View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20779_low_5 (Length: 415)

Name: NF20779_low_5
Description: NF20779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20779_low_5
NF20779_low_5
[»] chr3 (3 HSPs)
chr3 (1-162)||(13218068-13218229)
chr3 (1-110)||(54180905-54181014)
chr3 (39-162)||(45172776-45172894)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-162)||(239480-239641)
[»] chr8 (10 HSPs)
chr8 (319-391)||(3500294-3500366)
chr8 (317-390)||(3158705-3158778)
chr8 (321-390)||(2795056-2795125)
chr8 (321-390)||(2876591-2876660)
chr8 (321-390)||(3144155-3144224)
chr8 (339-390)||(2891057-2891108)
chr8 (321-390)||(2882641-2882710)
chr8 (321-389)||(14388739-14388807)
chr8 (321-389)||(3495145-3495213)
chr8 (339-387)||(4415473-4415521)


Alignment Details
Target: chr3 (Bit Score: 141; Significance: 8e-74; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 13218229 - 13218068
Alignment:
Q  1 ccacgcccgctgaatagaaacattaaactaaaagcccatacaaaatgggcacctaagnnnnnnngaccatatgcagataatgaggaaccataagactgaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  13218229 ccacgcccgctgaatagaaacattaaactaaaagcccatacaaaatgggcacctaagaaaaaaagaccatatgcagataatgaggaaccataagactgaa 13218130  T
Q  101 ttacctgggatgcctgcgcccataagaaatcgcggagccacccattaatggtaatcgaactc 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13218129 ttacctgggatgcctgcgcccataagaaatcgcggagccacccattaatggtaatcgaactc 13218068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 54180905 - 54181014
Alignment:
Q  1 ccacgcccgctgaatagaaacattaaactaaaagcccatacaaaatgggcacctaagnnnnnnngaccatatgcagataatgaggaaccataagactgaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  54180905 ccacgcccgctgaatagaaacattaaactaaaagcccatacaaaatgggcacctaagaaaaaaagaccatatgcagataatgaggaaccataagactgaa 54181004  T
Q  101 ttacctggga 110  Q
    ||||||||||    
T  54181005 ttacctggga 54181014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 39 - 162
Target Start/End: Original strand, 45172776 - 45172894
Alignment:
Q  39 tacaaaatgggcacctaagnnnnnnngaccatatgcagataatgaggaaccataagactgaattacctgggatgcctgcgcccataagaaatcgcggagc 138  Q
    |||||||||| ||||||||       |||||||||||||| |||||||||||||||||||     |  ||||||||||| ||||||||||||| ||||||    
T  45172776 tacaaaatggccacctaagaaaaaaagaccatatgcagattatgaggaaccataagactg-----ctcgggatgcctgctcccataagaaatcacggagc 45172870  T
Q  139 cacccattaatggtaatcgaactc 162  Q
    |||   ||||||||| ||||||||    
T  45172871 cacttgttaatggtactcgaactc 45172894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 239480 - 239641
Alignment:
Q  1 ccacgcccgctgaatagaaacattaaactaaaagcccatacaaaatgggcacctaagnnnnnnngaccatatgcagataatgaggaaccataagactgaa 100  Q
    ||||| |||||||||| |||||||||||| || ||||| |||||||| |||||||||       ||||||||||||||||||| ||||||||||||||||    
T  239480 ccacggccgctgaataaaaacattaaactgaaggcccagacaaaatgagcacctaagaaaaaaagaccatatgcagataatgaagaaccataagactgaa 239579  T
Q  101 ttacctgggatgcctgcgcccataagaaatcgcggagccacccattaatggtaatcgaactc 162  Q
    | || || |||||||| ||||| |||||||| || |||||||||||||| ||||| ||||||    
T  239580 tgacttgcgatgcctgtgcccacaagaaatctcgaagccacccattaatcgtaatggaactc 239641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 319 - 391
Target Start/End: Original strand, 3500294 - 3500366
Alignment:
Q  319 tgataatacaaggctggataaggaggaaccactgccatttcctgctgagtctctaatgaaccaaaagcatatc 391  Q
    |||| |||||||| || |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  3500294 tgattatacaaggttgaataaggaggaaccactgccatttcctgcggagtgtctaatgaaccaaaagcatatc 3500366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 3158778 - 3158705
Alignment:
Q  317 cctgataatacaaggctggataaggaggaaccactgccatttcctgctgagtctctaatgaaccaaaagcatat 390  Q
    ||||||||||||||| || || ||||||||||||||||| ||||||| ||| |||| |||||||||||||||||    
T  3158778 cctgataatacaaggttgaattaggaggaaccactgccaattcctgccgagactctgatgaaccaaaagcatat 3158705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 390
Target Start/End: Complemental strand, 2795125 - 2795056
Alignment:
Q  321 ataatacaaggctggataaggaggaaccactgccatttcctgctgagtctctaatgaaccaaaagcatat 390  Q
    |||||||| || || || ||||||||||||||||| ||||||||||| |||| |||||||||||||||||    
T  2795125 ataatacacggttgaattaggaggaaccactgccaattcctgctgagactctgatgaaccaaaagcatat 2795056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 390
Target Start/End: Original strand, 2876591 - 2876660
Alignment:
Q  321 ataatacaaggctggataaggaggaaccactgccatttcctgctgagtctctaatgaaccaaaagcatat 390  Q
    |||||||| || || || ||||||||||||||||| ||||||||||| |||| |||||||||||||||||    
T  2876591 ataatacacggttgaattaggaggaaccactgccaattcctgctgagactctgatgaaccaaaagcatat 2876660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 390
Target Start/End: Complemental strand, 3144224 - 3144155
Alignment:
Q  321 ataatacaaggctggataaggaggaaccactgccatttcctgctgagtctctaatgaaccaaaagcatat 390  Q
    |||||||| || || || ||||||||||||||||| ||||||||||| |||| |||||||||||||||||    
T  3144224 ataatacacggttgaattaggaggaaccactgccaattcctgctgagactctgatgaaccaaaagcatat 3144155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 390
Target Start/End: Original strand, 2891057 - 2891108
Alignment:
Q  339 aggaggaaccactgccatttcctgctgagtctctaatgaaccaaaagcatat 390  Q
    ||||||||||||||||| ||||||||||| |||| |||||||||||||||||    
T  2891057 aggaggaaccactgccaattcctgctgagactctgatgaaccaaaagcatat 2891108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 390
Target Start/End: Original strand, 2882641 - 2882710
Alignment:
Q  321 ataatacaaggctggataaggaggaaccactgccatttcctgctgagtctctaatgaaccaaaagcatat 390  Q
    |||| |||||| || || ||||||||||||||||| ||||||| ||| |||| |||||||||||||||||    
T  2882641 ataacacaaggttgaattaggaggaaccactgccaattcctgccgagactctgatgaaccaaaagcatat 2882710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 389
Target Start/End: Original strand, 14388739 - 14388807
Alignment:
Q  321 ataatacaaggctggataaggaggaaccactgccatttcctgctgagtctctaatgaaccaaaagcata 389  Q
    ||||||||||| || || |||||| |||||||||| ||||||||||| |||  ||||||||||||||||    
T  14388739 ataatacaaggttgaattaggagggaccactgccaattcctgctgagactcagatgaaccaaaagcata 14388807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 389
Target Start/End: Original strand, 3495145 - 3495213
Alignment:
Q  321 ataatacaaggctggataaggaggaaccactgccatttcctgctgagtctctaatgaaccaaaagcata 389  Q
    ||||||||||| || || |||||| |||||||||| ||||||| ||| |||  ||||||||||||||||    
T  3495145 ataatacaaggttgaattaggagggaccactgccaattcctgccgagactcggatgaaccaaaagcata 3495213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 387
Target Start/End: Complemental strand, 4415521 - 4415473
Alignment:
Q  339 aggaggaaccactgccatttcctgctgagtctctaatgaaccaaaagca 387  Q
    ||||||||||| ||||| ||||||||||| |||| ||||||||||||||    
T  4415521 aggaggaaccattgccagttcctgctgagactctcatgaaccaaaagca 4415473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University