View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2077_low_5 (Length: 281)
Name: NF2077_low_5
Description: NF2077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2077_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 16)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 28 - 232
Target Start/End: Original strand, 4736199 - 4736404
Alignment:
| Q |
28 |
accatgtcttgttaacacaggcaaagggactccattcatttcagttatagaattgaggactttgaacaatacagcttatgtcacacactcagctaaatca |
127 |
Q |
| |
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||||||| ||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || | ||||| || |
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| T |
4736199 |
accatgttttgttaacacaggaaacggaactccattcatttcagttatagaattgaggactttgaacaacacagcttatgtcacatacccggctaattct |
4736298 |
T |
|
| Q |
128 |
tcagtattatcattcttcaagcgatctgatgtaggttccttcacaaacttacagtacaggtacgatggagtcagctagcagcacaataat----tagctt |
223 |
Q |
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|| |||||||||| || |||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||| |||| |||||| |
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| T |
4736299 |
---gtgttatcattctggaaacgatctgatgtaggttccatcacaaacttacagtacaggtaagatggcgtcagctagcagcacattaattaattagctt |
4736395 |
T |
|
| Q |
224 |
actttaata |
232 |
Q |
| |
|
||||||||| |
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|
| T |
4736396 |
actttaata |
4736404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 4680826 - 4681008
Alignment:
| Q |
28 |
accatgtcttgttaacacaggcaaagggactccattcatttcagttatagaattgaggactttgaacaatacagcttatgtcacacactcagctaaatca |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| | |||| ||||||||||||| || ||||||||||| |
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| T |
4680826 |
accatgtcttgttaacacaggcaaagggactccgttcatttcagccatagaattgaggactttggataataaagcttatgtcacatacgcagctaaatca |
4680925 |
T |
|
| Q |
128 |
tcagtattatcattcttcaagcgatctgatgtaggttccttcacaaacttacagtacaggtacgatggagtcagctagcagca |
210 |
Q |
| |
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||||||||||||| |||| |||| |||| |||||||| ||||||||||| | |||||||| ||||||||| ||||| |||| |
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| T |
4680926 |
tcagtattatcatacttctttcgatttgatttaggttccatcacaaacttagaatacaggtaagatggagtctgctagtagca |
4681008 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 28 - 190
Target Start/End: Original strand, 4725724 - 4725886
Alignment:
| Q |
28 |
accatgtcttgttaacacaggcaaagggactccattcatttcagttatagaattgaggactttgaacaatacagcttatgtcacacactcagctaaatca |
127 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
4725724 |
accatgtcttgttaacacagacaaagggactccattcatttcagctatagaattgaggactttgaacaataaaacttatgtcacacactcagctaaatca |
4725823 |
T |
|
| Q |
128 |
tcagtattatcattcttcaagcgatctgatgtaggttccttcacaaacttacagtacaggtac |
190 |
Q |
| |
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|||||||||||| | | | |||| |||| |||||||| ||||||| ||||| ||||||||| |
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| T |
4725824 |
tcagtattatcactttcctttcgatttgatataggttccatcacaaatttacaatacaggtac |
4725886 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 28 - 219
Target Start/End: Original strand, 4745195 - 4745386
Alignment:
| Q |
28 |
accatgtcttgttaacacaggcaaagggactccattcatttcagttatagaattgaggactttgaacaatacagcttatgtcacacactcagctaaatca |
127 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||| || | |||||| ||||||| |
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|
| T |
4745195 |
accatgtcttgttaacacaggcagcaggactccattcatttcagctatagaattgaggagtttgaacaatacagcttatggcaaatactcagataaatca |
4745294 |
T |
|
| Q |
128 |
tcagtattatcattcttcaagcgatctgatgtaggttccttcacaaacttacagtacaggtacgatggagtcagctagcagcacaataatta |
219 |
Q |
| |
|
|||||||||||| | | | ||||| ||| |||||||| ||||||||||||| |||||||| ||||||||| ||| ||||||| |||||| |
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|
| T |
4745295 |
tcagtattatcactttcctttcgatcggatataggttccatcacaaacttacaatacaggtaagatggagtcctctatcagcacattaatta |
4745386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 152
Target Start/End: Original strand, 4702956 - 4703080
Alignment:
| Q |
28 |
accatgtcttgttaacacaggcaaagggactccattcatttcagttatagaattgaggactttgaacaatacagcttatgtcacacactcagctaaatca |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| | ||| |||||||| |
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| T |
4702956 |
accatgtcttgttaacacaggcaaagggactccattcatttcagttattgaattgaggactttgaacaataaagcttatgtcacatattcatctaaatca |
4703055 |
T |
|
| Q |
128 |
tcagtattatcattcttcaagcgat |
152 |
Q |
| |
|
||||||||| |||||| ||||| |
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|
| T |
4703056 |
attgtattatcactcttcaggcgat |
4703080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 4891003 - 4890905
Alignment:
| Q |
28 |
accatgtcttgttaacacaggcaaagggactccattcatttcagttatagaattgaggactttgaacaatacagcttatgtcacacactcagctaaatc |
126 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
4891003 |
accatgtcttgttaacacaggaaaagggactccattcatttcagctatagaattgaggcctttgaacaatacagcttatgtcacatactcagctaaatc |
4890905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 28 - 232
Target Start/End: Original strand, 4688460 - 4688665
Alignment:
| Q |
28 |
accatgtcttgttaacacaggcaaagggactccattcatttcagttatagaattgaggactttgaacaatacagcttatgtcacacactcagctaaatca |
127 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||| |||| | |
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|
| T |
4688460 |
accatgtcttgttaacacaggcaacgggactccattcatttcatctatagaattgaggactttgaacaatactgcttatgtcacaaactcaactaa---a |
4688556 |
T |
|
| Q |
128 |
tcagtattatcattcttcaagcgatctgatgtaggttccttcacaaacttacagtacaggtacgatggagtcagc----tagcagcacaataattagctt |
223 |
Q |
| |
|
||||||||||| |||| |||| |||| |||||||| |||||||| | | |||||||| |||||||| || |||||||||| ||||||||| |
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|
| T |
4688557 |
acagtattatcaaacttccttcgatttgatataggttccatcacaaacattgaatacaggtaagatggagtttgcttagtagcagcacattaattagcta |
4688656 |
T |
|
| Q |
224 |
actttaata |
232 |
Q |
| |
|
||||||||| |
|
|
| T |
4688657 |
actttaata |
4688665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 28 - 175
Target Start/End: Original strand, 4714292 - 4714436
Alignment:
| Q |
28 |
accatgtcttgttaacacaggcaaagggactccattcatttcagttatagaattgaggactttgaacaatacagcttatgtcacacactcagctaaatca |
127 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||| |
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|
| T |
4714292 |
accatgtcttgttaacacaggaaaagggactccattcatttcagttatagaattgaggactttgaacaatgaagtttatgtcacaaactcagctaaatca |
4714391 |
T |
|
| Q |
128 |
tcagtattatcattcttcaagcgatctgatgtaggttccttcacaaac |
175 |
Q |
| |
|
||| ||||| ||| | |||||||||||||||||| || ||||| |
|
|
| T |
4714392 |
---gtagtatcacccttgagacgatctgatgtaggttccatcgcaaac |
4714436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 28 - 147
Target Start/End: Original strand, 4995753 - 4995869
Alignment:
| Q |
28 |
accatgtcttgttaacacaggcaaagggactccattcatttcagttatagaattgaggactttgaacaatacagcttatgtcacacactcagctaaatca |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||| |||||||||||||||||||| ||||| ||||| |||| | |
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|
| T |
4995753 |
accatgtcttgttaacacaggcaaagggactccattcatttctgctattgaattgaggcctttgaacaatacagcttatatcacatactcacctaa---a |
4995849 |
T |
|
| Q |
128 |
tcagtattatcattcttcaa |
147 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
4995850 |
tcagtattatcactcttcaa |
4995869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 28 - 119
Target Start/End: Complemental strand, 4905045 - 4904954
Alignment:
| Q |
28 |
accatgtcttgttaacacaggcaaagggactccattcatttcagttatagaattgaggactttgaacaatacagcttatgtcacacactcag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||| |||||| |
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|
| T |
4905045 |
accatgtcttgttaacacaggcaaagggactccattcatttcagccatagaattgaggcctttgaacaatagagcttatgtcacaaactcag |
4904954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 28 - 127
Target Start/End: Original strand, 10446210 - 10446309
Alignment:
| Q |
28 |
accatgtcttgttaacacaggcaaagggactccattcatttcagttatagaattgaggactttgaacaatacagcttatgtcacacactcagctaaatca |
127 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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|
| T |
10446210 |
accatgtcttgttaacacaggcaaagggattccattcatttcagctatagaattgaggactttgaacaataatacttataccacacactcagctaaatca |
10446309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 4914160 - 4913989
Alignment:
| Q |
28 |
accatgtcttgttaacacaggcaaagggactccattcatttcagttatagaattgaggactttgaacaatacagcttatgtcacacactcagctaaatca |
127 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||| | |||||||||| ||||| || | |
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|
| T |
4914160 |
accatgtcttgttaacataggcaaagggactccattcatttcagttttagaattgaggactttgacaaattctaattatgtcacatactcacctga---t |
4914064 |
T |
|
| Q |
128 |
tcagtattatcattcttcaagcgatctgatgtaggttccttcacaaacttacagtacaggtacgatggagtcagc |
202 |
Q |
| |
|
| |||||||||| | |||||||||| |||| |||||||| |||||||| | | |||||||| |||| ||||||| |
|
|
| T |
4914063 |
ttagtattatcacttttcaagcgatgtgatttaggttccatcacaaacagagaatacaggtaagatgtagtcagc |
4913989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 21440222 - 21440143
Alignment:
| Q |
20 |
tacataacaccatgtcttgttaacacaggcaaagggactccattcatttcagttatagaattgaggactttgaacaatac |
99 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||| |
|
|
| T |
21440222 |
tacataaaaccatgtcttgttaacacaggcaaagggactccattcatttcagccatagaattgagggctatgaacaatac |
21440143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 4777205 - 4777136
Alignment:
| Q |
28 |
accatgtcttgttaacacaggcaaagggactccattcatttcagttatagaattgaggactttgaacaat |
97 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||| ||||||||||| |
|
|
| T |
4777205 |
accatgtcttgttaacacaggccaagggactccattcatttcggctatagaattgaggcctttgaacaat |
4777136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 4875996 - 4875927
Alignment:
| Q |
28 |
accatgtcttgttaacacaggcaaagggactccattcatttcagttatagaattgaggactttgaacaat |
97 |
Q |
| |
|
|||||||||||||||||| || || || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4875996 |
accatgtcttgttaacactggaaatggaactccattcatttcagttatagaattgaggactttgaacaat |
4875927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 4925889 - 4925826
Alignment:
| Q |
28 |
accatgtcttgttaacacaggcaaagggactccattcatttcagttatagaattgaggactttg |
91 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4925889 |
accatgtcttgttaaaacaggcaaagggactccattcatttcaactatagaattgaggactttg |
4925826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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