View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20779_low_17 (Length: 250)
Name: NF20779_low_17
Description: NF20779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20779_low_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 44193017 - 44193254
Alignment:
| Q |
13 |
aatatcatataccaccacctcatcaacaacaacaaaaacataaaaacataggttcatatatctgaacatgtttgtaccnnnnnnnnnnnngttaccattt |
112 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44193017 |
aatatcatataccaccgcctcatcaacaacaacaaaaacataaaatcataggttcatatatctgaacatgtttgtaccaaaaagaaaaaagttaccattt |
44193116 |
T |
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| Q |
113 |
ttcaaagatctgggaaatgcggaattagggtttagattgtcattctgacttccagtgggttgggataatgattcaccctgacttccagtggtttgggata |
212 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44193117 |
ttcaaagatctgggaaaagcggaattagggtttagattgtcattctgacttccagtgggttgggataatgattcaccctgacttccagtggtttgggata |
44193216 |
T |
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| Q |
213 |
acaattcatcctcatcctcttcatccgatacctaaatc |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
44193217 |
acaattcatcctcatcctcttcatccgatacctaaatc |
44193254 |
T |
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