View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20779_low_22 (Length: 233)
Name: NF20779_low_22
Description: NF20779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20779_low_22 |
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| [»] scaffold0068 (2 HSPs) |
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Alignment Details
Target: scaffold0068 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 30042 - 30148
Alignment:
| Q |
56 |
cagcacatatttgccacaacaagttttcttgctttaaactctaactacgtaggatttagtaggttttaacactaccatgatgaagttacgtacattattg |
155 |
Q |
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||||| ||||||||| || ||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30042 |
cagcatatatttgccgcagcaagttttcttgctttaaactctgactatgtatgatttagtaggttttaacactaccatgatgaagttacgtacattattg |
30141 |
T |
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| Q |
156 |
atatagt |
162 |
Q |
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||||||| |
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| T |
30142 |
atatagt |
30148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 26898 - 26972
Alignment:
| Q |
133 |
tgatgaagttacgtacattattgatatagtgaaactagagaagttcaaatgcacatactatacaaatcaagtaaaa |
208 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
26898 |
tgatgaagttatgtacattattgatatagtgaaactagagtggttcaaatgcacatacta-acaaatcaagtaaaa |
26972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 21683868 - 21683762
Alignment:
| Q |
56 |
cagcacatatttgccacaacaagttttcttgctttaaactctaactacgtaggatttagtaggttttaacactaccatgatgaagttacgtacattattg |
155 |
Q |
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||||| ||||||||| || ||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21683868 |
cagcatatatttgccgcagcaagttttcttgctttaaactctgactatgtatgatttagtaggttttaacactaccatgatgaagttacgtacattattg |
21683769 |
T |
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| Q |
156 |
atatagt |
162 |
Q |
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||||||| |
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| T |
21683768 |
atatagt |
21683762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 42727214 - 42727119
Alignment:
| Q |
112 |
tagtaggttttaacactaccatgatgaagttacgtacattattgatatagtgaaactagagaagttcaaatgcacatactatacaaatcaagtaaaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||| |
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| T |
42727214 |
tagtaggttttaacactaccatgatgaagttacgtacattattgatatagtgaaactatagtggttcaaatgcacatacta-acaaatcaagtaaaa |
42727119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 21687012 - 21686938
Alignment:
| Q |
133 |
tgatgaagttacgtacattattgatatagtgaaactagagaagttcaaatgcacatactatacaaatcaagtaaaa |
208 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
21687012 |
tgatgaagttatgtacattattgatatagtgaaactagagtggttcaaatgcacatacta-acaaatcaagtaaaa |
21686938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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