View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20779_low_11 (Length: 335)
Name: NF20779_low_11
Description: NF20779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20779_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 20693995 - 20694301
Alignment:
| Q |
19 |
ggtttccccaatatataatatgcaactcacaagacaatagacattatgctctaatctccaaaagactataatctaagacagctatttttgtaggggaatc |
118 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
20693995 |
ggtttccccaatatataatatgcaactcactagacaatagacattatgctccaatctccaaaagactataatctaagacagctattcatgtaggggaatc |
20694094 |
T |
|
| Q |
119 |
agttcttcatgcacaaagacaaagaagaaaagtgcaggaccagttgggatttaccatatctttgagtaaataattaataataagtcctttaattacnnnn |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20694095 |
agttcttcatgcacaaagacaaagaagaaaagtgcaggaccagttgggatttaccatatctttgagtaaataattaataataagtcctttaattactttt |
20694194 |
T |
|
| Q |
219 |
nnnatgtacaaggacatttaattactttatcaacctctttttgatacaatctttctatatttttgtaagttctaaccgagtgttagttgcattaatgtgg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20694195 |
tttatgtacaaggacatttaattactttatcaacctctttttgatacaatctttctatatttttgtaagttctaaccgagtgttagttgcattaatgtgg |
20694294 |
T |
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| Q |
319 |
acctatg |
325 |
Q |
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||||||| |
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| T |
20694295 |
acctatg |
20694301 |
T |
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