View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20779_low_8 (Length: 384)

Name: NF20779_low_8
Description: NF20779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20779_low_8
NF20779_low_8
[»] chr1 (10 HSPs)
chr1 (224-369)||(26816538-26816683)
chr1 (275-355)||(47235514-47235594)
chr1 (275-355)||(7444951-7445031)
chr1 (275-355)||(24980816-24980896)
chr1 (275-355)||(24989574-24989654)
chr1 (275-333)||(9433830-9433888)
chr1 (275-355)||(27262737-27262818)
chr1 (275-355)||(52698469-52698549)
chr1 (275-354)||(3996544-3996623)
chr1 (277-355)||(26478073-26478151)
[»] chr8 (12 HSPs)
chr8 (92-216)||(7848721-7848847)
chr8 (113-213)||(7853016-7853118)
chr8 (275-355)||(32615872-32615952)
chr8 (275-337)||(29912175-29912237)
chr8 (275-355)||(34085356-34085435)
chr8 (275-343)||(42964821-42964889)
chr8 (275-355)||(13244707-13244787)
chr8 (275-355)||(13521701-13521781)
chr8 (275-355)||(13611236-13611316)
chr8 (275-331)||(24585862-24585918)
chr8 (276-342)||(28626646-28626712)
chr8 (288-350)||(41235827-41235889)
[»] chr7 (5 HSPs)
chr7 (279-355)||(11662999-11663075)
chr7 (277-355)||(12837897-12837975)
chr7 (277-354)||(47188457-47188534)
chr7 (279-334)||(30424883-30424938)
chr7 (275-334)||(24423470-24423529)
[»] chr5 (3 HSPs)
chr5 (276-352)||(8611756-8611832)
chr5 (275-337)||(19608812-19608874)
chr5 (275-352)||(1863140-1863217)
[»] chr6 (2 HSPs)
chr6 (275-355)||(30326710-30326790)
chr6 (275-337)||(24396785-24396847)
[»] chr2 (4 HSPs)
chr2 (275-355)||(11074497-11074577)
chr2 (275-355)||(40141943-40142023)
chr2 (275-337)||(37426534-37426596)
chr2 (283-355)||(38788767-38788840)
[»] chr4 (6 HSPs)
chr4 (275-355)||(21240162-21240242)
chr4 (275-337)||(37626977-37627039)
chr4 (275-337)||(51834767-51834829)
chr4 (279-333)||(54639699-54639753)
chr4 (282-355)||(48051717-48051790)
chr4 (275-355)||(24157759-24157838)
[»] chr3 (3 HSPs)
chr3 (275-355)||(31732068-31732149)
chr3 (275-354)||(15496132-15496211)
chr3 (277-337)||(24487773-24487833)


Alignment Details
Target: chr1 (Bit Score: 118; Significance: 4e-60; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 224 - 369
Target Start/End: Complemental strand, 26816683 - 26816538
Alignment:
Q  224 atttggtaagatattttaggaacaaataaactaaagtgatattataccatgattcaacacattgaaacatcacaaagcaactttaactacatgaaagtta 323  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  26816683 atttgataagatattttaggaacaaataaactaaagtgatattataccgtgattcaacacattgaaacatcacaaagcaatttaaactacatgaaagtta 26816584  T
Q  324 tcaattgtttctatatttgaatacttaacaagggaatgacacttgt 369  Q
    |||||||||||||| ||||||| ||||||||||| |||||||||||    
T  26816583 tcaattgtttctatgtttgaattcttaacaagggcatgacacttgt 26816538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 275 - 355
Target Start/End: Original strand, 47235514 - 47235594
Alignment:
Q  275 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 355  Q
    |||||||| |||||||||| | ||||||||||||  ||||||||||||||||||||||||||| ||||||| |||||||||    
T  47235514 attcaacaaattgaaacattaaaaagcaactttatttacatgaaagttatcaattgtttctatttttgaattcttaacaag 47235594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 355
Target Start/End: Original strand, 7444951 - 7445031
Alignment:
Q  275 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 355  Q
    |||||||||||||||| |||| |||||||||||   ||||||||||||||||||| ||||||| || ||||  ||||||||    
T  7444951 attcaacacattgaaatatcaaaaagcaactttttatacatgaaagttatcaattatttctattttagaatctttaacaag 7445031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 24980896 - 24980816
Alignment:
Q  275 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 355  Q
    |||||||||||||||||| || |||||||||| | |||||| ||| ||||||||||||| ||| |||| || |||||||||    
T  24980896 attcaacacattgaaacaacaaaaagcaacttaatctacataaaaattatcaattgtttatatttttggatccttaacaag 24980816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 24989654 - 24989574
Alignment:
Q  275 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 355  Q
    |||||||||||||||||| || |||||||||| | |||||| ||| ||||||||||||| ||| |||| || |||||||||    
T  24989654 attcaacacattgaaacaacaaaaagcaacttaatctacataaaaattatcaattgtttatatttttggatccttaacaag 24989574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 333
Target Start/End: Original strand, 9433830 - 9433888
Alignment:
Q  275 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgttt 333  Q
    ||||||||||||||||||||| | |||||||||  ||| ||| ||||||||||||||||    
T  9433830 attcaacacattgaaacatcaaagagcaactttttctatatgcaagttatcaattgttt 9433888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 27262818 - 27262737
Alignment:
Q  275 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttcta-tatttgaatacttaacaag 355  Q
    |||||||||||| |||||| | |||| || |||  |||||| |||||||||||||||||||| | ||||||| |||||||||    
T  27262818 attcaacacattaaaacattaaaaagtaattttttctacataaaagttatcaattgtttctattttttgaatccttaacaag 27262737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 355
Target Start/End: Original strand, 52698469 - 52698549
Alignment:
Q  275 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 355  Q
    |||||||||||||||| | || ||| |||||||  || ||| |||||||||||||||||| || ||| ||| |||||||||    
T  52698469 attcaacacattgaaataacaaaaaacaactttttctccataaaagttatcaattgtttccattttttaatccttaacaag 52698549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 354
Target Start/End: Complemental strand, 3996623 - 3996544
Alignment:
Q  275 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaa 354  Q
    |||||||| ||||||| |||| ||| ||| |||   ||||||||||||||||||| |||  |||||||||| ||||||||    
T  3996623 attcaacatattgaaatatcaaaaaacaatttttcttacatgaaagttatcaattattttcatatttgaattcttaacaa 3996544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 355
Target Start/End: Original strand, 26478073 - 26478151
Alignment:
Q  277 tcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 355  Q
    |||||||||| |||||||| |||  ||||||  |||||| ||| |||||||||||| |||| ||| ||| |||||||||    
T  26478073 tcaacacattaaaacatcaaaaaataactttttctacataaaaattatcaattgttcctattttttaattcttaacaag 26478151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 92 - 216
Target Start/End: Complemental strand, 7848847 - 7848721
Alignment:
Q  92 agctcagattaagggagtgtttgttaagtgtgtttagtgttgttgctgcttgcaacacacgctttgtacc--ttgcctatataaaggctaggctcttaat 189  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||  |||||||||||||||||| |||||||||    
T  7848847 agctcagattaagggagtgtttgttaagtgtgtttagtgtagttgctgctagcaacacatgctttgtacctattgcctatataaaggctaagctcttaat 7848748  T
Q  190 gaaataacattgagtggattaccacat 216  Q
    |||||||||  ||||| ||||||||||    
T  7848747 gaaataacagagagtgtattaccacat 7848721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 113 - 213
Target Start/End: Complemental strand, 7853118 - 7853016
Alignment:
Q  113 tgttaagtgtgtttagtgttgttgctgcttgcaacacacgctttgtacc--ttgcctatataaaggctaggctcttaatgaaataacattgagtggatta 210  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||  ||||| ||||    
T  7853118 tgttaagtgtgtttagtgtagttgctgcttgcaacacacgctttgtacctattgcctatataaaggctaagctcttaatgaaataacagagagtgtatta 7853019  T
Q  211 cca 213  Q
    |||    
T  7853018 cca 7853016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 275 - 355
Target Start/End: Original strand, 32615872 - 32615952
Alignment:
Q  275 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 355  Q
    ||||||||||||||||||| | ||| ||||||||  ||||||||||||||||||||||||||| |||| ||  ||||||||    
T  32615872 attcaacacattgaaacattaaaaaacaactttatttacatgaaagttatcaattgtttctatttttggatctttaacaag 32615952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 29912175 - 29912237
Alignment:
Q  275 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctat 337  Q
    ||||||| ||||||||||||| |||||||||||| ||||||| ||||||||| || |||||||    
T  29912175 attcaactcattgaaacatcaaaaagcaactttatctacatggaagttatcatttatttctat 29912237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 275 - 355
Target Start/End: Original strand, 34085356 - 34085435
Alignment:
Q  275 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 355  Q
    ||||||||||||||| ||||| |||| ||||| | || ||||||||||||||||| ||||||| |||| || |||||||||    
T  34085356 attcaacacattgaatcatcaaaaagtaactt-atctccatgaaagttatcaattatttctatttttggatccttaacaag 34085435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 42964821 - 42964889
Alignment:
Q  275 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttga 343  Q
    ||||||||||||||||||||| |||  ||||||  |||||||||||||||||||| |||| || |||||    
T  42964821 attcaacacattgaaacatcaaaaaataactttttctacatgaaagttatcaattatttccatttttga 42964889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 355
Target Start/End: Original strand, 13244707 - 13244787
Alignment:
Q  275 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 355  Q
    |||||| | ||||||| |||| ||| ||| |||  |||||| ||||||||||||||||||||| |||||||  ||||||||    
T  13244707 attcaatatattgaaatatcaaaaaacaattttgtctacataaaagttatcaattgtttctatttttgaatcattaacaag 13244787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 13521781 - 13521701
Alignment:
Q  275 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 355  Q
    |||| |||||||||||||| | |||  || ||||  ||||||||||||||||||| ||||||| |||| || |||||||||    
T  13521781 attctacacattgaaacattaaaaaataattttatttacatgaaagttatcaattatttctatttttgtatccttaacaag 13521701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 13611316 - 13611236
Alignment:
Q  275 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 355  Q
    |||| |||||||||||||| | |||  || ||||  ||||||||||||||||||| ||||||| |||| || |||||||||    
T  13611316 attctacacattgaaacattaaaaaataattttatttacatgaaagttatcaattatttctatttttgtatccttaacaag 13611236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 331
Target Start/End: Original strand, 24585862 - 24585918
Alignment:
Q  275 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgt 331  Q
    |||||||||||| |||||||| |||||||  |||  |||||||||||||||||||||    
T  24585862 attcaacacattaaaacatcaaaaagcaatcttatatacatgaaagttatcaattgt 24585918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 342
Target Start/End: Complemental strand, 28626712 - 28626646
Alignment:
Q  276 ttcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttg 342  Q
    ||||| |||||||||||||| ||| ||||||||  ||||||||| ||| ||||| ||||||| ||||    
T  28626712 ttcaatacattgaaacatcaaaaaacaactttatttacatgaaacttaacaattatttctatttttg 28626646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 350
Target Start/End: Complemental strand, 41235889 - 41235827
Alignment:
Q  288 aaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatactta 350  Q
    |||||||| ||| |||||||  |||||||||| |||||||||||||| || ||||||| ||||    
T  41235889 aaacatcaaaaaacaactttttctacatgaaatttatcaattgtttccatttttgaatcctta 41235827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 279 - 355
Target Start/End: Complemental strand, 11663075 - 11662999
Alignment:
Q  279 aacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 355  Q
    ||||||||||||||||  |||||||| ||  |||||||||||||||||||||||||||| ||||||| | |||||||    
T  11663075 aacacattgaaacatcgaaaagcaacgttttctacatgaaagttatcaattgtttctatttttgaattcctaacaag 11662999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 355
Target Start/End: Complemental strand, 12837975 - 12837897
Alignment:
Q  277 tcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 355  Q
    |||| |||||||||||| | |||||||||| | |||||| ||| |||||||||||||||||  |||||| |||||||||    
T  12837975 tcaagacattgaaacattaaaaagcaacttaatctacataaaatttatcaattgtttctattcttgaatccttaacaag 12837897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 354
Target Start/End: Original strand, 47188457 - 47188534
Alignment:
Q  277 tcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaa 354  Q
    |||||||||| ||| |||| |||| ||||||  |||||| |||||||| |||||||||||| ||||||| ||||||||    
T  47188457 tcaacacattaaaatatcaaaaagtaactttttctacataaaagttattaattgtttctatttttgaatccttaacaa 47188534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 334
Target Start/End: Original strand, 30424883 - 30424938
Alignment:
Q  279 aacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttc 334  Q
    ||||||||||||||||| |||| ||||||  |||||||||||||| ||||||||||    
T  30424883 aacacattgaaacatcaaaaagaaactttttctacatgaaagttagcaattgtttc 30424938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 24423470 - 24423529
Alignment:
Q  275 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttc 334  Q
    |||||||||||||||||| || ||| |||||||  |||||||||||| ||| ||||||||    
T  24423470 attcaacacattgaaacaccaaaaaacaactttttctacatgaaagtcatcgattgtttc 24423529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 276 - 352
Target Start/End: Complemental strand, 8611832 - 8611756
Alignment:
Q  276 ttcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaac 352  Q
    |||||||||||||||||||| |||||||||||  |||||||||| |||||||||||||| |  ||||||| ||||||    
T  8611832 ttcaacacattgaaacatcaaaaagcaactttttctacatgaaaattatcaattgtttccaattttgaatccttaac 8611756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 19608812 - 19608874
Alignment:
Q  275 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctat 337  Q
    ||||||||||||||||||| | |||| ||||||  |||||| ||| ||||||||| |||||||    
T  19608812 attcaacacattgaaacattaaaaagtaactttttctacataaaaattatcaattatttctat 19608874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 352
Target Start/End: Original strand, 1863140 - 1863217
Alignment:
Q  275 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaac 352  Q
    ||||||||||||||||  | | |||| ||||||| |||||| ||| || | |||| ||||||||||||||| ||||||    
T  1863140 attcaacacattgaaagtttaaaaagtaactttatctacataaaacttgtaaattatttctatatttgaatccttaac 1863217  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 355
Target Start/End: Original strand, 30326710 - 30326790
Alignment:
Q  275 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 355  Q
    ||||||||||||||||||||| | | |||||||  ||||||||||||||||||||||| | || ||| ||| |||||||||    
T  30326710 attcaacacattgaaacatcaaagaacaactttttctacatgaaagttatcaattgttcccatttttaaatccttaacaag 30326790  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 24396847 - 24396785
Alignment:
Q  275 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctat 337  Q
    |||||| |||||||||||| | ||| ||||||||  || ||||||||||||||||||||||||    
T  24396847 attcaaaacattgaaacattaaaaaacaactttatttatatgaaagttatcaattgtttctat 24396785  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 11074577 - 11074497
Alignment:
Q  275 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 355  Q
    ||||||||||||||||||| | |||||||||||  || |||| |||||||| |||||||| || ||||||| |||||||||    
T  11074577 attcaacacattgaaacataaaaaagcaactttttctgcatggaagttatctattgtttccatttttgaatccttaacaag 11074497  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 40142023 - 40141943
Alignment:
Q  275 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 355  Q
    ||||||| |||||||||| || |||||||||||| ||||||||||||||| | |||||||||| |||  || |||||||||    
T  40142023 attcaactcattgaaacaccaaaaagcaactttatctacatgaaagttataatttgtttctatttttttatccttaacaag 40141943  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 37426596 - 37426534
Alignment:
Q  275 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctat 337  Q
    |||||||||||||||| |||| ||||||| |||  |||||||||||||||  |||||||||||    
T  37426596 attcaacacattgaaatatcaaaaagcaattttttctacatgaaagttatggattgtttctat 37426534  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 355
Target Start/End: Original strand, 38788767 - 38788840
Alignment:
Q  283 cattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttcta-tatttgaatacttaacaag 355  Q
    |||| |||||||| |||| ||||||  ||||||||||||| ||||||||||||| | ||||||| |||||||||    
T  38788767 cattaaaacatcaaaaagtaactttttctacatgaaagttgtcaattgtttctattttttgaatccttaacaag 38788840  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 275 - 355
Target Start/End: Original strand, 21240162 - 21240242
Alignment:
Q  275 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 355  Q
    |||||||||||||||| || | ||| |||||||  |||| |||||||||||||||||||| || ||| ||| |||||||||    
T  21240162 attcaacacattgaaatattaaaaaacaactttttctacgtgaaagttatcaattgtttccatttttaaatccttaacaag 21240242  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 37626977 - 37627039
Alignment:
Q  275 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctat 337  Q
    |||||||||||| |||||| | |||| ||||||  |||||| |||||||||||||||||||||    
T  37626977 attcaacacatttaaacattaaaaagtaactttttctacataaaagttatcaattgtttctat 37627039  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 51834829 - 51834767
Alignment:
Q  275 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctat 337  Q
    ||||||| | |||||||| || |||||||||||| ||||||||||||||||| || |||||||    
T  51834829 attcaactcgttgaaacaccaaaaagcaactttatctacatgaaagttatcatttatttctat 51834767  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 333
Target Start/End: Complemental strand, 54639753 - 54639699
Alignment:
Q  279 aacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgttt 333  Q
    |||| |||||||||||| |||||||||||  ||||||||||| ||||||||||||    
T  54639753 aacaaattgaaacatcaaaaagcaactttttctacatgaaagctatcaattgttt 54639699  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 355
Target Start/End: Original strand, 48051717 - 48051790
Alignment:
Q  282 acattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 355  Q
    ||||||||||| || |||| ||||||  |||||| ||| ||||||||| ||||||| ||||||| |||||||||    
T  48051717 acattgaaacaacaaaaagtaactttttctacataaaatttatcaattatttctatttttgaatccttaacaag 48051790  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 24157838 - 24157759
Alignment:
Q  275 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 355  Q
    |||||||||||| |||||||| ||||||||||| | |  |||||||||||||||| ||| ||| |||| || |||||||||    
T  24157838 attcaacacattaaaacatcaaaaagcaacttt-attctatgaaagttatcaattatttttatttttggattcttaacaag 24157759  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 31732149 - 31732068
Alignment:
Q  275 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttcta-tatttgaatacttaacaag 355  Q
    |||||||| |||||||||||| |||||||||||  | ||||||||||||| |||| |||| | | ||||||| |||||||||    
T  31732149 attcaacatattgaaacatcaaaaagcaactttttcaacatgaaagttatgaattatttccattttttgaatccttaacaag 31732068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 354
Target Start/End: Complemental strand, 15496211 - 15496132
Alignment:
Q  275 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaa 354  Q
    |||||||| ||||||  |||| ||||||||||| |  |||||||||||||||||| ||| ||| || |||| ||||||||    
T  15496211 attcaacatattgaattatcaaaaagcaacttttaacacatgaaagttatcaattatttatattttggaatccttaacaa 15496132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 337
Target Start/End: Original strand, 24487773 - 24487833
Alignment:
Q  277 tcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctat 337  Q
    |||||| ||| |||||||| |||  ||||||  |||||| |||||||||||||||||||||    
T  24487773 tcaacatattaaaacatcaaaaattaactttttctacataaaagttatcaattgtttctat 24487833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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