View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20780_high_3 (Length: 348)
Name: NF20780_high_3
Description: NF20780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20780_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 30 - 335
Target Start/End: Complemental strand, 38462706 - 38462401
Alignment:
| Q |
30 |
ataaacatgttatatgaccaaaataaaacgaaatttattgataaaacataacaaattgtggcaattaaacacagccctgcattactaaaggagaccatag |
129 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38462706 |
ataaacatgttatatgaccaaaataaaacgaaatatattgataaaacataacaaattgtggcaattaaacacagccctgcattactaaaggagaccatag |
38462607 |
T |
|
| Q |
130 |
aattctagctcattacgtattcatcattccaaactctaagtttgatttaataccataaccatgattttatcccacacgtagcatattactactcttacta |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38462606 |
aattctagctcattacgtattcatcattccaaactctaagtttgatttaataccataaccatgattttatcccacacgtagcatattactactcttacta |
38462507 |
T |
|
| Q |
230 |
cataacttttaacttaaagccaccataataaaaagataggacagaaaaagaaataaacatcaaaacatgaaaatgatcattcagtgttaccttattatag |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38462506 |
cataacttttaacttaaagccaccataataaaaagataggacagaaaaagaaataaacatcaaaacatgaaaatgatcattcagtgttaccttattatag |
38462407 |
T |
|
| Q |
330 |
ggtctc |
335 |
Q |
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|||||| |
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| T |
38462406 |
ggtctc |
38462401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 32 - 335
Target Start/End: Original strand, 52091272 - 52091568
Alignment:
| Q |
32 |
aaacatgttatatgaccaaaataaaacgaaatttattgataaaacataacaaattgtggcaattaaacacagccctgcattactaaaggagaccatagaa |
131 |
Q |
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|||||||||||||||| |||| |||| ||||| | ||||||||| | ||||||||||| |||| | ||||| | ||||||||||| |||||| |||| || |
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| T |
52091272 |
aaacatgttatatgactaaaacaaaaagaaatatgttgataaaatacaacaaattgtgtcaatgacacacaacactgcattactagaggagagcatacaa |
52091371 |
T |
|
| Q |
132 |
ttctagctcattacgta----ttcatcattccaaactctaagtttgatttaataccataaccatgattttatcccacacgtagcatattactactcttac |
227 |
Q |
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||| | |||||||| || |||| ||||||||| |||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||| |
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| T |
52091372 |
ttccaactcattacctacctattcaccattccaaa-----agtttgatttaataccataatcatgattttatcccgcacatagcatattactactcttaa |
52091466 |
T |
|
| Q |
228 |
tacataacttttaacttaaagccaccataataaaaagataggacagaaaaagaaataaacatcaaaacatgaaaatgatcattcagtgttaccttattat |
327 |
Q |
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|| ||||| ||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||| | |||| ||||| | |
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| T |
52091467 |
taaataac-tttaacttaaagccaccataatatgaagataggacagaaaaag-----aacagaaaaacatgaaaatgatcattcaatcttacgttattgt |
52091560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 51 - 335
Target Start/End: Complemental strand, 48754385 - 48754108
Alignment:
| Q |
51 |
aataaaacgaaatttattgataaaacataacaaattgtggcaattaaacacagccctgcattactaaaggagaccatagaattctagctcattacgtatt |
150 |
Q |
| |
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||||||| ||||| | ||||||||||| |||||||||||||||| | || | | ||||||| |||||||||| |||| ||||| | |||||||| |||| |
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| T |
48754385 |
aataaaaagaaatatgttgataaaacacaacaaattgtggcaatgacacgcgacactgcattgctaaaggagagcatacaattccaactcattacctatt |
48754286 |
T |
|
| Q |
151 |
catcattccaaactctaagtttgatttaataccataaccatgattttatcccacacgtagcatattac--tactcttactacataacttttaacttaaag |
248 |
Q |
| |
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|| ||||||||| ||||||||||||||||||| | |||||||||||||||| ||||||||||| ||||||| || ||||| |||||||||||| |
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| T |
48754285 |
caccattccaaa-----agtttgatttaataccatagtcctgattttatcccacacatagcatattacaacactcttaataaataac-tttaacttaaag |
48754192 |
T |
|
| Q |
249 |
ccaccataataaaaagataggacagaaaaagaaataaacatcaaaacatgaaaatgatcattcagtgttaccttattatagggtctc |
335 |
Q |
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||||||||||| ||||||||||||||| ||| ||||| ||||| |||||||||||||||| | |||| ||||| ||||||||| |
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| T |
48754191 |
ccaccataatatgaagataggacagaaa---aaaaaaacagaaaaacgtgaaaatgatcattcaatcttacgttattgtagggtctc |
48754108 |
T |
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