View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20779_low_24 (Length: 206)
Name: NF20779_low_24
Description: NF20779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20779_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 3e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 7 - 184
Target Start/End: Original strand, 8672280 - 8672456
Alignment:
| Q |
7 |
ggagcagagacggtcgaaatatgatttagtgtttggggagaatnnnnnnnntggcatgaacacaaccaatcaaatgtggttttcgatctttgtagattta |
106 |
Q |
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| T |
8672280 |
ggaggagagacggtcgaaatatgatttagtgtttggggagaataaaaaaa-tggcatgcacacaaccaatcaaacgtggtttttgatctttgtagattta |
8672378 |
T |
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| Q |
107 |
atttacgattttctattgagttggttcagttttaatttatacgcatctatataataatgtgtaatcagattatgaggc |
184 |
Q |
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| T |
8672379 |
gtttacgattttccattgagttggttcagttttaatttatacgcatctatataataacgtgtaatcagattatgaggc |
8672456 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 23344765 - 23344724
Alignment:
| Q |
101 |
gatttaatttacgatttt-ctattgagttggttcagttttaa |
141 |
Q |
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| T |
23344765 |
gatttaatttacgatttttctattgagttggttcagttttaa |
23344724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 23382270 - 23382311
Alignment:
| Q |
101 |
gatttaatttacga-ttttctattgagttggttcagttttaa |
141 |
Q |
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| T |
23382270 |
gatttaatttacgacttttctattgagttggttcagttttaa |
23382311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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