View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20779_low_12 (Length: 333)
Name: NF20779_low_12
Description: NF20779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20779_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 67 - 316
Target Start/End: Original strand, 35272444 - 35272692
Alignment:
| Q |
67 |
gcaaggggcatcaatgaagaaaccattcttgggaaacatgattaaagnnnnnnnnnnnnnnnncagacatgaataattttagaactgacattactaccga |
166 |
Q |
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| T |
35272444 |
gcaaggggcatcaatgaagaaaccattcttgggaaacatgattaaagaaaaaactaaaaaaa-cagacatgaatgattttagaactgacattactaccga |
35272542 |
T |
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| Q |
167 |
aattgcacatcaagaactgattaatgggtaaagaaagagcaaaatcagacatatatacataccagcaagagtttgtccattattaacttgagcttcattt |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35272543 |
aattgcacatcaagaactgattaatgggtaaagaaagagcaaaatcagacatatatacataccagcaagagtttgtccattattaacttgagcttcattt |
35272642 |
T |
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| Q |
267 |
tggaaaatctgtgcagtttccaagaatcctttcttcttgaggtaatcatg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35272643 |
tggaaaatctgtgcagtttccaagaatcctttcttcttgaggtaatcatg |
35272692 |
T |
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