View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20779_low_7 (Length: 392)

Name: NF20779_low_7
Description: NF20779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20779_low_7
NF20779_low_7
[»] chr3 (2 HSPs)
chr3 (212-392)||(13218226-13218406)
chr3 (337-392)||(54180853-54180908)
[»] scaffold0002 (1 HSPs)
scaffold0002 (212-392)||(239303-239483)
[»] chr7 (2 HSPs)
chr7 (319-392)||(45273434-45273507)
chr7 (324-392)||(45269877-45269945)
[»] chr4 (1 HSPs)
chr4 (309-391)||(28243343-28243425)
[»] chr8 (3 HSPs)
chr8 (49-146)||(3159007-3159103)
chr8 (49-148)||(2876281-2876380)
chr8 (49-117)||(2795384-2795452)


Alignment Details
Target: chr3 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 212 - 392
Target Start/End: Complemental strand, 13218406 - 13218226
Alignment:
Q  212 actgcaataattcttgctaagaagaatgcccacgttgtggcaattccacccagaaggtaatgggttactcctacagcacgtccctgtacaatgctcaagg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13218406 actgcaataattcttgctaagaagaatgcccacgttgtggcaattccacccagaaggtaatgggttactcctacagcacgtccctgtacaatgctcaagg 13218307  T
Q  312 ctctaggctgagtagcaggagcaacttttaatttattatgagcccaaacgatggattcgataagttcttgccaataaccac 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13218306 ctctaggctgagtagcaggagcaacttttaatttattatgagcccaaacgatggattcaataagttcttgccaataaccac 13218226  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 337 - 392
Target Start/End: Original strand, 54180853 - 54180908
Alignment:
Q  337 ttttaatttattatgagcccaaacgatggattcgataagttcttgccaataaccac 392  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  54180853 ttttaatttattatgagcccaaacgatggattcaataagttcttgccaataaccac 54180908  T

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Target: scaffold0002 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 212 - 392
Target Start/End: Original strand, 239303 - 239483
Alignment:
Q  212 actgcaataattcttgctaagaagaatgcccacgttgtggcaattccacccagaaggtaatgggttactcctacagcacgtccctgtacaatgctcaagg 311  Q
    |||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  239303 actgcaataattctcgctaagaagaatgcccatgtcgtggcaattccacccagaaggtaatgggttactcctacagcacgtccttgtataatgctcaagg 239402  T
Q  312 ctctaggctgagtagcaggagcaacttttaatttattatgagcccaaacgatggattcgataagttcttgccaataaccac 392  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||||    
T  239403 ctctaggctgagtagcaggagcaacttttaatttgttatgagcccaaacgatagattcaatgagttcttgccaataaccac 239483  T

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Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 319 - 392
Target Start/End: Original strand, 45273434 - 45273507
Alignment:
Q  319 ctgagtagcaggagcaacttttaatttattatgagcccaaacgatggattcgataagttcttgccaataaccac 392  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||    
T  45273434 ctgagtaacaggagcaacttttaatttattatgagcccaaacgatggattcaataagtttatgccaataaccac 45273507  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 324 - 392
Target Start/End: Original strand, 45269877 - 45269945
Alignment:
Q  324 tagcaggagcaacttttaatttattatgagcccaaacgatggattcgataagttcttgccaataaccac 392  Q
    ||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  45269877 tagcaggagaaccttttaatttattatgagcccaaacgatggattctataagttcttgccaataaccac 45269945  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 391
Target Start/End: Complemental strand, 28243425 - 28243343
Alignment:
Q  309 aggctctaggctgagtagcaggagcaacttttaatttattatgagcccaaacgatggattcgataagttcttgccaataacca 391  Q
    |||||||||| ||||||| ||||||| ||| ||||||||||||| |||||| || |||||| | ||||| ||| | |||||||    
T  28243425 aggctctaggttgagtagtaggagcagcttataatttattatgaccccaaatgacggattcaacaagtttttggcgataacca 28243343  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 3159103 - 3159007
Alignment:
Q  49 ttgccaaaccaggaagaagacaacgaaacaacaattttaattatgtcaagaaattcaatgcaggtttgatgatcaatacagataataaattattaaca 146  Q
    |||| |||||||||||| | |||| || |||||||  || |||||||||||||||||||  ||||||||  ||| |||| ||||||||||||| ||||    
T  3159103 ttgctaaaccaggaagatggcaaccaa-caacaatcatatttatgtcaagaaattcaatttaggtttgacaatcgatactgataataaattatgaaca 3159007  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 148
Target Start/End: Original strand, 2876281 - 2876380
Alignment:
Q  49 ttgccaaaccaggaagaagacaacgaaacaacaattttaattatgtcaagaaattcaatgcaggtttgatgatcaatacagataataaattattaacaca 148  Q
    |||| |||||||||||| | |||||||||||| ||  || ||||||||||||||| |||  ||||||||  ||  |||||||| |||||| || ||||||    
T  2876281 ttgctaaaccaggaagatggcaacgaaacaactatcatatttatgtcaagaaatttaatttaggtttgacaatagatacagattataaataatgaacaca 2876380  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 2795452 - 2795384
Alignment:
Q  49 ttgccaaaccaggaagaagacaacgaaacaacaattttaattatgtcaagaaattcaatgcaggtttga 117  Q
    |||| |||||||||||| | |||| ||| ||||||  || |||||||||||||||||||  ||||||||    
T  2795452 ttgctaaaccaggaagatggcaaccaaataacaatcatatttatgtcaagaaattcaatttaggtttga 2795384  T

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