View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20780_high_2 (Length: 353)
Name: NF20780_high_2
Description: NF20780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20780_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 22 - 339
Target Start/End: Complemental strand, 1653741 - 1653424
Alignment:
| Q |
22 |
catcatcacatagaacaaaccaacgcacatctgagagaccaaggcgaaagctttctttgataatgcgagaaatccggaggccagaagggtgacctatggg |
121 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1653741 |
catcatcacataggacaaaccaacgcacatctgagagaccaaggcgaaagctttctttgataatgcgagaaatccggaggccagaagggtgacctatggg |
1653642 |
T |
|
| Q |
122 |
attagtgtaacggaagtacgaaatgtctccagaaatcatggtagggggtaataactcatctccatgttcttcaaccactttttcctctaaccagacatgg |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1653641 |
attagtgtaacggaagtacgaaatgtctccagaaatcatggtagggggtaataactcatctccatgttcttcaaccactttttcctctaaccacacatgg |
1653542 |
T |
|
| Q |
222 |
ccacgcatgtcattgggacgccaccatagtctaatatattccttcctccgtttccaaagctgagatgatccagctatgccaaaaacaatatgttgaactg |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1653541 |
ccacgcatgtcattgggacgccaccatagtctaatatattccttcctccgtttccaaagctgagatgatccagctatgccaaaaacaatatgttgaactg |
1653442 |
T |
|
| Q |
322 |
acaaaccttcttgttctg |
339 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
1653441 |
acaaaccttcttgttctg |
1653424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University