View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20779_low_21 (Length: 234)

Name: NF20779_low_21
Description: NF20779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20779_low_21
NF20779_low_21
[»] chr1 (5 HSPs)
chr1 (18-161)||(40978163-40978306)
chr1 (18-161)||(40967641-40967784)
chr1 (161-220)||(40978055-40978114)
chr1 (18-97)||(14266655-14266734)
chr1 (161-219)||(40967534-40967592)
[»] chr4 (11 HSPs)
chr4 (25-161)||(20444219-20444355)
chr4 (28-161)||(20451095-20451228)
chr4 (30-79)||(37068094-37068143)
chr4 (25-65)||(20431918-20431958)
chr4 (25-65)||(20476929-20476969)
chr4 (18-65)||(20462708-20462755)
chr4 (161-205)||(20279644-20279688)
chr4 (25-65)||(20440617-20440657)
chr4 (161-205)||(20444404-20444448)
chr4 (161-205)||(20451277-20451321)
chr4 (161-205)||(20477234-20477278)
[»] chr7 (1 HSPs)
chr7 (28-97)||(45483607-45483675)


Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 40978306 - 40978163
Alignment:
Q  18 actatagagccttagttttcttaagttttcggtgcgtcttaggagagctgcatatacagattggattgctttggacgacatagggttcgtagtctttggt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40978306 actatagagccttagttttcttaagttttcggtgcgtcttaggagagctgcatatacagattggattgctttggacgacatagggttcgtagtctttggt 40978207  T
Q  118 aattcaaagtcaaggttggggatctttgtgcatattgactccca 161  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  40978206 aattcaaagtcaaggttggggatctttgtgcatatcgactccca 40978163  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 40967784 - 40967641
Alignment:
Q  18 actatagagccttagttttcttaagttttcggtgcgtcttaggagagctgcatatacagattggattgctttggacgacatagggttcgtagtctttggt 117  Q
    |||| |||| ||||| |||||||  |||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||  | | | ||||||    
T  40967784 actaaagagacttagctttcttatattttcgatgcgttttaggagagttgcatatacagattggattgctttggacgacatagagtctgaaatatttggt 40967685  T
Q  118 aattcaaagtcaaggttggggatctttgtgcatattgactccca 161  Q
    | || ||||| ||||| ||||||||| ||||| || ||||||||    
T  40967684 agtttaaagttaaggtcggggatcttggtgcagatcgactccca 40967641  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 40978114 - 40978055
Alignment:
Q  161 agacagaatatgaataatcaattcgtctgagagattgcttaatcggtcctgctcttcatc 220  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40978114 agacaaaatatgaataatcaattcgtctgagagattgcttaatcggtcctgctcttcatc 40978055  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 14266734 - 14266655
Alignment:
Q  18 actatagagccttagttttcttaagttttcggtgcgtcttaggagagctgcatatacagattggattgctttggacgaca 97  Q
    ||||||||| |||||||||||||  |||||||| |||||||||||||| ||||||||| ||| |||| ||||||||||||    
T  14266734 actatagagacttagttttcttagattttcggttcgtcttaggagagcagcatatacatatttgatttctttggacgaca 14266655  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 219
Target Start/End: Complemental strand, 40967592 - 40967534
Alignment:
Q  161 agacagaatatgaataatcaattcgtctgagagattgcttaatcggtcctgctcttcat 219  Q
    ||||| |||| ||| |||||||||||||||||||| |||||||  ||| ||||||||||    
T  40967592 agacaaaatacgaaaaatcaattcgtctgagagatcgcttaatttgtcatgctcttcat 40967534  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 161
Target Start/End: Original strand, 20444219 - 20444355
Alignment:
Q  25 agccttagttttcttaagttttcggtgcgtcttaggagagctgcatatacagattggattgctttggacgacatagggttcgtagtctttggtaattcaa 124  Q
    ||||||||||||||||  |||||||||||||||||||||||  ||| |||| ||| |||| |||||||| ||  |||||  | | ||| |||||||| ||    
T  20444219 agccttagttttcttatattttcggtgcgtcttaggagagcaacatttacaaatttgatttctttggacaactcagggtctgaaatctctggtaattgaa 20444318  T
Q  125 agtcaaggttggggatctttgtgcatattgactccca 161  Q
    ||| ||||||||| ||||| ||||| || ||||||||    
T  20444319 agtgaaggttgggaatcttggtgcagatcgactccca 20444355  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 161
Target Start/End: Original strand, 20451095 - 20451228
Alignment:
Q  28 cttagttttcttaagttttcggtgcgtcttaggagagctgcatatacagattggattgctttggacgacatagggttcgtagtctttggtaattcaaagt 127  Q
    |||||||||||||  |||||||||||||||||||||||  ||| |||| ||| |||| |||||||  ||| ||| |  | | ||| |||||||| |||||    
T  20451095 cttagttttcttatattttcggtgcgtcttaggagagcaacatttacaaatttgatttctttggataacacaggatctgaattctctggtaattgaaagt 20451194  T
Q  128 caaggttggggatctttgtgcatattgactccca 161  Q
     |||||| || ||||| ||||| || ||||||||    
T  20451195 gaaggttaggaatcttggtgcagatcgactccca 20451228  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 37068094 - 37068143
Alignment:
Q  30 tagttttcttaagttttcggtgcgtcttaggagagctgcatatacagatt 79  Q
    |||||||||||  ||||||||||||||||| |||||||||||||| ||||    
T  37068094 tagttttcttatattttcggtgcgtcttagaagagctgcatatacggatt 37068143  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 20431918 - 20431958
Alignment:
Q  25 agccttagttttcttaagttttcggtgcgtcttaggagagc 65  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  20431918 agccttagttttcttatattttcggtgcgtcttaggagagc 20431958  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 20476929 - 20476969
Alignment:
Q  25 agccttagttttcttaagttttcggtgcgtcttaggagagc 65  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  20476929 agccttagttttcttatattttcggtgcgtcttaggagagc 20476969  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 20462708 - 20462755
Alignment:
Q  18 actatagagccttagttttcttaagttttcggtgcgtcttaggagagc 65  Q
    |||||| ||||||||||||||||  ||||||||||||||||| |||||    
T  20462708 actataaagccttagttttcttatattttcggtgcgtcttagcagagc 20462755  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 20279644 - 20279688
Alignment:
Q  161 agacagaatatgaataatcaattcgtctgagagattgcttaatcg 205  Q
    ||||| |||||||  |||||| |||||||||||||||||||||||    
T  20279644 agacaaaatatgacaaatcaaatcgtctgagagattgcttaatcg 20279688  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 20440617 - 20440657
Alignment:
Q  25 agccttagttttcttaagttttcggtgcgtcttaggagagc 65  Q
    ||||||||||||||||   ||||||||||||||||||||||    
T  20440617 agccttagttttcttatactttcggtgcgtcttaggagagc 20440657  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 20444404 - 20444448
Alignment:
Q  161 agacagaatatgaataatcaattcgtctgagagattgcttaatcg 205  Q
    ||||| |||||||  |||||| |||||||||||||||||||||||    
T  20444404 agacaaaatatgacaaatcaaatcgtctgagagattgcttaatcg 20444448  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 20451277 - 20451321
Alignment:
Q  161 agacagaatatgaataatcaattcgtctgagagattgcttaatcg 205  Q
    ||||| |||||||  |||||| |||||||||||||||||||||||    
T  20451277 agacaaaatatgacaaatcaaatcgtctgagagattgcttaatcg 20451321  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 20477234 - 20477278
Alignment:
Q  161 agacagaatatgaataatcaattcgtctgagagattgcttaatcg 205  Q
    ||||| |||||||  |||||| |||||||||||||||||||||||    
T  20477234 agacaaaatatgacaaatcaaatcgtctgagagattgcttaatcg 20477278  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 45483675 - 45483607
Alignment:
Q  28 cttagttttcttaagttttcggtgcgtcttaggagagctgcatatacagattggattgctttggacgaca 97  Q
    ||||||||||||| | |||||||  ||||||||||||| ||||||||| ||| |||| ||||||||||||    
T  45483675 cttagttttctta-gatttcggttagtcttaggagagcagcatatacatatttgatttctttggacgaca 45483607  T

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