View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20779_low_9 (Length: 384)
Name: NF20779_low_9
Description: NF20779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20779_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 368
Target Start/End: Original strand, 12929286 - 12929625
Alignment:
| Q |
19 |
aaaagaagaagttggagaaaatctactgatgccatgtacaaatagcatatcaataacgaaatggattggaaagttgagttgtagcgcaaaaggttatata |
118 |
Q |
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| T |
12929286 |
aaaagaagaatttggagaaaatctactgatgtcatgtacaaatagcatatcaataacgaaatggattggaaagttgagttgtagcgcaaaaggttatata |
12929385 |
T |
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| Q |
119 |
tttggtggattaagaaaacgatttgtagggattaaaagcaaagagtagcatgtatacattacatggacaggtattatttaaaccttcaannnnnnnacag |
218 |
Q |
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| T |
12929386 |
tttggtggattaagaaaacgatttgtagagattaaaagcaaagagtagcatgtataca------ggacaggtattatttaaaccttcaatttttttacag |
12929479 |
T |
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| Q |
219 |
aaaattgtttgttatttgttgacaaattgaaactatttaattactttgataaaatgtattaaaattaactatattaaaacatttatctttccaaaaataa |
318 |
Q |
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| T |
12929480 |
aaagttgtttgttatttgttgacaagttgaaactat----ttactttgataaaatgtattaaaattaactatattaaaacatttatctttccaaaaataa |
12929575 |
T |
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| Q |
319 |
taataatgaagaaataccttgaaactgctctgggcatggttcctctgtgg |
368 |
Q |
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| T |
12929576 |
taataatgaagaaataccttgaaactgctctgggcatggttcctctgtgg |
12929625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 362
Target Start/End: Original strand, 12918611 - 12918717
Alignment:
| Q |
258 |
attactttgataaaatgtattaaaattaa-ctatattaaaacatttatctttccaaaaataataataatg-aagaaataccttgaaactgctctgggcat |
355 |
Q |
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| T |
12918611 |
attacattgatcaaatgtatcaagattaaactacaataaaatatgtatctttccaaaaacaataataatgaaagaaataccttgaaatttctccgggcat |
12918710 |
T |
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| Q |
356 |
ggttcct |
362 |
Q |
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| T |
12918711 |
ggttcct |
12918717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 222 - 362
Target Start/End: Complemental strand, 21116179 - 21116039
Alignment:
| Q |
222 |
attgtttgttatttgttgacaaattgaaactatttaattactttgataaaatgtattaaaatt-aactatattaaaacatttatctttccaaaaataata |
320 |
Q |
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| T |
21116179 |
attgtttgttatttgttgacaaattgaaactat----ttactttgataaaatgtattaaaattaaactatatt-aaacatttatctttccaaaaataata |
21116085 |
T |
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| Q |
321 |
ataatgaaga----aataccttgaaactgctctgggcatggttcct |
362 |
Q |
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| T |
21116084 |
ataataatgaaatgaataccttgaaactgctctaggcttggttcct |
21116039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 63 - 152
Target Start/End: Complemental strand, 21116296 - 21116207
Alignment:
| Q |
63 |
gcatatcaataacgaaatggattggaaagttgagttgtagcgcaaaaggttatatatttggtggattaagaaaacgatttgtagggatta |
152 |
Q |
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| T |
21116296 |
gcatgtcaataacaaaatggattgggaagttgagttgtagcgcaaaagtttatacatttggtggattaagaaaatgatttgtaggtatta |
21116207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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