View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20779_low_18 (Length: 250)
Name: NF20779_low_18
Description: NF20779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20779_low_18 |
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| [»] scaffold1636 (1 HSPs) |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: scaffold1636 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold1636
Description:
Target: scaffold1636; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 736 - 503
Alignment:
| Q |
5 |
aagggttttgtgaagatgtcagccaactggttttctgaagtacaatgcatcaattcaattgttccatcctttgtaagatacctcaagaaa-tggtatcta |
103 |
Q |
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| T |
736 |
aagggcttggtgaagatgttagccatctggttctctgaagcacaa-gaaccaactcaatcgttccatcttttgtaagatccctcaaaaaagtgatacctc |
638 |
T |
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| Q |
104 |
acatctatatgtttgcatcttccatgcaatacaagattcttggacaacttgatagatgaactgttatcacaatagattttggtgcagctcctttgagttt |
203 |
Q |
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| T |
637 |
acatctatatgtttgcatcttccatgcaaaatagaattcttggacaacttaatagatgaactgttatcacaatagattttggtgcagctcctttgagttt |
538 |
T |
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| Q |
204 |
gatagagatgatgaagtatcttcctaagccatatt |
238 |
Q |
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| T |
537 |
gaaagagatgatgaagtatctttcttagccatatt |
503 |
T |
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Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 46430625 - 46430840
Alignment:
| Q |
1 |
cttcaagggttttgtgaagatgtcagccaactggttttctgaagtacaatgcatcaattcaattgttccatcctttgtaagatacctcaagaaatggtat |
100 |
Q |
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| T |
46430625 |
cttcaaaggtttagtaaagatgtcagccatctagttttctgaagtacaatgcaccaacttaattgttccagcttttgtaagatccctcaaaaaatgaaat |
46430724 |
T |
|
| Q |
101 |
ctaacatctatatgtttgcatcttccatgcaatacaagattcttggacaacttgatagatgaactgttatcacaatagattttggtgcagctcctttgag |
200 |
Q |
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| T |
46430725 |
ctaacatcaatgtgtttgcaccttccatgcaaaataggattctttgacagcttaatggatgaactgttgtcacagaagattttggtgcagttcctttgag |
46430824 |
T |
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| Q |
201 |
tttgatagagatgatg |
216 |
Q |
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||||| |||||||||| |
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| T |
46430825 |
tttgacagagatgatg |
46430840 |
T |
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Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 7849035 - 7849118
Alignment:
| Q |
155 |
atagatgaactgttatcacaatagattttggtgcagctcctttgagtttgatagagatgatgaagtatcttcctaagccatatt |
238 |
Q |
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| T |
7849035 |
atagatgaactgttatcacaatagattttggtgcagctcctttgagtttgatagagatgatgaagtatcttcttaagccatatt |
7849118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 7848974 - 7849036
Alignment:
| Q |
1 |
cttcaagggttttgtgaagatgtcagccaactggttttctgaagtacaatgcatcaattcaat |
63 |
Q |
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| T |
7848974 |
cttcaagggttttgtgaagatgtcagccaactggttttctgaagtacaatgcatcaattcaat |
7849036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 9938672 - 9938708
Alignment:
| Q |
95 |
tggtatctaacatctatatgtttgcatcttccatgca |
131 |
Q |
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| T |
9938672 |
tggtatctcacatctatatgtttgcatctcccatgca |
9938708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 61 - 190
Target Start/End: Complemental strand, 609697 - 609568
Alignment:
| Q |
61 |
aattgttccatcctttgtaagatacctcaagaaatggtatctaacatctatatgtttgcatcttccatgcaatacaagattcttggacaacttgatagat |
160 |
Q |
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||||||| |||| |||| ||||| |||||||||||| |||||||||||||| ||||||||||||||||||| | | ||||||| |||||||| |||||| |
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| T |
609697 |
aattgtttcatcttttgaaagatccctcaagaaatgatatctaacatctatctgtttgcatcttccatgcataataggattctttgacaacttaatagat |
609598 |
T |
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| Q |
161 |
gaactgttatcacaatagattttggtgcag |
190 |
Q |
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| T |
609597 |
gagttgttatcacaataaatcttggtgcag |
609568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 50495307 - 50495223
Alignment:
| Q |
47 |
caatgcatcaattcaattgttccatcctttgtaagatacctcaagaaatggtatctaacatctatatgtttgcatcttccatgca |
131 |
Q |
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| T |
50495307 |
caatgcaccaactcaactattccatcctttgtaaggtctctcaagaaatgatatctgacatctatatgtttgcatcttccatgca |
50495223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 42971916 - 42971819
Alignment:
| Q |
92 |
aaatggtatctaacatctatatgtttgcatcttccatgcaatacaagattcttggacaacttgatagatgaactgttatcacaatagattttggtgca |
189 |
Q |
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| T |
42971916 |
aaatggtatctaacatcaatgtgtttgcatctcccatgcatgataggattttttgacagcttaatggaagaactattatcacagtaaatcttggtgca |
42971819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 174
Target Start/End: Original strand, 30967116 - 30967216
Alignment:
| Q |
74 |
tttgtaagatacctcaagaaatggtatctaacatctatatgtttgcatcttccatgcaatacaagattcttggacaacttgatagatgaactgttatcac |
173 |
Q |
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|||||||||| ||| | || ||||||||||||||||||||||| || | |||||||||||| |||| |||| || || ||||||||||| ||||||| |
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| T |
30967116 |
tttgtaagatccctgagaaagtggtatctaacatctatatgtttacacttcccatgcaatacaggatttttgggcagtttaatagatgaactattatcac |
30967215 |
T |
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| Q |
174 |
a |
174 |
Q |
| |
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| T |
30967216 |
a |
30967216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 174
Target Start/End: Original strand, 58406 - 58494
Alignment:
| Q |
86 |
ctcaagaaatggtatctaacatctatatgtttgcatcttccatgcaatacaagattcttggacaacttgatagatgaactgttatcaca |
174 |
Q |
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|||||||| || ||||| ||||| || || |||||||||||||||| | |||||||||| | |||||||||||| ||||| ||||| |
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| T |
58406 |
ctcaagaagtgatatcttacatcaatgtgcttgcatcttccatgcatgattggattcttggagagcttgatagatgagctgttgtcaca |
58494 |
T |
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