, 10109445 - 10109391
Alignment:
| Q |
570 |
aaaatattgaactaaaattgcagagccctccgtgaataggactcttccaaaaact |
624 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| | || |||||||||||||||||| |
|
|
| T |
10109445 |
aaaaaatttaactaaaattgcagagccctccataaagaggactcttccaaaaact |
10109391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 570 - 624
Target Start/End: Original strand, 10212244 - 10212298
Alignment:
| Q |
570 |
aaaatattgaactaaaattgcagagccctccgtgaataggactcttccaaaaact |
624 |
Q |
| |
|
||||||||| ||||||||||||||||| || |||| |||||||||||||||||| |
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|
| T |
10212244 |
aaaatattgtactaaaattgcagagccttcggtgaggaggactcttccaaaaact |
10212298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 10101626 - 10101577
Alignment:
| Q |
225 |
ctttaaaaagcatgcaacttttaatgaaaatcttaataccataacttgaa |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||| ||||| |||| |
|
|
| T |
10101626 |
ctttaaaaagcatgcaacttttaatgaaaaccttcatacaataacatgaa |
10101577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 575 - 624
Target Start/End: Original strand, 10209698 - 10209747
Alignment:
| Q |
575 |
attgaactaaaattgcagagccctccgtgaataggactcttccaaaaact |
624 |
Q |
| |
|
|||||||||||||||||||||||||| | || || ||||||||||||||| |
|
|
| T |
10209698 |
attgaactaaaattgcagagccctccataaagagaactcttccaaaaact |
10209747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 9661665 - 9661713
Alignment:
| Q |
226 |
tttaaaaagcatgcaacttttaatgaaaatcttaataccataacttgaa |
274 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||| |||| |||||||||| |
|
|
| T |
9661665 |
tttaaaaagcatgcaacttttattgaaaaccttcatacgataacttgaa |
9661713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 624
Target Start/End: Complemental strand, 10106033 - 10105978
Alignment:
| Q |
569 |
aaaaatattgaactaaaattgcagagccctccgtgaataggactcttccaaaaact |
624 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| | || |||||||||||||||||| |
|
|
| T |
10106033 |
aaaaaaattgaactaaatttgcagagccctcaataaagaggactcttccaaaaact |
10105978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 10213973 - 10214017
Alignment:
| Q |
230 |
aaaagcatgcaacttttaatgaaaatcttaataccataacttgaa |
274 |
Q |
| |
|
||||||||| ||||||||||||||| ||| |||| |||||||||| |
|
|
| T |
10213973 |
aaaagcatgtaacttttaatgaaaaccttcatacgataacttgaa |
10214017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 570 - 598
Target Start/End: Original strand, 10215876 - 10215904
Alignment:
| Q |
570 |
aaaatattgaactaaaattgcagagccct |
598 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10215876 |
aaaatattgaactaaaattgcagagccct |
10215904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 12110140 - 12110188
Alignment:
| Q |
226 |
tttaaaaagcatgcaacttttaatgaaaatcttaataccataacttgaa |
274 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||| |||| ||||||||| |
|
|
| T |
12110140 |
tttaaaaagcatgcaacttttattgaaaaccttcatacagtaacttgaa |
12110188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 579 - 624
Target Start/End: Complemental strand, 45152128 - 45152083
Alignment:
| Q |
579 |
aactaaaattgcagagccctccgtgaataggactcttccaaaaact |
624 |
Q |
| |
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|||||| ||||||||||||||||| || |||||||||||||||||| |
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| T |
45152128 |
aactaatattgcagagccctccgtaaagaggactcttccaaaaact |
45152083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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