View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2077_low_2 (Length: 397)
Name: NF2077_low_2
Description: NF2077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2077_low_2 |
 | |
|
| [»] scaffold0197 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 373
Target Start/End: Complemental strand, 24860647 - 24860293
Alignment:
| Q |
19 |
taactctcttagcatgaatagcgcaaaggttagtatcctcaaagagtccaacgagataagcttcagcagcttcttgaagagcggaaacagcgctactctg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24860647 |
taactctcttagcatgaatagcgcaaagatttgtatcttcaaagagtccaacgagataagcttcagcagcttcttgaagagcagaaacagcgctactctg |
24860548 |
T |
|
| Q |
119 |
gaaacggagatctgttttgaaatcttgagcgatttcacgaacgagacgttggaatggaagttttcggatgagaagctctgtgcttttttggtacttgcgg |
218 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24860547 |
gaaacggagatcggttttgaaatcttgagcgatttcacgaacgagacgttggaatggaagttttcggatgagaagctctgtgcttttttggtacttgcgg |
24860448 |
T |
|
| Q |
219 |
atttcgcgaagtgcgacggttccgggacggaaacggtgaggtttcttcactccgccggtggctggagcggatttccgggcggcttttgttgctagctgct |
318 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24860447 |
atttcgcgaagtgcaacggttccgggacggaaacggtgaggtttcttcactccgccggtggctggagcggatttccgggcggcttttgttgctagctgct |
24860348 |
T |
|
| Q |
319 |
tccttggtgcttttcctccggtggatttgcgagctgtttgcttggtacgtgccat |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
24860347 |
tccttggtgcttttcctccggtggatttgcgagctgtttgctttgtacgagccat |
24860293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 30 - 373
Target Start/End: Complemental strand, 34748845 - 34748502
Alignment:
| Q |
30 |
gcatgaatagcgcaaaggttagtatcctcaaagagtccaacgagataagcttcagcagcttcttgaagagcggaaacagcgctactctggaaacggagat |
129 |
Q |
| |
|
|||||||| || || |||||||||||||||||||| |||||||||||||| ||||| |||||||| || || || || ||| |||||||||||||||| |
|
|
| T |
34748845 |
gcatgaatggcacagaggttagtatcctcaaagagaccaacgagataagcctcagccgcttcttgcagcgccgacacggcggagctctggaaacggagat |
34748746 |
T |
|
| Q |
130 |
ctgttttgaaatcttgagcgatttcacgaacgagacgttggaatggaagttttcggatgagaagctctgtgcttttttggtacttgcggatttcgcgaag |
229 |
Q |
| |
|
| || |||||||| |||||||| |||||||| ||||| ||||| || ||||| |||||||| || || ||||| || |||||||| ||||| || || || |
|
|
| T |
34748745 |
cagtcttgaaatcctgagcgatctcacgaaccagacgctggaaggggagtttgcggatgaggagttcggtgctcttctggtacttacggatctcacgtag |
34748646 |
T |
|
| Q |
230 |
tgcgacggttccgggacggaaacggtgaggtttcttcactccgccggtggctggagcggatttccgggcggcttttgttgctagctgcttccttggtgct |
329 |
Q |
| |
|
||||||||||| || | |||||||||||||||||||||||| |||||||| ||||| ||||| || ||||||||||| ||||| ||||||||||| ||| |
|
|
| T |
34748645 |
agcgacggttcctggtctgaaacggtgaggtttcttcactccaccggtggccggagcagatttgcgagcggcttttgtggctagttgcttccttggagct |
34748546 |
T |
|
| Q |
330 |
tttcctccggtggatttgcgagctgtttgcttggtacgtgccat |
373 |
Q |
| |
|
|| ||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
34748545 |
ttacctccagtggatttgcgagcggtttgcttggtacgtgccat |
34748502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 176
Target Start/End: Original strand, 44771102 - 44771153
Alignment:
| Q |
125 |
gagatctgttttgaaatcttgagcgatttcacgaacgagacgttggaatgga |
176 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
44771102 |
gagatcggttttgaaatcctgagcgatttcacgaacaagacgttggaatgga |
44771153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 53290832 - 53290720
Alignment:
| Q |
24 |
ctcttagcatgaatagcgcaaaggttagtatcctcaaagagtccaacgagataagcttcagcagcttcttgaagagcggaaacagcgctactctggaaac |
123 |
Q |
| |
|
|||||||||||||| | |||||||||||||| ||||| | ||||| |||||||||||| | ||| ||||||||| |||||| || | || ||||| | |
|
|
| T |
53290832 |
ctcttagcatgaatggtacaaaggttagtatcttcaaacaaaccaacaagataagcttcaacgactttttgaagagcagaaacaacgttgctatggaacc |
53290733 |
T |
|
| Q |
124 |
ggagatctgtttt |
136 |
Q |
| |
|
|||||||||||| |
|
|
| T |
53290732 |
tgagatctgtttt |
53290720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 374
Target Start/End: Complemental strand, 40044824 - 40044756
Alignment:
| Q |
306 |
gttgctagctgcttccttggtgcttttcctccggtggatttgcgagctgtttgcttggtacgtgccatc |
374 |
Q |
| |
|
||||| || |||||||||||||| ||||| || || || || ||||| ||||||||||||||||||||| |
|
|
| T |
40044824 |
gttgcaagttgcttccttggtgcctttccacctgttgacttacgagcagtttgcttggtacgtgccatc |
40044756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 40036137 - 40036062
Alignment:
| Q |
19 |
taactctcttagcatgaatagcgcaaaggttagtatcctcaaagagtccaacgagataagcttcagcagcttcttg |
94 |
Q |
| |
|
|||||| ||| ||||| ||||| || | |||||| ||||||||||| ||||| ||||| ||||||||||| ||||| |
|
|
| T |
40036137 |
taactcgcttggcatggatagcacacaagttagtgtcctcaaagagaccaacaagatatgcttcagcagcctcttg |
40036062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 40045445 - 40045370
Alignment:
| Q |
19 |
taactctcttagcatgaatagcgcaaaggttagtatcctcaaagagtccaacgagataagcttcagcagcttcttg |
94 |
Q |
| |
|
|||||| ||| ||||| |||||||| | |||||| ||||||||||| ||||| ||||| || |||||||| ||||| |
|
|
| T |
40045445 |
taactcgcttggcatggatagcgcacaagttagtgtcctcaaagagaccaacaagatatgcctcagcagcctcttg |
40045370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 183; Significance: 7e-99; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 19 - 373
Target Start/End: Complemental strand, 21317675 - 21317321
Alignment:
| Q |
19 |
taactctcttagcatgaatagcgcaaaggttagtatcctcaaagagtccaacgagataagcttcagcagcttcttgaagagcggaaacagcgctactctg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||| ||||| | ||||| |||||||||||||| |||||||||||||| |||||||| || ||||| |
|
|
| T |
21317675 |
taactctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagcttcagccgcttcttgaagagcagaaacagcactgctctg |
21317576 |
T |
|
| Q |
119 |
gaaacggagatctgttttgaaatcttgagcgatttcacgaacgagacgttggaatggaagttttcggatgagaagctctgtgcttttttggtacttgcgg |
218 |
Q |
| |
|
||| | |||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||| || |||||||| ||||| || |||||||||||| |
|
|
| T |
21317575 |
gaatctgagatcggttttgaaatcctgagcgatttcacgaacaagacgttggaatggaagttttcttatcagaagctcagtgctcttctggtacttgcgg |
21317476 |
T |
|
| Q |
219 |
atttcgcgaagtgcgacggttccgggacggaaacggtgaggtttcttcactccgccggtggctggagcggatttccgggcggcttttgttgctagctgct |
318 |
Q |
| |
|
||||| ||||| || ||||||||||||||||||||||| || ||||||||||| ||||| || ||||| |||||||| |||||||| || || || || | |
|
|
| T |
21317475 |
atttcacgaagcgccacggttccgggacggaaacggtgtggcttcttcactcctccggtcgccggagctgatttccgtgcggctttggtggcgagttgtt |
21317376 |
T |
|
| Q |
319 |
tccttggtgcttttcctccggtggatttgcgagctgtttgcttggtacgtgccat |
373 |
Q |
| |
|
| | ||| |||||||| |||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
21317375 |
tgcgtggggcttttccgccggtggatttgcgtgctgtttgtttggtacgtgccat |
21317321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 19 - 373
Target Start/End: Original strand, 3929988 - 3930342
Alignment:
| Q |
19 |
taactctcttagcatgaatagcgcaaaggttagtatcctcaaagagtccaacgagataagcttcagcagcttcttgaagagcggaaacagcgctactctg |
118 |
Q |
| |
|
||||||||||||||||||| || ||||| || ||||| ||||| | ||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
3929988 |
taactctcttagcatgaatggcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagcagcttcttgaagagcagaaacagcactactctg |
3930087 |
T |
|
| Q |
119 |
gaaacggagatctgttttgaaatcttgagcgatttcacgaacgagacgttggaatggaagttttcggatgagaagctctgtgcttttttggtacttgcgg |
218 |
Q |
| |
|
|| || ||||| ||||||||||| ||||||||||||||||| | | ||||||||||||||| | |||||||| || ||||| || || ||||||||| |
|
|
| T |
3930088 |
aaatcgaagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagttcagtgctcttctgatacttgcgg |
3930187 |
T |
|
| Q |
219 |
atttcgcgaagtgcgacggttccgggacggaaacggtgaggtttcttcactccgccggtggctggagcggatttccgggcggcttttgttgctagctgct |
318 |
Q |
| |
|
|| || ||||||||||| ||||| |||||||| | ||| |||||||| || || ||||| || || || ||||| | |||||||| || || || || | |
|
|
| T |
3930188 |
atctcacgaagtgcgactgttcctggacggaatctgtgtggtttctttacaccaccggttgccggtgctgattttcttgcggctttggtggcgagttgtt |
3930287 |
T |
|
| Q |
319 |
tccttggtgcttttcctccggtggatttgcgagctgtttgcttggtacgtgccat |
373 |
Q |
| |
|
||| ||| |||||||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
3930288 |
tccgtggggcttttcctccggtggattttcgtgctgtttgtttggtacgtgccat |
3930342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 3928636 - 3928858
Alignment:
| Q |
19 |
taactctcttagcatgaatagcgcaaaggttagtatcctcaaagagtccaacgagataagcttcagcagcttcttgaagagcggaaacagcgctactctg |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||| || |||| ||||| | ||||| | | | |||||||| |||||||||||| ||||||||||| |||| |
|
|
| T |
3928636 |
taactctcttagcatgaatagcacaaagattcatatcttcaaacaaaccaacaatacacgcttcagcgatttcttgaagagcagaaacagcgctgatctg |
3928735 |
T |
|
| Q |
119 |
gaaacggagatctgttttgaaatcttgagcgatttcacgaacgagacgttggaatggaagttttcggatgagaagctctgtgcttttttggtacttgcgg |
218 |
Q |
| |
|
||| |||||||| ||||||||||| |||||||||||| |||| | | || ||| |||||||| | ||||||||||| ||| | ||||| ||||| | | |
|
|
| T |
3928736 |
gaatcggagatcagttttgaaatcctgagcgatttcatgaaccaatcttttgaaaggaagtttcctaatgagaagctcagtgatcttttgatacttcctg |
3928835 |
T |
|
| Q |
219 |
atttcgcgaagtgcgacggttcc |
241 |
Q |
| |
|
||||| || | |||||| ||||| |
|
|
| T |
3928836 |
atttcacgcaatgcgactgttcc |
3928858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 19 - 373
Target Start/End: Complemental strand, 31112 - 30759
Alignment:
| Q |
19 |
taactctcttagcatgaatagcgcaaaggttagtatcctcaaagagtccaacgagataagcttcagcagcttcttgaagagcggaaacagcgctactctg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||| ||||| | ||||| ||||||||||||||||||||||||||||| |||||||| || ||||| |
|
|
| T |
31112 |
taactctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctctg |
31013 |
T |
|
| Q |
119 |
gaaacggagatctgttttgaaatcttgagcgatttcacgaacgagacgttggaatggaagttttcggatgagaagctctgtgcttttttggtacttgcgg |
218 |
Q |
| |
|
||| | ||||| ||||||||||| ||||||||||||||||| |||||||||||| ||||||||| || |||||||| ||||| || |||||||||||| |
|
|
| T |
31012 |
gaatctgagataggttttgaaatcctgagcgatttcacgaacaagacgttggaat-gaagttttcttatcagaagctcagtgctcttctggtacttgcgg |
30914 |
T |
|
| Q |
219 |
atttcgcgaagtgcgacggttccgggacggaaacggtgaggtttcttcactccgccggtggctggagcggatttccgggcggcttttgttgctagctgct |
318 |
Q |
| |
|
||||| ||||| || ||||||||||||||||||||||| || ||||||||||| ||||| || ||||| |||||||| |||||||| || || || || | |
|
|
| T |
30913 |
atttcacgaagcgccacggttccgggacggaaacggtgtggcttcttcactcctccggtcgccggagctgatttccgtgcggctttggtggcgagttgtt |
30814 |
T |
|
| Q |
319 |
tccttggtgcttttcctccggtggatttgcgagctgtttgcttggtacgtgccat |
373 |
Q |
| |
|
| | ||| |||||||| |||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
30813 |
tgcgtggggcttttccgccggtggatttgcgtgctgtttgtttggtacgtgccat |
30759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 373
Target Start/End: Complemental strand, 12531593 - 12531239
Alignment:
| Q |
19 |
taactctcttagcatgaatagcgcaaaggttagtatcctcaaagagtccaacgagataagcttcagcagcttcttgaagagcggaaacagcgctactctg |
118 |
Q |
| |
|
|||| |||||||||||||| || || || |||||||| ||||| | ||||| ||||||||||||||||||||||||||||| |||||||| || || || |
|
|
| T |
12531593 |
taaccctcttagcatgaatggcacagagattagtatcttcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttg |
12531494 |
T |
|
| Q |
119 |
gaaacggagatctgttttgaaatcttgagcgatttcacgaacgagacgttggaatggaagttttcggatgagaagctctgtgcttttttggtacttgcgg |
218 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| || | ||||||||||| || | || |||||||| ||||| || |||||||||||| |
|
|
| T |
12531493 |
gaatcggagatctgttttgaaatcttgagcgatttcacgaacaagcctctggaatggaagcttccttataagaagctcggtgctcttctggtacttgcgg |
12531394 |
T |
|
| Q |
219 |
atttcgcgaagtgcgacggttccgggacggaaacggtgaggtttcttcactccgccggtggctggagcggatttccgggcggcttttgttgctagctgct |
318 |
Q |
| |
|
|| || |||||||| || ||||| |||||||| | ||| || ||||| ||||| ||||| || ||||| ||||||||||| ||||| || || ||||||| |
|
|
| T |
12531393 |
atctcacgaagtgcaacagttcctggacggaatctgtgtggcttcttgactcctccggttgccggagcagatttccgggcagctttagtggcaagctgct |
12531294 |
T |
|
| Q |
319 |
tccttggtgcttttcctccggtggatttgcgagctgtttgcttggtacgtgccat |
373 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12531293 |
tccttggtgcttttccgccggtggatttgcgagctgtttgcttggtacgagccat |
12531239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 373
Target Start/End: Original strand, 12547026 - 12547380
Alignment:
| Q |
19 |
taactctcttagcatgaatagcgcaaaggttagtatcctcaaagagtccaacgagataagcttcagcagcttcttgaagagcggaaacagcgctactctg |
118 |
Q |
| |
|
|||| |||||||||||||| || || || |||||||| ||||| | ||||| ||||||||||||||||||||||||||||| |||||||| || || || |
|
|
| T |
12547026 |
taaccctcttagcatgaatggcacagagattagtatcttcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttg |
12547125 |
T |
|
| Q |
119 |
gaaacggagatctgttttgaaatcttgagcgatttcacgaacgagacgttggaatggaagttttcggatgagaagctctgtgcttttttggtacttgcgg |
218 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| || | ||||||||||| || | || |||||||| ||||| || |||||||||||| |
|
|
| T |
12547126 |
gaatcggagatctgttttgaaatcttgagcgatttcacgaacaagcctctggaatggaagcttccttataagaagctcggtgctcttctggtacttgcgg |
12547225 |
T |
|
| Q |
219 |
atttcgcgaagtgcgacggttccgggacggaaacggtgaggtttcttcactccgccggtggctggagcggatttccgggcggcttttgttgctagctgct |
318 |
Q |
| |
|
|| || |||||||| || ||||| |||||||| | ||| || ||||| ||||| ||||| || ||||| ||||||||||| ||||| || || ||||||| |
|
|
| T |
12547226 |
atctcacgaagtgcaacagttcctggacggaatctgtgtggcttcttgactcctccggttgccggagcagatttccgggcagctttagtggcaagctgct |
12547325 |
T |
|
| Q |
319 |
tccttggtgcttttcctccggtggatttgcgagctgtttgcttggtacgtgccat |
373 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12547326 |
tccttggtgcttttccgccggtggatttgcgagctgtttgcttggtacgagccat |
12547380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 372
Target Start/End: Original strand, 9866684 - 9867038
Alignment:
| Q |
19 |
taactctcttagcatgaatagcgcaaaggttagtatcctcaaagagtccaacgagataagcttcagcagcttcttgaagagcggaaacagcgctactctg |
118 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||| | ||||| ||||| ||| |||||||||||||||||| |||||| | ||||||| |
|
|
| T |
9866684 |
taactctcttagcatgaatagcacaaaggttagtatcttcaaacaaaccaacaagatagtctttagcagcttcttgaagagcagaaacatcactactcta |
9866783 |
T |
|
| Q |
119 |
gaaacggagatctgttttgaaatcttgagcgatttcacga-acgagacgttggaatggaagttttcggatgagaagctctgtgcttttttggtact--tg |
215 |
Q |
| |
|
||| | ||||| || |||||||| | ||| || | | | || | || || ||||| || | | |||||||| |||| |||||||||| | |
|
|
| T |
9866784 |
gaacctcagatcagtcttgaaatccttcgcgtttccctcagatcagtctctgaaacggaagcttcctta--agaagctcaatgctcttttggtactctta |
9866881 |
T |
|
| Q |
216 |
cggatttcgcgaagtgcgacggttccgggacggaaacggtgaggtttcttcactccgccggtggctggagcggatttccgggcggcttttgttgctagct |
315 |
Q |
| |
|
||||| || ||||| || |||||||| |||||||||||||| || ||||||||||| || || || ||||| |||||||| || |||||||| || |||| |
|
|
| T |
9866882 |
cggatctcacgaagcgcaacggttccaggacggaaacggtgtggcttcttcactcctcccgttgccggagctgatttccgagcagcttttgtggccagct |
9866981 |
T |
|
| Q |
316 |
gcttccttggtgcttttcctccggtggatttgcgagctgtttgcttggtacgtgcca |
372 |
Q |
| |
|
||| | ||||||||| || ||||||||||||||||| ||||| ||||||| ||||| |
|
|
| T |
9866982 |
tctttcatggtgctttaccgccggtggatttgcgagccgtttgtttggtacatgcca |
9867038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 9870082 - 9870003
Alignment:
| Q |
19 |
taactctcttagcatgaatagcgcaaaggttagtatcctcaaagagtccaacgagataagcttcagcagcttcttgaaga |
98 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||| | ||| | ||||| | |||||||||| |||||||||||||| |
|
|
| T |
9870082 |
taactctcttagcatgaatagcgcaaagattaatatcttaaaacaaaccaacaaaataagcttcaacagcttcttgaaga |
9870003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 9894744 - 9894642
Alignment:
| Q |
19 |
taactctcttagcatgaatagcgcaaaggttagtatcctcaaagagtccaacgagataagcttcagcagcttcttgaagagcggaaacagcgctactctg |
118 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||| ||||| | | ||| | | |||||||| || ||||||||| ||| |||||||| |||||||| |
|
|
| T |
9894744 |
taactcacttagcatgaatagcgcaaatattagtatcttcaaacaaactaacaaaacaagcttcaacaacttcttgaacagcagaaacagcactactctg |
9894645 |
T |
|
| Q |
119 |
gaa |
121 |
Q |
| |
|
||| |
|
|
| T |
9894644 |
gaa |
9894642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 38735618 - 38735501
Alignment:
| Q |
19 |
taactctcttagcatgaatagcgcaaaggttagtatcctcaaagagtccaacgagataagcttcagcagcttcttgaagagcggaaacagcgctactctg |
118 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||| ||||| | ||||| |||||| ||||| ||| ||||||||| ||||||||| | || || |
|
|
| T |
38735618 |
taaccctcttagcatgaatagtacaaaggttagtatcttcaaacaaaccaacaagataaacttcaatgactttttgaagagcagaaacagcgttgctatg |
38735519 |
T |
|
| Q |
119 |
gaaacggagatctgtttt |
136 |
Q |
| |
|
||| | |||||||||||| |
|
|
| T |
38735518 |
gaacctgagatctgtttt |
38735501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 269
Target Start/End: Complemental strand, 9869946 - 9869866
Alignment:
| Q |
189 |
agaagctctgtgcttttttggtacttgcggatttcgcgaagtgcgacggttccgggacggaaacggtgaggtttcttcact |
269 |
Q |
| |
|
|||||||| ||||| || |||||||| ||||| || ||||| || |||||||| ||| ||||| ||| |||||||||||| |
|
|
| T |
9869946 |
agaagctcagtgctcttctggtacttacggatctcacgaagagcaacggttccatgacagaaacagtgtggtttcttcact |
9869866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 373
Target Start/End: Complemental strand, 13576449 - 13576095
Alignment:
| Q |
19 |
taactctcttagcatgaatagcgcaaaggttagtatcctcaaagagtccaacgagataagcttcagcagcttcttgaagagcggaaacagcgctactctg |
118 |
Q |
| |
|
|||| ||||||||||||||||| ||||| || ||||||||||| | ||||| ||||||||||||||||||||||||||||| |||||||| || || || |
|
|
| T |
13576449 |
taaccctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttg |
13576350 |
T |
|
| Q |
119 |
gaaacggagatctgttttgaaatcttgagcgatttcacgaacgagacgttggaatggaagttttcggatgagaagctctgtgcttttttggtacttgcgg |
218 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||| ||||| | | |||||||||||| || | ||||||||||| ||||| || || ||||||||| |
|
|
| T |
13576349 |
aaaacggagatccgttttgaaatcctgagcaatttctcgaaccaatctttggaatggaagcttccttatgagaagctcggtgctcttctgatacttgcgg |
13576250 |
T |
|
| Q |
219 |
atttcgcgaagtgcgacggttccgggacggaaacggtgaggtttcttcactccgccggtggctggagcggatttccgggcggcttttgttgctagctgct |
318 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||||||| || || ||||||||||| |||||||| |||||||||||||| ||||||||||| || || || | |
|
|
| T |
13576249 |
atttcacgaagagcgacggttccaggacggaaacgatgtggcttcttcactcctccggtggccggagcggatttccgagcggcttttgtggcgagttgtt |
13576150 |
T |
|
| Q |
319 |
tccttggtgcttttcctccggtggatttgcgagctgtttgcttggtacgtgccat |
373 |
Q |
| |
|
| | |||||||||||| |||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
13576149 |
tgcgtggtgcttttccgccggtggatttgcgggctgtttgtttggtacgtgccat |
13576095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 373
Target Start/End: Original strand, 34579050 - 34579295
Alignment:
| Q |
128 |
atctgttttgaaatcttgagcgatttcacgaacgagacgttggaatggaagttttcggatgagaagctctgtgcttttttggtacttgcggatttcgcga |
227 |
Q |
| |
|
|||||| ||||||| ||||| ||||||||||| ||||| |||||||||||||| || || | ||| || || | || || ||||| || || || ||| |
|
|
| T |
34579050 |
atctgtcttgaaattctgagcaatttcacgaacaagacgctggaatggaagtttacgaatcaaaagttcggtacccttctgatacttacgtatctcacga |
34579149 |
T |
|
| Q |
228 |
agtgcgacggttccgggacggaaacggtgaggtttcttcactccgccggtggctggagcggatttccgggcggcttttgttgctagctgcttccttggtg |
327 |
Q |
| |
|
|| || || ||||| ||||| |||| ||||| ||||| | ||||||||| | ||| | ||||| || || || ||||| || || ||||||||||||| |
|
|
| T |
34579150 |
agagcaactgttccaggacgataacgatgaggcttcttgattccgccggttgttggcacagattttcgagcagcctttgtggcgagttgcttccttggtg |
34579249 |
T |
|
| Q |
328 |
cttttcctccggtggatttgcgagctgtttgcttggtacgtgccat |
373 |
Q |
| |
|
| || || ||||||| ||||||| |||||||| ||||| ||||| |
|
|
| T |
34579250 |
ccttaccaagggtggatctgcgagcagtttgctttgtacgcgccat |
34579295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 373
Target Start/End: Original strand, 34584799 - 34585044
Alignment:
| Q |
128 |
atctgttttgaaatcttgagcgatttcacgaacgagacgttggaatggaagttttcggatgagaagctctgtgcttttttggtacttgcggatttcgcga |
227 |
Q |
| |
|
|||||| ||||||| ||||| ||||||||||| ||||| |||||||||||||| || || | ||| || || | || || ||||| || || || ||| |
|
|
| T |
34584799 |
atctgtcttgaaattctgagcaatttcacgaacaagacgctggaatggaagtttacgaatcaaaagttcggtacccttctgatacttacgtatctcacga |
34584898 |
T |
|
| Q |
228 |
agtgcgacggttccgggacggaaacggtgaggtttcttcactccgccggtggctggagcggatttccgggcggcttttgttgctagctgcttccttggtg |
327 |
Q |
| |
|
|| || || ||||| ||||| |||| ||||| ||||| | ||||||||| | ||| | ||||| || || || ||||| || || ||||||||||||| |
|
|
| T |
34584899 |
agagcaactgttccaggacgataacgatgaggcttcttgattccgccggttgttggcacagattttcgagcagcctttgtggcgagttgcttccttggtg |
34584998 |
T |
|
| Q |
328 |
cttttcctccggtggatttgcgagctgtttgcttggtacgtgccat |
373 |
Q |
| |
|
| || || ||||||| ||||||| |||||||| ||||| ||||| |
|
|
| T |
34584999 |
ccttaccaagggtggatctgcgagcagtttgctttgtacgcgccat |
34585044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 34571568 - 34571641
Alignment:
| Q |
114 |
ctctggaaacggagatctgttttgaaatcttgagcgatttcacgaacgagacgttggaatggaagttttcggat |
187 |
Q |
| |
|
|||||||| || | ||| || |||||||| ||||| ||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
34571568 |
ctctggaatcgtaaatccgtcttgaaatcctgagcaatttcacgaacaagacgctggaatggaagtttacggat |
34571641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 373
Target Start/End: Original strand, 34571801 - 34571857
Alignment:
| Q |
317 |
cttccttggtgcttttcctccggtggatttgcgagctgtttgcttggtacgtgccat |
373 |
Q |
| |
|
|||||||||||| || || ||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
34571801 |
cttccttggtgccttgccaccggtggatttgcgagcagtttgctttgtacgcgccat |
34571857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 373
Target Start/End: Original strand, 34562977 - 34563033
Alignment:
| Q |
317 |
cttccttggtgcttttcctccggtggatttgcgagctgtttgcttggtacgtgccat |
373 |
Q |
| |
|
|||| ||||||| || || ||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
34562977 |
cttcgttggtgccttgccaccggtggatttgcgagcagtttgctttgtacgcgccat |
34563033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 156; Significance: 9e-83; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 26 - 373
Target Start/End: Complemental strand, 26592262 - 26591915
Alignment:
| Q |
26 |
cttagcatgaatagcgcaaaggttagtatcctcaaagagtccaacgagataagcttcagcagcttcttgaagagcggaaacagcgctactctggaaacgg |
125 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| | |||||| |||||||| || || |||||||| || || || ||||| ||||| |||||| |
|
|
| T |
26592262 |
cttagcatgaatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgcttcttgcagcgccgacacagcagagctctgaaaacgg |
26592163 |
T |
|
| Q |
126 |
agatctgttttgaaatcttgagcgatttcacgaacgagacgttggaatggaagttttcggatgagaagctctgtgcttttttggtacttgcggatttcgc |
225 |
Q |
| |
|
||||| || |||||||| ||||| || |||||||| ||||| ||||| |||||||| || |||||||| || ||||| || |||||||||||||| || | |
|
|
| T |
26592162 |
agatccgtcttgaaatcctgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgagaagttcggtgctcttctggtacttgcggatctcac |
26592063 |
T |
|
| Q |
226 |
gaagtgcgacggttccgggacggaaacggtgaggtttcttcactccgccggtggctggagcggatttccgggcggcttttgttgctagctgcttccttgg |
325 |
Q |
| |
|
| |||||||||||||| || | ||||||||| || ||||||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
26592062 |
ggagtgcgacggttcctggcctgaaacggtgtggcttcttcactccgccggtcgccggagcggatttccgagcggcttttgttgcgagctgcttccttgg |
26591963 |
T |
|
| Q |
326 |
tgcttttcctccggtggatttgcgagctgtttgcttggtacgtgccat |
373 |
Q |
| |
|
|||||| || |||||||| ||||| || |||||||| ||||||||||| |
|
|
| T |
26591962 |
tgctttgccgccggtggacttgcgtgcagtttgcttagtacgtgccat |
26591915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 19 - 373
Target Start/End: Original strand, 43479701 - 43480055
Alignment:
| Q |
19 |
taactctcttagcatgaatagcgcaaaggttagtatcctcaaagagtccaacgagataagcttcagcagcttcttgaagagcggaaacagcgctactctg |
118 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||| | ||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
43479701 |
taaccctcttagcatgaatagcgcaaaggttagtatcttcaaacaaaccaacaagataagcttcagcggcttcttgaagagcagaaacagcgctactctg |
43479800 |
T |
|
| Q |
119 |
gaaacggagatctgttttgaaatcttgagcgatttcacgaacgagacgttggaatggaagttttcggatgagaagctctgtgcttttttggtacttgcgg |
218 |
Q |
| |
|
||| | |||||| ||||||||||| ||||||||||| | ||| | | |||||||||||| || | |||||||||||| || || || || ||||||||| |
|
|
| T |
43479801 |
gaacctgagatcagttttgaaatcctgagcgatttccctaaccaatctttggaatggaagcttcctgatgagaagctcggtactcttctgatacttgcgg |
43479900 |
T |
|
| Q |
219 |
atttcgcgaagtgcgacggttccgggacggaaacggtgaggtttcttcactccgccggtggctggagcggatttccgggcggcttttgttgctagctgct |
318 |
Q |
| |
|
|| || ||||| || || ||||| |||||||| | ||| || ||||||||||| |||||||| ||||| |||||||| |||||||| || || || || | |
|
|
| T |
43479901 |
atctcacgaagagcaacagttccaggacggaatctgtgtggcttcttcactcctccggtggccggagctgatttccgagcggctttggtggcgagttgtt |
43480000 |
T |
|
| Q |
319 |
tccttggtgcttttcctccggtggatttgcgagctgtttgcttggtacgtgccat |
373 |
Q |
| |
|
||||||| ||||| || ||||||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
43480001 |
tccttggagctttgccaccggtggatttgcgagcggtttgtttggtacgagccat |
43480055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 383
Target Start/End: Complemental strand, 38799596 - 38799232
Alignment:
| Q |
19 |
taactctcttagcatgaatagcgcaaaggttagtatcctcaaagagtccaacgagataagcttcagcagcttcttgaagagcggaaacagcgctactctg |
118 |
Q |
| |
|
||||||||||||||||||| || |||||||| || || |||||||| ||||| | |||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
38799596 |
taactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagcttcagcagcttcttgaagagcggaaactgcgctgctctg |
38799497 |
T |
|
| Q |
119 |
gaaacggagatctgttttgaaatcttgagcgatttcacgaacgagacgttggaatggaagttttcggatgagaagctctgtgcttttttggtacttgcgg |
218 |
Q |
| |
|
||| | |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||| || || ||||| ||| |
|
|
| T |
38799496 |
gaatctcagatctgtcttgaaatcttgagcaatttcacgaacaagacgttggaatggaagtttacggatgagaagctcagtgctcttctgatacttacgg |
38799397 |
T |
|
| Q |
219 |
atttcgcgaagtgcgacggttccgggacggaaacggtgaggtttcttcactccgccggtggctggagcggatttccgggcggcttttgttgctagctgct |
318 |
Q |
| |
|
|| || | | || || ||||| || | ||| | || || ||||||||||| ||||| || ||||| |||||||| ||||| || || || ||||||| |
|
|
| T |
38799396 |
atctctctcaaagcaacagttccaggtctgaatctatgtggcttcttcactcctccggtcgccggagctgatttccgagcggccttggtggcgagctgct |
38799297 |
T |
|
| Q |
319 |
tccttggtgcttttcctccggtggatttgcgagctgtttgcttggtacgtgccatcgtgagagaa |
383 |
Q |
| |
|
||| || || || || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38799296 |
tccggggagccttgccgccggtggatttgcgagctgtttgcttggtacgtgccatcgtgagagaa |
38799232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 383
Target Start/End: Original strand, 38821921 - 38822285
Alignment:
| Q |
19 |
taactctcttagcatgaatagcgcaaaggttagtatcctcaaagagtccaacgagataagcttcagcagcttcttgaagagcggaaacagcgctactctg |
118 |
Q |
| |
|
||||||||||||||||||| || |||||||| || || |||||||| ||||| | |||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
38821921 |
taactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagcttcagcagcttcttgaagagcggaaactgcgctgctctg |
38822020 |
T |
|
| Q |
119 |
gaaacggagatctgttttgaaatcttgagcgatttcacgaacgagacgttggaatggaagttttcggatgagaagctctgtgcttttttggtacttgcgg |
218 |
Q |
| |
|
||| | |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||| || || ||||| ||| |
|
|
| T |
38822021 |
gaatctcagatctgtcttgaaatcttgagcaatttcacgaacaagacgttggaatggaagtttacggatgagaagctcagtgctcttctgatacttacgg |
38822120 |
T |
|
| Q |
219 |
atttcgcgaagtgcgacggttccgggacggaaacggtgaggtttcttcactccgccggtggctggagcggatttccgggcggcttttgttgctagctgct |
318 |
Q |
| |
|
|| || | | || || ||||| || | ||| | || || ||||||||||| ||||| || ||||| |||||||| ||||| || || || ||||||| |
|
|
| T |
38822121 |
atctctctcaaagcaacagttccaggtctgaatctatgtggcttcttcactcctccggtcgccggagctgatttccgagcggccttggtggcgagctgct |
38822220 |
T |
|
| Q |
319 |
tccttggtgcttttcctccggtggatttgcgagctgtttgcttggtacgtgccatcgtgagagaa |
383 |
Q |
| |
|
||| || || || || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38822221 |
tccggggagccttgccgccggtggatttgcgagctgtttgcttggtacgtgccatcgtgagagaa |
38822285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 24 - 373
Target Start/End: Complemental strand, 25865796 - 25865447
Alignment:
| Q |
24 |
ctcttagcatgaatagcgcaaaggttagtatcctcaaagagtccaacgagataagcttcagcagcttcttgaagagcggaaacagcgctactctggaaac |
123 |
Q |
| |
|
|||||||||||||| || || | |||||||||||||| | ||| || |||||||| ||||||||||| ||||| || |||||| |||||| || | |
|
|
| T |
25865796 |
ctcttagcatgaattgcacacaaattagtatcctcaaacaatcccacaagataagcctcagcagcttcctgaagtgcaagaacagcatgactctgaaatc |
25865697 |
T |
|
| Q |
124 |
ggagatctgttttgaaatcttgagcgatttcacgaacgagacgttggaatggaagttttcggatgagaagctctgtgcttttttggtacttgcggatttc |
223 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||||||| ||||| ||||||||||| || ||||| | |||||| || || || || ||||| ||||| || |
|
|
| T |
25865696 |
tcagatccgttttgaaatcctgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagctcagtactcttctgatacttacggatctc |
25865597 |
T |
|
| Q |
224 |
gcgaagtgcgacggttccgggacggaaacggtgaggtttcttcactccgccggtggctggagcggatttccgggcggcttttgttgctagctgcttcctt |
323 |
Q |
| |
|
||||| || |||||||| ||||| |||| ||||| ||||||||||||||||||| |||||| ||||||| || ||||| || || || ||||||||| |
|
|
| T |
25865596 |
acgaagagcaacggttccaggacgataacgatgaggcttcttcactccgccggtggttggagcagatttccttgcagctttggtcgcgagttgcttcctt |
25865497 |
T |
|
| Q |
324 |
ggtgcttttcctccggtggatttgcgagctgtttgcttggtacgtgccat |
373 |
Q |
| |
|
||||| || || ||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
25865496 |
ggtgccttgccgccggtggatttgcgagcagtttgcttcgtacgagccat |
25865447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 373
Target Start/End: Complemental strand, 41944045 - 41943691
Alignment:
| Q |
19 |
taactctcttagcatgaatagcgcaaaggttagtatcctcaaagagtccaacgagataagcttcagcagcttcttgaagagcggaaacagcgctactctg |
118 |
Q |
| |
|
|||| |||||||||||||| || || | || ||||||||||| | |||||| ||||||||||| || ||||| ||||| || |||||| ||||| |
|
|
| T |
41944045 |
taaccctcttagcatgaattgcacacaaattggtatcctcaaacaatccaaccagataagcttctgctgcttcctgaagtgcaagaacagcatggctctg |
41943946 |
T |
|
| Q |
119 |
gaaacggagatctgttttgaaatcttgagcgatttcacgaacgagacgttggaatggaagttttcggatgagaagctctgtgcttttttggtacttgcgg |
218 |
Q |
| |
|
||| | |||||| || |||||||||||||| ||||||||||| ||||||||||||||||| || ||||| | ||| || || || || ||||| || ||| |
|
|
| T |
41943945 |
gaatctgagatccgtcttgaaatcttgagcaatttcacgaacaagacgttggaatggaagcttacggatcaaaagatcagtactcttctggtatttacgg |
41943846 |
T |
|
| Q |
219 |
atttcgcgaagtgcgacggttccgggacggaaacggtgaggtttcttcactccgccggtggctggagcggatttccgggcggcttttgttgctagctgct |
318 |
Q |
| |
|
|| || |||||||| ||||| || ||||| | || ||||||||||| ||||| ||||| | ||||| ||||| || || || || || || || |||| |
|
|
| T |
41943845 |
atctcacgaagtgcaacggtaccaggacgatagcgatgaggtttcttgactccaccggttgtaggagcagatttgcgagcagccttggtggccagttgct |
41943746 |
T |
|
| Q |
319 |
tccttggtgcttttcctccggtggatttgcgagctgtttgcttggtacgtgccat |
373 |
Q |
| |
|
||||||| || || || ||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
41943745 |
tccttggagccttgccaccggtggatttgcgagcagtttgcttagtacgagccat |
41943691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 44344051 - 44343978
Alignment:
| Q |
24 |
ctcttagcatgaatagcgcaaaggttagtatcctcaaagagtccaacgagataagcttcagcagcttcttgaag |
97 |
Q |
| |
|
||||||||||||||||| || | || ||||||||||| | ||| ||||||||||| ||||| ||||| ||||| |
|
|
| T |
44344051 |
ctcttagcatgaatagcacacaaattggtatcctcaaacaatcccacgagataagcctcagctgcttcctgaag |
44343978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 27440951 - 27440875
Alignment:
| Q |
66 |
ccaacgagataagcttcagcagcttcttgaagagcggaaacagcgctactctggaaacggagatctgttttgaaatc |
142 |
Q |
| |
|
||||| ||||||||| || |||||||||||||| |||||| |||||||| || |||||||||||||||||||| |
|
|
| T |
27440951 |
ccaacaagataagctacactggcttcttgaagagcagaaacaatgctactctaaaatcggagatctgttttgaaatc |
27440875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 17769236 - 17769312
Alignment:
| Q |
66 |
ccaacgagataagcttcagcagcttcttgaagagcggaaacagcgctactctggaaacggagatctgttttgaaatc |
142 |
Q |
| |
|
||||| ||||||||| || |||||||||||||| ||||||| ||||||| || |||||||||||||||||||| |
|
|
| T |
17769236 |
ccaacaagataagctacactggcttcttgaagagcagaaacagtactactctaaaatcggagatctgttttgaaatc |
17769312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 7594402 - 7594487
Alignment:
| Q |
135 |
ttgaaatcttgagcgatttcacgaacgagacgttggaatggaagttttcggatgagaagctctgtgcttttttggtacttgcggat |
220 |
Q |
| |
|
|||||||||||||| |||||||| || ||||| || |||||||| || ||||| | |||||| || || || |||||||| ||||| |
|
|
| T |
7594402 |
ttgaaatcttgagcaatttcacggacaagacgctgaaatggaagcttgcggatcaaaagctcagtactcttctggtacttacggat |
7594487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 373
Target Start/End: Original strand, 7594916 - 7594977
Alignment:
| Q |
312 |
agctgcttccttggtgcttttcctccggtggatttgcgagctgtttgcttggtacgtgccat |
373 |
Q |
| |
|
|||||||||||||| || || || ||||| || |||||||| |||||||||||||| ||||| |
|
|
| T |
7594916 |
agctgcttccttggagccttaccaccggtagacttgcgagcggtttgcttggtacgagccat |
7594977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 18492793 - 18492741
Alignment:
| Q |
135 |
ttgaaatcttgagcgatttcacgaacgagacgttggaatggaagttttcggat |
187 |
Q |
| |
|
||||||||||||| ||||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
18492793 |
ttgaaatcttgagaaatttcacgaacaagacactggaatggaagtttacggat |
18492741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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