View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20780_high_4 (Length: 335)
Name: NF20780_high_4
Description: NF20780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20780_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 31 - 275
Target Start/End: Original strand, 44668113 - 44668356
Alignment:
| Q |
31 |
atcttctacctattcaatgatttaaaatgaaagaaatttcaatgaattctttaggaagcatgactactaggaaacctgagacctttatgttgttaattaa |
130 |
Q |
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| T |
44668113 |
atcttctacctattcaatgatttaaaatgaaagaaatttcaatgaattctttaggaagcatgactactaggaaacctgagacctttatgttgttaattaa |
44668212 |
T |
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| Q |
131 |
ccataaacttttgttttatagtactaagagtcacgtaatgaaactagtgtgaagttttgaacaaaaattctacttggatgaccaaacaaaatgatcttaa |
230 |
Q |
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| T |
44668213 |
ccataaacttttgttttatagtactaagagttacgtaatgaaac-agtgtgaagttttgaacaaaaattctacctggatgaccaaacaaaatgatcttaa |
44668311 |
T |
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| Q |
231 |
tttatatacttgatacaaattctaattttaattcctttattaatt |
275 |
Q |
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| T |
44668312 |
tttatatacttgatacaaattctaattttaattcctttattaatt |
44668356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 9e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 31 - 169
Target Start/End: Complemental strand, 12538904 - 12538767
Alignment:
| Q |
31 |
atcttctacctattcaatgatttaaaatgaaagaaatttcaatgaattctttaggaagcatgactactaggaaacctgagacctttatgttgttaattaa |
130 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12538904 |
atcttctacttattcaatgatttaaaatgaaagaaatttcaatgaattctttaggaagcatgactattaggaaacctgagacctttatgttgttaattaa |
12538805 |
T |
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| Q |
131 |
ccataaacttttgttttatagtactaagagtcacgtaat |
169 |
Q |
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| T |
12538804 |
ccataaacttttgttttatagta-taagagttacgtaat |
12538767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 12529369 - 12529290
Alignment:
| Q |
165 |
gtaatgaaactagtgtgaagttttgaacaaaaattctacttggatgaccaaacaaaatgatcttaatttatatacttgat |
244 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12529369 |
gtaatgaaactagcgtgaagttttgaacaaaaattctacttggatgaccaaacaaaatgatcttaatttatatacttgat |
12529290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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