View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20779_low_15 (Length: 268)
Name: NF20779_low_15
Description: NF20779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20779_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 33628345 - 33628101
Alignment:
| Q |
19 |
caacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcgataacacaaatatcattatgaaatgcacagc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33628345 |
caacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcgataacacaaatatcattatgaaatgcacagc |
33628246 |
T |
|
| Q |
119 |
aactgctatgctttgtccagtgcttcttatatttactggaaaaatctcagttggaattagccatgttagaggactccacgacaaaccaaaacccgcagca |
218 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33628245 |
aacagctatgctttgtccagtgcttcttatatttactggaaaaatctcagttggaattagccatgttagaggactccacgacaaaccaaaacccgcagca |
33628146 |
T |
|
| Q |
219 |
tagaaacacattagtaccaataccaatattgcattgccctatgat |
263 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33628145 |
tagaaacacattagtaccaataccaatattgcattgccctttgat |
33628101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 20 - 263
Target Start/End: Complemental strand, 33623957 - 33623714
Alignment:
| Q |
20 |
aacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcgataacacaaatatcattatgaaatgcacagca |
119 |
Q |
| |
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||||||||| ||||||||||||| |||||||| | || ||||||||||||||||||||||||||||||| |||||| | |||||||||||||||| || |
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| T |
33623957 |
aacccaacccgcatagaacaaaatggccccaaagtataactggcataacatagtcaagaatgtttgcgatagcacaaagaccattatgaaatgcacaaca |
33623858 |
T |
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| Q |
120 |
actgctatgctttgtccagtgcttcttatatttactggaaaaatctcagttggaattagccatgttagaggactccacgacaaaccaaaacccgcagcat |
219 |
Q |
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|| ||||||||||||| | |||||| ||||| | || |||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||| |
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| T |
33623857 |
acagctatgctttgtcgaatgcttcctatataaatggggaaaatctcagttggaattagccatgttagagggctccacgacaaatctaaacccgcagcac |
33623758 |
T |
|
| Q |
220 |
agaaacacattagtaccaataccaatattgcattgccctatgat |
263 |
Q |
| |
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||||||| ||||||||||||| ||||||||||||||||| |||| |
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| T |
33623757 |
agaaacatattagtaccaatatcaatattgcattgccctttgat |
33623714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 20 - 258
Target Start/End: Complemental strand, 33619141 - 33618903
Alignment:
| Q |
20 |
aacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcgataacacaaatatcattatgaaatgcacagca |
119 |
Q |
| |
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||||||| ||||||||| | || ||||||||||||| |||||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||| |
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| T |
33619141 |
aacccaaaaagcatagaagacgaaggccccaaacttcatgtggcataacattgtcaagaatgtttgcgataacacaaagattattatgaattgcacagca |
33619042 |
T |
|
| Q |
120 |
actgctatgctttgtccagtgcttcttatatttactggaaaaatctcagttggaattagccatgttagaggactccacgacaaaccaaaacccgcagcat |
219 |
Q |
| |
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|| |||||||||||||| ||| ||||||| |||||||| ||||||||| ||||||| |||||||||| |||| ||| ||| |||||||||| |||| | |
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| T |
33619041 |
acagctatgctttgtcctgtggttcttatttttactgggaaaatctcacttggaataagccatgttaatggaccccatgaccaaccaaaacctgcagagt |
33618942 |
T |
|
| Q |
220 |
agaaacacattagtaccaataccaatattgcattgccct |
258 |
Q |
| |
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||||||||| ||| |||||||||| |||||||||||||| |
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| T |
33618941 |
agaaacacaatagcaccaataccactattgcattgccct |
33618903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 33609860 - 33609621
Alignment:
| Q |
19 |
caacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcgataacacaaatatcattatgaaatgcacagc |
118 |
Q |
| |
|
|||||||||||||||||||||| || || |||||||| ||||| |||||||| |||||||||||||| |||| |||||||| |||||||| || | ||| |
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| T |
33609860 |
caacccaaccagcatagaacaagaaggctccaaacttaaagtgacataacattgtcaagaatgtttgtgatagcacaaatactattatgaattgtatagc |
33609761 |
T |
|
| Q |
119 |
aactgctatgctttgtccagtgcttcttatatttactggaaaaatctcagttggaattagccatgttagaggactccacgacaaaccaaaacccgcagca |
218 |
Q |
| |
|
|| |||||||||||||| ||| |||||||||||||||| ||||||||| ||||||| |||||||||||||||| ||| ||| |||||||||| |||| |
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| T |
33609760 |
aatagctatgctttgtcctgtggttcttatatttactgggaaaatctcacttggaataagccatgttagaggaccccatgaccaaccaaaaccagcagag |
33609661 |
T |
|
| Q |
219 |
tagaaacacattagtaccaataccaatattgcattgccct |
258 |
Q |
| |
|
|| ||||| | ||| |||||||| ||||||||||| |||| |
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| T |
33609660 |
tataaacataatagcaccaatactaatattgcattcccct |
33609621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 30 - 258
Target Start/End: Complemental strand, 33596422 - 33596194
Alignment:
| Q |
30 |
gcatagaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcgataacacaaatatcattatgaaatgcacagcaactgctatgc |
129 |
Q |
| |
|
||||||||||| || || |||||||| |||||||||| ||| |||||||||||||| ||||||||||| | |||||||| || ||| |||||||||| | |
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| T |
33596422 |
gcatagaacaagaaagcaccaaacttgaagtggcatagcattgtcaagaatgtttgtgataacacaaacaagattatgaattgtacaccaactgctatac |
33596323 |
T |
|
| Q |
130 |
tttgtccagtgcttcttatatttactggaaaaatctcagttggaattagccatgttagaggactccacgacaaaccaaaacccgcagcatagaaacacat |
229 |
Q |
| |
|
|||||||||| |||| || |||| || ||||| ||| ||||||||||||| || || |||| ||| ||| |||||||||| || || |||||||| | |
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| T |
33596322 |
tttgtccagttgttctgatttttaaggggaaaatttcacttggaattagccaggtgagtggaccccaagaccaaccaaaacctgcggcgtagaaacatag |
33596223 |
T |
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| Q |
230 |
tagtaccaataccaatattgcattgccct |
258 |
Q |
| |
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|| |||||||||||| ||||||| |||| |
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| T |
33596222 |
taaaaccaataccaatgttgcatttccct |
33596194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 30 - 258
Target Start/End: Complemental strand, 33603553 - 33603325
Alignment:
| Q |
30 |
gcatagaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcgataacacaaatatcattatgaaatgcacagcaactgctatgc |
129 |
Q |
| |
|
||||||||||| || || |||||||| |||||||||| ||| |||||||||||||| ||||||||||| | |||||||| || ||| |||||||||| | |
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|
| T |
33603553 |
gcatagaacaagaaagcaccaaacttgaagtggcatagcattgtcaagaatgtttgtgataacacaaacaagattatgaattgtacaccaactgctatac |
33603454 |
T |
|
| Q |
130 |
tttgtccagtgcttcttatatttactggaaaaatctcagttggaattagccatgttagaggactccacgacaaaccaaaacccgcagcatagaaacacat |
229 |
Q |
| |
|
|||||||||| |||| || |||| || ||||| ||| ||||||||||||| || || |||| ||| ||| |||||||||| || || |||||||| | |
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|
| T |
33603453 |
tttgtccagttgttctgatttttaaggggaaaatttcacttggaattagccaggtgagtggaccccaagaccaaccaaaacctgcggcgtagaaacatag |
33603354 |
T |
|
| Q |
230 |
tagtaccaataccaatattgcattgccct |
258 |
Q |
| |
|
|| |||||||||||| ||||||| |||| |
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|
| T |
33603353 |
taaaaccaataccaatgttgcatttccct |
33603325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 258
Target Start/End: Complemental strand, 33589250 - 33589022
Alignment:
| Q |
30 |
gcatagaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcgataacacaaatatcattatgaaatgcacagcaactgctatgc |
129 |
Q |
| |
|
||||||||||| || || |||||||| |||||||||| ||| |||||||||||||| ||||||| ||| | |||||||| || ||| |||||||||| | |
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|
| T |
33589250 |
gcatagaacaagaaagcaccaaacttgaagtggcatagcattgtcaagaatgtttgtgataacataaacaagattatgaattgtacaccaactgctatac |
33589151 |
T |
|
| Q |
130 |
tttgtccagtgcttcttatatttactggaaaaatctcagttggaattagccatgttagaggactccacgacaaaccaaaacccgcagcatagaaacacat |
229 |
Q |
| |
|
|||||||||| |||| || |||| || ||||| ||| ||||||||||||| || || |||| ||| ||| |||||||||| || || |||||||| | |
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|
| T |
33589150 |
tttgtccagttgttctgatttttaaggggaaaatttcacttggaattagccaggtgagtggaccccaagaccaaccaaaacctgcggcgtagaaacatag |
33589051 |
T |
|
| Q |
230 |
tagtaccaataccaatattgcattgccct |
258 |
Q |
| |
|
|| |||||||||||| ||||||| |||| |
|
|
| T |
33589050 |
taaaaccaataccaatgttgcatttccct |
33589022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 229
Target Start/End: Complemental strand, 33563664 - 33563470
Alignment:
| Q |
35 |
gaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcgataacacaaatatcattatgaaatgcacagcaactgctatgctttgt |
134 |
Q |
| |
|
|||||| || || ||| |||||||||| |||||||| ||||||||||| || || ||||||||||| ||||||| ||||||| || |||||||||||| |
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|
| T |
33563664 |
gaacaagaaagcaccatacttcaagtgacataacattgtcaagaatgtctgagacaacacaaatatagttatgaattgcacagaaatagctatgctttgt |
33563565 |
T |
|
| Q |
135 |
ccagtgcttcttatatttactggaaaaatctcagttggaattagccatgttagaggactccacgacaaaccaaaacccgcagcatagaaacacat |
229 |
Q |
| |
|
||||| |||| || || | |||||||| ||| ||||||||| |||| |||||||| ||| ||| |||||||||| |||| ||||||||||| |
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|
| T |
33563564 |
ccagttgttctgattttcaaaggaaaaatttcacttggaattatccataatagaggaccccatgaccaaccaaaacctgcagagtagaaacacat |
33563470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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