View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20779_low_4 (Length: 424)
Name: NF20779_low_4
Description: NF20779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20779_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 19 - 408
Target Start/End: Complemental strand, 44475115 - 44474726
Alignment:
| Q |
19 |
cagagagagtatatttttaatcgtgcttgttttaatactattttactgtgattttctatttgatcaaattcaagtatatatgatcatctcttggtcgata |
118 |
Q |
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| T |
44475115 |
cagagagagtatatttttaatcgtgcttgttttaatactattttactgtgattttctatttgatcaaattcaagtatatatgatcatctcttggtcgata |
44475016 |
T |
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| Q |
119 |
tttagtaggttttttaataagggatatttggtagttcatgcatacaacttttatattggtacaacgtttctctaagctagcctaaattcaatcacacttg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44475015 |
tttagtaggttttttaataagggatatttggtagttcatgcatacaacttttatattggtacaacgtttctctaagctagcctaaattcaatcacacttg |
44474916 |
T |
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| Q |
219 |
atccattcttcagaaatatctgtatcgctttcataatttagaaaggtaaaataagtcatttttctttactcctttacaaaatcatccatctagaatctag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44474915 |
atccattcttcagaaatatctgtatcgctttcataatttagaaaggaaaaataagtcatttttctttactcctttacaaaatcatccatctagaatctag |
44474816 |
T |
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| Q |
319 |
attactcccatacaaaatcatccatctaaacatagccatagtgtatttattggtataatgtgtagtttgaatttgttgtataaattttgt |
408 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44474815 |
attactcccttacaaaatcatccatctaaacatagccatagtgtatttattggtataatgtgtagtttgaatttgttgtataaattttgt |
44474726 |
T |
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