View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20780_high_13 (Length: 310)
Name: NF20780_high_13
Description: NF20780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20780_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 2945743 - 2945473
Alignment:
| Q |
12 |
atgaagctgttcaaagtcttgtcaactcgagtttccatgagacaacagagccgatcaatgtaagctatagtttatcattatcatcgggggaaatcattac |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2945743 |
atgaagctgttcaaagtcttgtcaactcgagtttccatgagacaacagaaccgatcaatgtaagctatagtttatcattatcatcgggggaaatcattac |
2945644 |
T |
|
| Q |
112 |
aaagaaagcaaacgaaagggtacgttgggaaagtcaaagctgtaagtttatcatccagaagattgaggaagttcccggtgattttttgaattatgctaca |
211 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2945643 |
aaagaaagcaaacaaaagggtacgttgggaaagtcaaagctgtaagtttatcatccagaagattgaggaagttcccggtgattctttgaattatgctaca |
2945544 |
T |
|
| Q |
212 |
aatttctctgaagcaatatccgagggtattttgcctgagaatcatgattatgttcctgcactggctgaact |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2945543 |
aatttctctgaagcaatatccgagggtattttgcctgagaatcatgattatgttcctgcactggctgaact |
2945473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 273
Target Start/End: Complemental strand, 2929102 - 2928841
Alignment:
| Q |
12 |
atgaagctgttcaaagtcttgtcaactcgagtttccatgagacaacagagccgatcaatgtaagctatagtttatcattatcatcgggggaaatcattac |
111 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| |
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| T |
2929102 |
atgaagctgttcaaagtcttatcaactcgagtttccatgagacaacagagccgatcaatgtaagctatagtttgtcattgtcatcaggggaaatcattac |
2929003 |
T |
|
| Q |
112 |
aaagaaagcaaacgaaagggtacgttgggaaagtcaaagctgtaagtttatcatccagaagattgaggaagttcccggtgattttttgaattatgctaca |
211 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||| |||| | ||||||| |
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| T |
2929002 |
aaagaaagcaaacaaaagggtacgttgggaaagtcaaagctgcaagtttatcatccagaagatggaggaagttcctggtgatgcattgagatgtgctaca |
2928903 |
T |
|
| Q |
212 |
aatttctctgaagcaatatccgagggtattttgcctgagaatcatgattatgttcctgcact |
273 |
Q |
| |
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| |||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| |
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| T |
2928902 |
agtttctctgaagcaatatccgagggtattttgcgtgagaatcatgatcatgttgctgcact |
2928841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 14 - 282
Target Start/End: Original strand, 3013682 - 3013950
Alignment:
| Q |
14 |
gaagctgttcaaagtcttgtcaactcgagtttccatgagacaacagagccgatcaatgtaagctatagtttatcattatcatcgggggaaatcattacaa |
113 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| | |
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| T |
3013682 |
gaagctgttcaaagtcttatcaacttgagtttccatgagacaacagagccaatcaatgtaagctatagtttatcattatcatcaggggacatcattacca |
3013781 |
T |
|
| Q |
114 |
agaaagcaaacgaaagggtacgttgggaaagtcaaagctgtaagtttatcatccagaagattgaggaagttcccggtgattttttgaattatgctacaaa |
213 |
Q |
| |
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||||| ||||| ||||||||||||||||||||||||| || |||||||||||||||||||| || | ||||| ||||||| ||||| ||||||||||| |
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| T |
3013782 |
agaaatcaaacaaaagggtacgttgggaaagtcaaagttgcaagtttatcatccagaagatggatggagttcttggtgattcattgaagtatgctacaaa |
3013881 |
T |
|
| Q |
214 |
tttctctgaagcaatatccgagggtattttgcctgagaatcatgattatgttcctgcactggctgaact |
282 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||| ||||| |
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| T |
3013882 |
tttctctgaagcaatatccgagggtattttgcgtgagaatcatgatgatattcctgcactggccgaact |
3013950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 270
Target Start/End: Complemental strand, 37794471 - 37794213
Alignment:
| Q |
12 |
atgaagctgttcaaagtcttgtcaactcgagtttccatgagacaacagagccgatcaatgtaagctatagtttatcattatcatcgggggaaatcattac |
111 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||||| |||||||| | ||| ||| |||||||||| | ||||| | ||||| ||||| |||||||| |
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| T |
37794471 |
atgaagctgttcaaggtcttctcaacctgagtttccttgagacaaaggtcccggtcacggtaagctataatctatcactgtcatcaggggacatcattac |
37794372 |
T |
|
| Q |
112 |
aaagaaagcaaacgaaagggtacgttgggaaagtcaaagctgtaagtttatcatccagaagattgaggaagttcccggtgattttttgaattatgctaca |
211 |
Q |
| |
|
|||||||| || ||| |||||| |||||||| ||||| | |||||| ||||||||||| | || || || || || |||| ||||| ||| |
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| T |
37794371 |
aaagaaagatgacaaaatggtacgctgggaaaggcaaagttccaagtttttcatccagaagttggatgagcctcggggaaatgcactgaaatatgcgaca |
37794272 |
T |
|
| Q |
212 |
aatttctctgaagcaatatccgagggtattttgcctgagaatcatgattatgttcctgc |
270 |
Q |
| |
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||||||||||| ||||||| || ||| ||||| ||||||||||||||| ||||||||| |
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| T |
37794271 |
tatttctctgaaacaatatcagaaggtgttttgtctgagaatcatgattttgttcctgc |
37794213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 2919414 - 2919327
Alignment:
| Q |
198 |
tgaattatgctacaaatttctctgaagcaatatccgagggtattttgcctgagaatcatgattatgttcctgcactggctgaactgat |
285 |
Q |
| |
|
|||| ||||| ||| ||||||||||||||||||| || ||| ||||| ||||||||||||| ||||||||| || |||||||||| |
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| T |
2919414 |
tgaaatatgccacatatttctctgaagcaatatcagaaggtgttttgtgtgagaatcatgatcttgttcctgctctctctgaactgat |
2919327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 2941880 - 2941823
Alignment:
| Q |
228 |
tatccgagggtattttgcctgagaatcatgattatgttcctgcactggctgaactgat |
285 |
Q |
| |
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|||| |||||| |||||| ||||||||||||| ||||||||||||| |||||||||| |
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|
| T |
2941880 |
tatctgagggtgttttgcgtgagaatcatgatcatgttcctgcactcactgaactgat |
2941823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 4917361 - 4917622
Alignment:
| Q |
12 |
atgaagctgttcaaagtcttgtcaactcgagtttccatgagacaacagagccgatcaatgtaagctatagtttatcattatcatcgggggaaatcattac |
111 |
Q |
| |
|
||||||||||||||| | || |||||| ||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| ||| |||||||||| |
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|
| T |
4917361 |
atgaagctgttcaaaattttctcaacttaagttttcatgagacaaaggagccaatcaatgtaagctatagtttatcattatcatcagggaaaatcattac |
4917460 |
T |
|
| Q |
112 |
aaagaaagcaaacgaaagggtacgttgggaaagtcaaagctgtaagtttatcatccagaagattgaggaagttcccggtgattttttgaattatgctaca |
211 |
Q |
| |
|
|||||||| ||| ||||||| |||||||| ||||||||||| |||||||| ||||| ||||| || | || ||| | ||| | ||||| ||||||||| |
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|
| T |
4917461 |
caagaaagccaacaaaagggtgcgttgggagagtcaaagctgcaagtttataatccaaaagatggatggagctcctgatgaaatattgaaatatgctaca |
4917560 |
T |
|
| Q |
212 |
aatttctctgaagcaatatccgagggtattttgcctgagaatcatgattatgttcctgcact |
273 |
Q |
| |
|
|||| |||||||||||||| |||||| |||||| ||||||||| ||| ||||||||||||| |
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|
| T |
4917561 |
tatttttctgaagcaatatctgagggtgttttgcgtgagaatcacgatcatgttcctgcact |
4917622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 1508013 - 1508268
Alignment:
| Q |
12 |
atgaagctgttcaaagtcttgtcaactcgagtttccatgagacaacagagccgatcaatgtaagctatagtttatcattatcatcgggggaaatcattac |
111 |
Q |
| |
|
||||||||||||||| |||| |||||| || ||||||||||||| || || |||||||||||||||||| | || ||||||| || || |||||||| |
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| T |
1508013 |
atgaagctgttcaaactcttctcaacttaagcttccatgagacaatggaaccaatcaatgtaagctatagtctgccactatcatccggagacatcattac |
1508112 |
T |
|
| Q |
112 |
aaagaaagcaaacgaaagggtacgttgggaaagtcaaagctgtaagtttatcatccagaagattgaggaagttcccggtgattttttgaattatgctaca |
211 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||| | |||||||||||||||||||| || | || | |||| ||||| |||| |||| |
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| T |
1508113 |
aaagaaagcaaacaaaagggtgcgttgggaaagtcaaagttccaagtttatcatccagaagatggatg--gt----gaggattcattgaaatatgttaca |
1508206 |
T |
|
| Q |
212 |
aatttctctgaagcaatatccgagggtattttgcctgagaatcatgattatgttcctgcact |
273 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||| ||| ||||||||| ||||||||||||| |
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|
| T |
1508207 |
aatttctctgaagcaatatctgagggtgttttgcatgaaaatcatgatcatgttcctgcact |
1508268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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