View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20779_low_14 (Length: 299)

Name: NF20779_low_14
Description: NF20779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20779_low_14
NF20779_low_14
[»] chr1 (2 HSPs)
chr1 (16-144)||(50715720-50715849)
chr1 (217-288)||(50715852-50715923)
[»] chr7 (2 HSPs)
chr7 (40-277)||(29456309-29456546)
chr7 (41-123)||(7317125-7317207)
[»] chr2 (2 HSPs)
chr2 (30-122)||(6839933-6840025)
chr2 (217-275)||(6839768-6839826)
[»] chr4 (1 HSPs)
chr4 (30-123)||(31928597-31928690)
[»] chr5 (3 HSPs)
chr5 (38-123)||(26730784-26730869)
chr5 (18-119)||(10715466-10715566)
chr5 (30-83)||(39790182-39790235)
[»] chr3 (1 HSPs)
chr3 (217-273)||(55139615-55139671)


Alignment Details
Target: chr1 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 16 - 144
Target Start/End: Original strand, 50715720 - 50715849
Alignment:
Q  16 caaaaacaagaaataggccacgacctcacaatctt--aacattaggttctttatctgattaattttcaaacctctaacatatataatctctttgatttgg 113  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  50715720 caaaaacaagaaataggccacgacctcacaatcttttaacattaggttctttatctgattaattttcaaacctc-aacatatacaatctctttgatttgg 50715818  T
Q  114 tgaaggagcttgatgatgtttctgaaatatt 144  Q
    |||||||||||||||||||||| ||||||||    
T  50715819 tgaaggagcttgatgatgtttcggaaatatt 50715849  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 50715852 - 50715923
Alignment:
Q  217 tgttcatgttgcattaactttgaatacattgcatcacaccctgtcaaatactagtattaattattagttcat 288  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50715852 tgttcatgttgcattgactttgaatacattgcatcacaccctgtcaaatactagtattaattattagttcat 50715923  T

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Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 40 - 277
Target Start/End: Original strand, 29456309 - 29456546
Alignment:
Q  40 ctcacaatcttaacattaggttctttatctgattaattttcaaacctctaacatatataatctctttgatttggtgaaggagctt--gatgatgtttctg 137  Q
    |||||||||||||||||||| |||| | | ||||||||||||| ||||||   |||| || |||||| ||||||||||||||||   ||||||| || ||    
T  29456309 ctcacaatcttaacattaggctcttcagcggattaattttcaaccctctattgtatacaacctctttcatttggtgaaggagctcccgatgatgattatg 29456408  T
Q  138 aaatattccggcattcatttctttccaaatcatatgttcagttagattcactatcgttctactcagtt-atgcatataaatgttcatgttgcattaactt 236  Q
    |||||||  | ||||| |||||||||||||   || ||  |||| | |||||||| |||||||||||| |||||||| | || || ||||||||| ||||    
T  29456409 aaatattatgtcattcctttctttccaaat---atattgtgttacactcactatcattctactcagttgatgcatatcattgctcttgttgcattgactt 29456505  T
Q  237 tgaatacattgcatcacaccctgtcaaatactagtattaat 277  Q
    |||||| ||||||||||| | || ||| |||||||||||||    
T  29456506 tgaatatattgcatcacatcttgccaattactagtattaat 29456546  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 7317125 - 7317207
Alignment:
Q  41 tcacaatcttaacattaggttctttatctgattaattttcaaacctctaacatatataatctctttgatttggtgaaggagct 123  Q
    |||||||||||||| ||||||||| ||||||||| |||||||||||||||  || | ||||||||||||||||||||||||||    
T  7317125 tcacaatcttaacactaggttcttcatctgattagttttcaaacctctaatgtagacaatctctttgatttggtgaaggagct 7317207  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 122
Target Start/End: Complemental strand, 6840025 - 6839933
Alignment:
Q  30 aggccacgacctcacaatcttaacattaggttctttatctgattaattttcaaacctctaacatatataatctctttgatttggtgaaggagc 122  Q
    ||||||| ||||||||||||||||| ||||||||| ||||||||| |||||||||||||||  || |  ||||||||||||||| ||||||||    
T  6840025 aggccacaacctcacaatcttaacactaggttcttcatctgattagttttcaaacctctaatgtagacgatctctttgatttggcgaaggagc 6839933  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 275
Target Start/End: Complemental strand, 6839826 - 6839768
Alignment:
Q  217 tgttcatgttgcattaactttgaatacattgcatcacaccctgtcaaatactagtatta 275  Q
    ||||| ||||||||| ||||| |||| ||||||||||| |||| ||| |||||||||||    
T  6839826 tgttcttgttgcattgactttcaatatattgcatcacatcctgccaattactagtatta 6839768  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 31928597 - 31928690
Alignment:
Q  30 aggccacgacctcacaatcttaacattaggttctttatctgattaattttcaaacctctaacatatataatctctttgatttggtgaaggagct 123  Q
    ||||||| |||||||||| |||||| ||||||||| || |||||| |||||| ||||||||  || | |||||||||||||||| |||||||||    
T  31928597 aggccacaacctcacaatattaacactaggttcttcatttgattagttttcatacctctaatgtacacaatctctttgatttggcgaaggagct 31928690  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 38 - 123
Target Start/End: Original strand, 26730784 - 26730869
Alignment:
Q  38 acctcacaatcttaacattaggttctttatctgattaattttcaaacctctaacatatataatctctttgatttggtgaaggagct 123  Q
    |||||||||||||||||||||  |||| ||||||||| ||||||||||| |||   ||| |||||||| ||||||||| |||||||    
T  26730784 acctcacaatcttaacattagactcttcatctgattagttttcaaacctataatgcatacaatctcttagatttggtggaggagct 26730869  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 10715566 - 10715466
Alignment:
Q  18 aaaacaagaaataggccacgacctcacaatcttaacattaggttctttatctgattaattttcaaacctctaacatatataatctctttgatttggtgaa 117  Q
    |||||||||| ||| |||| |||||||||||||   |||||| |||| || || ||| |||||||||||||||  || ||||||||||||||||||| ||    
T  10715566 aaaacaagaa-tagcccacaacctcacaatcttggtattaggctcttcatttgtttagttttcaaacctctaatgtaaataatctctttgatttggttaa 10715468  T
Q  118 gg 119  Q
    ||    
T  10715467 gg 10715466  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 39790182 - 39790235
Alignment:
Q  30 aggccacgacctcacaatcttaacattaggttctttatctgattaattttcaaa 83  Q
    ||||||| |||||||||||| |||| ||||||||| ||||| ||| ||||||||    
T  39790182 aggccacaacctcacaatctaaacactaggttcttcatctggttagttttcaaa 39790235  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 55139615 - 55139671
Alignment:
Q  217 tgttcatgttgcattaactttgaatacattgcatcacaccctgtcaaatactagtat 273  Q
    ||||||||||||| | ||||| |||| |||| ||||||| ||||||| |||||||||    
T  55139615 tgttcatgttgcactgactttaaatatattgaatcacacactgtcaattactagtat 55139671  T

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