View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20779_low_2 (Length: 653)
Name: NF20779_low_2
Description: NF20779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20779_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-175; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 9 - 332
Target Start/End: Original strand, 33680264 - 33680587
Alignment:
| Q |
9 |
gattattcttgggcattttttgcacctaactggatactctacttgtgaatgcacatgattttgaagtttcatgaagagaggtttagtaaaatcaggtaaa |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33680264 |
gattgttcttgggcattttttgcacctaactggatactctacttgtgaatgcacatgattttgaagtttcatgaagagaggtttagtaaaatcaggtaaa |
33680363 |
T |
|
| Q |
109 |
ttagagatctcgctatactattatgtgcgtgctattgagaaacttattcacatgtatggttgccgaatacatgccactatgccagtacatcacaataaag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33680364 |
ttagagatctcgctatactattatgtgcgtgctattgagaaacttattcacatgtatggttgccgaatacatgccactatgccagtacatcacaataaag |
33680463 |
T |
|
| Q |
209 |
aaagttcaaaatgaacagttctgtttgggagatggaagtggttaggagttagatacaatttcatactttcttgattgtgatcggtttgtgtacccctcca |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33680464 |
aaagttcaaaatgaacagttctgtttgggagatggaagtggttaggagttagatacaatttcatactttcttgattgtgatcggtttgtgtacccctcca |
33680563 |
T |
|
| Q |
309 |
ttccatgtgacacctgaacatttc |
332 |
Q |
| |
|
|||||||||| || |||||||||| |
|
|
| T |
33680564 |
ttccatgtgaaacatgaacatttc |
33680587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 383 - 635
Target Start/End: Original strand, 33680639 - 33680890
Alignment:
| Q |
383 |
gagttgtttttattggaaaatggggacacttaaaaaatgaatgttgattattgaaataagaaaacattttatgcagttatttttggaacagtgatgtatg |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33680639 |
gagttgtttttattggaaaatggggacacttaaaaaatgaatgttgat-attgaaataagaaaacattttatgcagttatttttggaacagtgatgtatg |
33680737 |
T |
|
| Q |
483 |
atgtaagatcatggttgatacttgatagactccggtgtaatcactcatgtgtgaggaatctaactaaatggtgattttaggtttgtatccttttgagtct |
582 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33680738 |
atgtaagatcatggttgatacttgatagactccggtgtaatcactcatgtgtgaggaatctaactaaatggtgattttaggtttgtatccttttgagtct |
33680837 |
T |
|
| Q |
583 |
tggatgttatcaacatcgtcagctagtttgaccaacaagttgtaatttgtatt |
635 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33680838 |
tggatgttatcaacatcgtcagatagtttgaccaacaagttgtaatttgtatt |
33680890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University